Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.99698 * 2 1 4 4 C 1.38214 * 119.99810 * 180.20800 * 3 2 1 5 5 C 1.38255 * 120.00057 * 359.85977 * 4 3 2 6 6 C 1.38214 * 119.99981 * 359.95697 * 5 4 3 7 7 C 1.38216 * 120.00358 * 179.81605 * 2 1 3 8 8 C 1.50696 * 119.99962 * 359.97438 * 7 2 1 9 9 H 1.09003 * 110.76248 * 357.98151 * 8 7 2 10 10 C 1.55138 * 110.70648 * 121.17929 * 8 7 2 11 11 C 1.54908 * 101.68619 * 154.02039 * 10 8 7 12 12 N 1.47887 * 104.77420 * 322.97931 * 11 10 8 13 13 C 1.46907 * 111.01481 * 146.33028 * 12 11 10 14 14 C 1.52999 * 109.46903 * 69.12508 * 13 12 11 15 15 H 1.09000 * 109.47110 * 59.99847 * 14 13 12 16 16 O 1.42900 * 109.47169 * 299.99900 * 14 13 12 17 17 C 1.50695 * 109.47221 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99981 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00219 * 180.02562 * 17 14 13 20 20 N 1.31512 * 120.00134 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 120.00052 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.46991 * 59.99811 * 21 19 17 23 23 H 1.48506 * 109.47065 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46947 * 299.99870 * 21 19 17 25 25 C 1.47444 * 108.58784 * 24.04325 * 12 11 10 26 26 H 1.08996 * 109.46462 * 270.18052 * 1 2 3 27 27 H 1.08995 * 109.47366 * 30.18486 * 1 2 3 28 28 H 1.09001 * 109.46840 * 150.18854 * 1 2 3 29 29 H 1.08004 * 120.00309 * 0.05059 * 3 2 1 30 30 H 1.08009 * 119.99793 * 179.83333 * 4 3 2 31 31 H 1.08006 * 119.99851 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.99755 * 180.02562 * 6 5 4 33 33 H 1.09002 * 110.99302 * 272.13040 * 10 8 7 34 34 H 1.08995 * 110.99003 * 35.90927 * 10 8 7 35 35 H 1.08993 * 110.37866 * 81.77867 * 11 10 8 36 36 H 1.09005 * 110.37455 * 204.12444 * 11 10 8 37 37 H 1.09005 * 109.46832 * 189.12286 * 13 12 11 38 38 H 1.08994 * 109.46980 * 309.12661 * 13 12 11 39 39 H 0.96700 * 114.00331 * 300.00067 * 16 14 13 40 40 H 0.97006 * 120.00548 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.89066 * 239.63908 * 25 12 11 42 42 H 1.09001 * 109.89084 * 118.44467 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0043 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1969 -0.0019 7 6 2.1982 -1.1969 0.0038 8 6 1.4448 -2.5020 0.0086 9 1 0.3694 -2.3273 0.0443 10 6 1.8207 -3.3570 -1.2301 11 6 1.5355 -4.7914 -0.7197 12 7 1.9498 -4.7759 0.6999 13 6 1.0941 -5.6550 1.5081 14 6 1.3655 -7.1139 1.1355 15 1 2.4123 -7.3492 1.3274 16 8 1.0788 -7.3128 -0.2502 17 6 0.4882 -8.0157 1.9650 18 1 -0.1949 -7.5908 2.6855 19 6 0.5576 -9.3832 1.8040 20 7 1.3891 -9.9007 0.9263 21 14 -0.5304 -10.5011 2.8318 22 1 -1.9566 -10.1809 2.5698 23 1 -0.2669 -11.9172 2.4702 24 1 -0.2329 -10.2938 4.2718 25 6 1.8934 -3.3867 1.1908 26 1 -0.3632 0.0032 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1327 0.0008 30 1 4.1204 2.1328 -0.0071 31 1 5.3518 0.0002 -0.0096 32 1 4.1207 -2.1321 -0.0026 33 1 1.1853 -3.1118 -2.0812 34 1 2.8737 -3.2349 -1.4838 35 1 0.4728 -5.0193 -0.8020 36 1 2.1247 -5.5177 -1.2796 37 1 1.3129 -5.5032 2.5651 38 1 0.0474 -5.4196 1.3162 39 1 0.1627 -7.1218 -0.4938 40 1 1.4377 -10.8629 0.8127 41 1 2.8796 -3.0744 1.5342 42 1 1.1732 -3.3102 2.0054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929458239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -48.302450 kcal Electronic energy + Delta-G solvation = -21262.220272 eV Core-core repulsion = 18205.651952 eV Total energy + Delta-G solvation = -3056.568320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07273 -39.45344 -37.34682 -34.34941 -34.10803 -33.34397 -31.48891 -29.67427 -28.99284 -27.58467 -26.29429 -23.91223 -22.83501 -22.13010 -21.68600 -20.79456 -18.99694 -17.70937 -16.99084 -16.66738 -16.41393 -16.19642 -15.69339 -15.60295 -15.48613 -14.70568 -14.55142 -14.39547 -14.03011 -13.90395 -13.53480 -13.35498 -13.17306 -13.04569 -12.92007 -12.82959 -12.68729 -12.54120 -12.24602 -12.06569 -12.03671 -11.90838 -11.50664 -11.33781 -11.00633 -10.69770 -10.06574 -9.62201 -9.41883 -9.08282 -8.12427 -6.38976 0.47424 0.52534 1.40629 1.42550 1.50707 2.38808 2.85141 3.12771 3.18397 3.65413 3.81972 3.85796 4.07321 4.10555 4.24810 4.26319 4.29967 4.41950 4.43628 4.48560 4.55146 4.60466 4.73985 4.81556 4.83309 4.86494 4.97495 4.99090 5.04029 5.06590 5.21753 5.28255 5.30608 5.35093 5.62571 5.65113 5.67795 5.75165 5.82278 6.02006 6.17770 6.24987 6.28446 6.74203 7.33855 7.55832 8.91749 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039319 B = 0.003471 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.950226 B = 8066.022112 C = 8231.866566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.123 4.123 7 C -0.079 4.079 8 C -0.066 4.066 9 H 0.094 0.906 10 C -0.113 4.113 11 C 0.062 3.938 12 N -0.542 5.542 13 C 0.046 3.954 14 C 0.239 3.761 15 H 0.018 0.982 16 O -0.569 6.569 17 C -0.589 4.589 18 H 0.059 0.941 19 C 0.026 3.974 20 N -0.899 5.899 21 Si 0.961 3.039 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.269 1.269 25 C 0.051 3.949 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.349 0.651 40 H 0.261 0.739 41 H 0.072 0.928 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 22.723 -2.921 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.141 4.141 7 C -0.080 4.080 8 C -0.085 4.085 9 H 0.112 0.888 10 C -0.151 4.151 11 C -0.065 4.065 12 N -0.266 5.266 13 C -0.082 4.082 14 C 0.181 3.819 15 H 0.036 0.964 16 O -0.372 6.372 17 C -0.628 4.628 18 H 0.077 0.923 19 C -0.177 4.177 20 N -0.536 5.536 21 Si 0.785 3.215 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.076 4.076 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.771 22.196 -2.951 22.405 hybrid contribution -1.552 -0.734 0.621 1.825 sum -0.781 21.462 -2.330 21.603 Atomic orbital electron populations 1.20892 0.90282 1.03418 1.02838 1.20050 0.97008 0.92575 0.99851 1.21299 0.94622 0.97801 1.00731 1.21430 0.94530 0.98627 0.99782 1.21366 1.00761 0.92357 1.00618 1.21133 0.93940 0.98670 1.00362 1.19581 0.93689 0.93763 1.00931 1.21391 1.00010 0.91818 0.95255 0.88790 1.22841 1.02187 0.92996 0.97112 1.22925 0.98597 0.96691 0.88308 1.63500 1.52662 1.07263 1.03177 1.22831 0.93547 0.94919 0.96894 1.19118 0.94535 0.88746 0.79522 0.96439 1.86565 1.30717 1.92126 1.27812 1.22007 1.24567 0.92637 1.23550 0.92323 1.25905 0.96220 0.99866 0.95662 1.70221 1.36852 1.12036 1.34448 0.85600 0.79356 0.77379 0.79141 1.19116 1.21018 1.19381 1.22957 1.00887 0.87160 0.96629 0.90814 0.90046 0.91391 0.84115 0.83952 0.84726 0.86591 0.89499 0.91004 0.94095 0.91693 0.91829 0.95320 0.80663 0.93001 0.91013 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 9.38 71.24 0.67 -1.22 16 2 C -0.09 -1.91 5.88 -19.86 -0.12 -2.02 16 3 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 4 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 5 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 6 C -0.12 -2.87 8.10 22.27 0.18 -2.69 16 7 C -0.08 -1.85 4.94 -19.87 -0.10 -1.95 16 8 C -0.07 -1.65 2.90 -10.36 -0.03 -1.68 16 9 H 0.09 2.19 5.63 -2.39 -0.01 2.18 16 10 C -0.11 -3.01 6.47 31.98 0.21 -2.80 16 11 C 0.06 2.13 5.02 86.77 0.44 2.57 16 12 N -0.54 -20.29 5.16 -885.40 -4.57 -24.86 16 13 C 0.05 1.97 4.36 86.30 0.38 2.34 16 14 C 0.24 12.54 3.08 29.85 0.09 12.63 16 15 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 16 O -0.57 -29.46 10.02 -148.98 -1.49 -30.95 16 17 C -0.59 -32.85 8.76 25.60 0.22 -32.62 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.03 1.47 5.40 84.65 0.46 1.93 16 20 N -0.90 -54.56 12.84 21.45 0.28 -54.28 16 21 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.05 1.56 6.34 86.65 0.55 2.11 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 28 H 0.07 1.12 6.14 -2.39 -0.01 1.11 16 29 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 30 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.12 2.86 7.30 -2.91 -0.02 2.84 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.94 7.09 -2.39 -0.02 1.92 16 35 H 0.04 1.40 6.84 -2.39 -0.02 1.38 16 36 H 0.06 2.56 7.39 -2.38 -0.02 2.54 16 37 H 0.06 2.68 8.03 -2.38 -0.02 2.66 16 38 H 0.03 1.17 7.85 -2.39 -0.02 1.15 16 39 H 0.35 16.13 8.41 -74.06 -0.62 15.50 16 40 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.07 2.18 6.76 -2.39 -0.02 2.17 16 42 H 0.05 1.51 7.55 -2.39 -0.02 1.49 16 Total: -1.00 -65.53 331.03 0.23 -65.29 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.38 Total: 28.83 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.61 Total: -29.71 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -4.29 Total: -79.15 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.49 Total: -30.95 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.53 0.23 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929458239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.992 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds