Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99698 * 2 1 4 4 C 1.38214 * 119.99810 * 180.20800 * 3 2 1 5 5 C 1.38255 * 120.00057 * 359.85977 * 4 3 2 6 6 C 1.38214 * 119.99981 * 359.95697 * 5 4 3 7 7 C 1.38216 * 120.00358 * 179.81605 * 2 1 3 8 8 C 1.50696 * 119.99962 * 359.97438 * 7 2 1 9 9 H 1.09003 * 110.76248 * 357.98151 * 8 7 2 10 10 C 1.55138 * 110.70648 * 121.17929 * 8 7 2 11 11 C 1.54908 * 101.68619 * 154.02039 * 10 8 7 12 12 N 1.47887 * 104.77420 * 322.97931 * 11 10 8 13 13 C 1.46907 * 111.01481 * 146.33028 * 12 11 10 14 14 C 1.52999 * 109.46903 * 69.12508 * 13 12 11 15 15 H 1.09000 * 109.47110 * 59.99847 * 14 13 12 16 16 O 1.42900 * 109.47169 * 299.99900 * 14 13 12 17 17 C 1.50695 * 109.47221 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99981 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00219 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00134 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 120.00052 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46991 * 59.99811 * 21 19 17 23 23 H 1.48506 * 109.47065 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46947 * 299.99870 * 21 19 17 25 25 C 1.47444 * 108.58784 * 24.04325 * 12 11 10 26 26 H 1.08996 * 109.46462 * 270.18052 * 1 2 3 27 27 H 1.08995 * 109.47366 * 30.18486 * 1 2 3 28 28 H 1.09001 * 109.46840 * 150.18854 * 1 2 3 29 29 H 1.08004 * 120.00309 * 0.05059 * 3 2 1 30 30 H 1.08009 * 119.99793 * 179.83333 * 4 3 2 31 31 H 1.08006 * 119.99851 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.99755 * 180.02562 * 6 5 4 33 33 H 1.09002 * 110.99302 * 272.13040 * 10 8 7 34 34 H 1.08995 * 110.99003 * 35.90927 * 10 8 7 35 35 H 1.08993 * 110.37866 * 81.77867 * 11 10 8 36 36 H 1.09005 * 110.37455 * 204.12444 * 11 10 8 37 37 H 1.09005 * 109.46832 * 189.12286 * 13 12 11 38 38 H 1.08994 * 109.46980 * 309.12661 * 13 12 11 39 39 H 0.96700 * 114.00331 * 300.00067 * 16 14 13 40 40 H 0.97006 * 120.00548 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.89066 * 239.63908 * 25 12 11 42 42 H 1.09001 * 109.89084 * 118.44467 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0043 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0019 7 6 2.1982 -1.1969 0.0038 8 6 1.4448 -2.5020 0.0086 9 1 0.3694 -2.3273 0.0443 10 6 1.8207 -3.3570 -1.2301 11 6 1.5355 -4.7914 -0.7197 12 7 1.9498 -4.7759 0.6999 13 6 1.0941 -5.6550 1.5081 14 6 1.3655 -7.1139 1.1355 15 1 2.4123 -7.3492 1.3274 16 8 1.0788 -7.3128 -0.2502 17 6 0.4882 -8.0157 1.9650 18 1 -0.1949 -7.5908 2.6855 19 6 0.5576 -9.3832 1.8040 20 7 1.3891 -9.9007 0.9263 21 14 -0.5304 -10.5011 2.8318 22 1 -1.9566 -10.1809 2.5698 23 1 -0.2669 -11.9172 2.4702 24 1 -0.2329 -10.2938 4.2718 25 6 1.8934 -3.3867 1.1908 26 1 -0.3632 0.0032 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1327 0.0008 30 1 4.1204 2.1328 -0.0071 31 1 5.3518 0.0002 -0.0096 32 1 4.1207 -2.1321 -0.0026 33 1 1.1853 -3.1118 -2.0812 34 1 2.8737 -3.2349 -1.4838 35 1 0.4728 -5.0193 -0.8020 36 1 2.1247 -5.5177 -1.2796 37 1 1.3129 -5.5032 2.5651 38 1 0.0474 -5.4196 1.3162 39 1 0.1627 -7.1218 -0.4938 40 1 1.4377 -10.8629 0.8127 41 1 2.8796 -3.0744 1.5342 42 1 1.1732 -3.3102 2.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929458239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -29.080056 kcal Electronic energy + Delta-G solvation = -21261.386726 eV Core-core repulsion = 18205.651952 eV Total energy + Delta-G solvation = -3055.734774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07300 -38.18935 -35.54586 -33.20305 -32.34462 -32.04477 -30.22132 -28.18012 -27.62553 -26.72389 -24.50193 -22.88529 -21.28370 -21.11719 -20.12121 -19.76907 -16.93638 -16.77251 -15.89433 -15.18026 -14.83931 -14.55914 -14.44194 -14.13400 -13.94203 -13.89617 -13.27170 -13.11227 -12.88536 -12.70754 -12.32766 -12.24914 -11.97079 -11.78064 -11.39126 -11.20871 -11.16633 -11.01977 -10.90862 -10.79664 -10.57231 -10.39857 -10.26208 -9.99294 -8.97139 -8.80754 -8.58397 -8.53998 -8.06728 -7.60344 -5.97846 -4.16302 1.29867 1.34263 3.29876 3.35300 3.36884 3.68094 4.36872 4.57092 4.65149 4.76066 4.87630 4.96209 5.02667 5.15411 5.19898 5.27493 5.28992 5.44554 5.55235 5.60396 5.70047 5.70311 5.77607 5.90249 6.02423 6.05039 6.11568 6.17802 6.21798 6.33633 6.37103 6.46779 6.49909 6.51711 6.68602 6.72019 6.91503 6.97794 7.57074 7.66948 7.78785 7.98147 8.23995 8.87147 9.41756 9.61064 11.06185 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039319 B = 0.003471 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.950226 B = 8066.022112 C = 8231.866566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.108 4.108 7 C -0.062 4.062 8 C -0.079 4.079 9 H 0.085 0.915 10 C -0.124 4.124 11 C 0.060 3.940 12 N -0.524 5.524 13 C 0.027 3.973 14 C 0.237 3.763 15 H 0.062 0.938 16 O -0.560 6.560 17 C -0.574 4.574 18 H 0.053 0.947 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.050 3.950 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.338 0.662 40 H 0.260 0.740 41 H 0.072 0.928 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 20.573 -3.224 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.126 4.126 7 C -0.063 4.063 8 C -0.098 4.098 9 H 0.103 0.897 10 C -0.163 4.163 11 C -0.067 4.067 12 N -0.248 5.248 13 C -0.101 4.101 14 C 0.179 3.821 15 H 0.080 0.920 16 O -0.362 6.362 17 C -0.613 4.613 18 H 0.071 0.929 19 C -0.126 4.126 20 N -0.493 5.493 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.078 4.078 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.181 0.819 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.979 20.023 -3.257 20.383 hybrid contribution -2.001 -0.137 0.742 2.138 sum -0.022 19.886 -2.515 20.045 Atomic orbital electron populations 1.20860 0.91522 1.02716 1.02373 1.19788 0.95935 0.92678 1.00291 1.20962 0.94278 0.97203 1.01588 1.21076 0.94277 0.97927 1.01156 1.21122 0.99778 0.92508 1.00874 1.21094 0.93743 0.98364 0.99371 1.19633 0.93616 0.93835 0.99180 1.21531 0.99394 0.91804 0.97092 0.89729 1.22931 1.01820 0.95305 0.96195 1.23042 0.99331 0.95081 0.89250 1.63636 1.52954 1.05600 1.02608 1.23243 0.92844 0.97220 0.96752 1.19343 0.97309 0.85952 0.79519 0.91993 1.86616 1.29814 1.91743 1.28011 1.21607 1.24464 0.91854 1.23344 0.92882 1.25017 0.94871 0.98171 0.94532 1.70072 1.34988 1.11734 1.32529 0.86747 0.81084 0.79747 0.80821 1.20245 1.21199 1.20169 1.22967 1.00684 0.88610 0.95567 0.91219 0.91759 0.91059 0.86441 0.86455 0.86254 0.85511 0.91425 0.90826 0.93982 0.88985 0.91641 0.96021 0.81861 0.92966 0.90941 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.38 36.01 0.34 -0.76 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 5 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 6 C -0.11 -1.30 8.10 -39.59 -0.32 -1.62 16 7 C -0.06 -0.77 4.94 -104.63 -0.52 -1.28 16 8 C -0.08 -1.04 2.90 -89.95 -0.26 -1.30 16 9 H 0.08 1.06 5.63 -51.93 -0.29 0.77 16 10 C -0.12 -1.70 6.47 -24.59 -0.16 -1.85 16 11 C 0.06 1.02 5.02 -2.27 -0.01 1.01 16 12 N -0.52 -9.66 5.16 -231.21 -1.19 -10.85 16 13 C 0.03 0.57 4.36 -3.82 -0.02 0.55 16 14 C 0.24 6.02 3.08 -27.89 -0.09 5.93 16 15 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 16 O -0.56 -14.05 10.02 -35.23 -0.35 -14.41 16 17 C -0.57 -15.82 8.76 -34.44 -0.30 -16.12 16 18 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.05 0.77 6.34 -2.83 -0.02 0.75 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 28 H 0.07 0.67 6.14 -51.93 -0.32 0.36 16 29 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.13 1.54 7.30 -52.49 -0.38 1.16 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.00 7.09 -51.93 -0.37 0.63 16 35 H 0.04 0.72 6.84 -51.93 -0.36 0.36 16 36 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 37 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 38 H 0.02 0.44 7.85 -51.93 -0.41 0.04 16 39 H 0.34 7.66 8.41 45.56 0.38 8.04 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.10 6.76 -51.93 -0.35 0.75 16 42 H 0.05 0.74 7.55 -51.93 -0.39 0.35 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -30.23 331.03 -9.90 -40.12 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.78 Total: 7.84 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.24 Total: -19.13 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.48 Total: -35.62 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.35 Total: -14.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.23 -9.90 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929458239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.041 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds