Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00250 * 2 1 4 4 C 1.38212 * 120.00284 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.95673 * 5 4 3 7 7 C 1.38218 * 120.00025 * 179.97438 * 2 1 3 8 8 C 1.50706 * 119.99800 * 0.04386 * 7 2 1 9 9 H 1.08998 * 110.64623 * 1.63045 * 8 7 2 10 10 C 1.54594 * 110.71951 * 238.47843 * 8 7 2 11 11 C 1.54001 * 105.13635 * 219.68315 * 10 8 7 12 12 N 1.47894 * 107.05751 * 358.77602 * 11 10 8 13 13 C 1.46904 * 111.00015 * 145.84148 * 12 11 10 14 14 C 1.53000 * 109.46982 * 69.87246 * 13 12 11 15 15 H 1.09003 * 109.46981 * 59.99721 * 14 13 12 16 16 O 1.42896 * 109.47149 * 300.00495 * 14 13 12 17 17 C 1.50693 * 109.47405 * 180.02562 * 14 13 12 18 18 H 1.07998 * 119.99902 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00419 * 180.02562 * 17 14 13 20 20 N 1.31511 * 119.99862 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00440 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47052 * 59.99806 * 21 19 17 23 23 H 1.48492 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47012 * 300.00187 * 21 19 17 25 25 C 1.48531 * 105.82349 * 25.33212 * 12 11 10 26 26 H 1.08998 * 109.47226 * 89.99641 * 1 2 3 27 27 H 1.09005 * 109.47210 * 209.99674 * 1 2 3 28 28 H 1.08994 * 109.47085 * 329.99340 * 1 2 3 29 29 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.99798 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00419 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.00164 * 179.72593 * 6 5 4 33 33 H 1.08999 * 110.31167 * 338.60282 * 10 8 7 34 34 H 1.09004 * 110.31160 * 100.67360 * 10 8 7 35 35 H 1.09001 * 109.91436 * 118.12924 * 11 10 8 36 36 H 1.08997 * 109.91828 * 239.42180 * 11 10 8 37 37 H 1.08997 * 109.47248 * 189.87604 * 13 12 11 38 38 H 1.09005 * 109.47168 * 309.87701 * 13 12 11 39 39 H 0.96703 * 114.00050 * 299.99666 * 16 14 13 40 40 H 0.97008 * 120.00377 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.66999 * 202.35610 * 25 12 11 42 42 H 1.09000 * 110.66856 * 79.22390 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0001 9 1 0.3694 -2.3251 -0.0296 10 6 1.8249 -3.3537 1.2330 11 6 1.9068 -4.8008 0.7125 12 7 1.5607 -4.7650 -0.7249 13 6 2.3243 -5.7707 -1.4756 14 6 1.8296 -7.1696 -1.1025 15 1 0.7715 -7.2585 -1.3487 16 8 2.0118 -7.3813 0.2989 17 6 2.6133 -8.2014 -1.8720 18 1 3.3872 -7.8905 -2.5581 19 6 2.3425 -9.5423 -1.7000 20 7 1.4005 -9.9209 -0.8641 21 14 3.3135 -10.8213 -2.6544 22 1 4.7550 -10.7005 -2.3185 23 1 2.8334 -12.1790 -2.2922 24 1 3.1245 -10.6010 -4.1108 25 6 1.8906 -3.3924 -1.1869 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 0.0005 32 1 4.1206 -2.1323 -0.0036 33 1 2.7908 -3.0382 1.6274 34 1 1.0572 -3.2698 2.0023 35 1 2.9187 -5.1849 0.8413 36 1 1.1969 -5.4295 1.2498 37 1 2.1853 -5.6092 -2.5445 38 1 3.3825 -5.6819 -1.2292 39 1 2.9317 -7.3169 0.5901 40 1 1.2101 -10.8644 -0.7428 41 1 1.3281 -3.1438 -2.0869 42 1 2.9618 -3.2923 -1.3616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929458240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -29.172073 kcal Electronic energy + Delta-G solvation = -21257.680648 eV Core-core repulsion = 18201.941883 eV Total energy + Delta-G solvation = -3055.738765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07555 -38.16545 -35.56552 -33.22737 -32.36374 -32.04874 -30.23421 -28.17625 -27.63574 -26.73579 -24.48581 -22.90988 -21.30580 -21.13441 -20.23536 -19.53247 -16.99070 -16.68617 -15.97797 -15.14016 -14.97748 -14.59171 -14.42006 -14.16732 -13.93144 -13.78244 -13.32849 -13.17690 -12.91524 -12.63499 -12.46792 -12.27770 -12.00502 -11.68677 -11.30726 -11.24144 -11.14364 -11.03633 -10.89511 -10.80081 -10.57936 -10.41485 -10.15679 -9.99044 -8.97807 -8.84756 -8.59581 -8.54374 -8.10250 -7.69610 -5.98110 -4.16580 1.28162 1.31316 3.29836 3.35253 3.36853 3.66009 4.34662 4.48961 4.71040 4.80878 4.91052 4.94821 5.04647 5.11577 5.22851 5.28645 5.32751 5.42838 5.52203 5.60967 5.62917 5.73642 5.79725 5.98111 6.00869 6.03906 6.09779 6.15825 6.16476 6.32420 6.36503 6.43319 6.47137 6.50965 6.66416 6.74430 6.90804 6.95374 7.50923 7.59564 7.78489 7.97188 8.23423 8.86763 9.41329 9.60722 11.05943 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.003523 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.286160 B = 7945.117845 C = 8227.449488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.065 4.065 8 C -0.060 4.060 9 H 0.094 0.906 10 C -0.126 4.126 11 C 0.052 3.948 12 N -0.511 5.511 13 C 0.024 3.976 14 C 0.237 3.763 15 H 0.063 0.937 16 O -0.560 6.560 17 C -0.574 4.574 18 H 0.053 0.947 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C 0.042 3.958 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.338 0.662 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 20.654 3.019 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.065 4.065 8 C -0.079 4.079 9 H 0.112 0.888 10 C -0.164 4.164 11 C -0.076 4.076 12 N -0.235 5.235 13 C -0.104 4.104 14 C 0.179 3.821 15 H 0.080 0.920 16 O -0.362 6.362 17 C -0.613 4.613 18 H 0.071 0.929 19 C -0.126 4.126 20 N -0.493 5.493 21 Si 0.716 3.284 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.086 4.086 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.182 0.818 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.695 20.276 2.988 20.507 hybrid contribution 2.210 -0.490 -0.583 2.338 sum 2.905 19.786 2.405 20.142 Atomic orbital electron populations 1.20876 0.91308 1.02846 1.02528 1.19799 0.96077 0.92549 0.99947 1.20982 0.94247 0.97287 1.01431 1.21072 0.94318 0.97881 1.01131 1.21099 0.99726 0.92529 1.00946 1.21028 0.93822 0.98109 0.99923 1.19726 0.93522 0.94206 0.99081 1.21189 1.00016 0.90694 0.95991 0.88784 1.22637 1.01294 0.95510 0.96982 1.22848 1.00457 0.94563 0.89721 1.64802 1.54057 1.01810 1.02815 1.23206 0.94133 0.95436 0.97638 1.19338 0.97275 0.86223 0.79244 0.91967 1.86616 1.28483 1.94751 1.26339 1.21603 1.21144 0.91785 1.26742 0.92868 1.25018 0.94585 0.98563 0.94427 1.70073 1.29590 1.15976 1.33681 0.86743 0.80429 0.80699 0.80508 1.20242 1.21197 1.20158 1.23293 0.98520 0.89643 0.97111 0.91071 0.90784 0.91789 0.86350 0.86420 0.86333 0.86155 0.91883 0.91345 0.94169 0.89121 0.91529 0.95929 0.81848 0.92962 0.90675 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.38 36.01 0.34 -0.76 16 2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 5 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 6 C -0.11 -1.33 8.15 -39.58 -0.32 -1.65 16 7 C -0.06 -0.80 4.93 -104.62 -0.52 -1.31 16 8 C -0.06 -0.80 3.03 -89.91 -0.27 -1.07 16 9 H 0.09 1.21 5.61 -51.93 -0.29 0.92 16 10 C -0.13 -1.73 6.42 -25.37 -0.16 -1.89 16 11 C 0.05 0.89 5.04 -2.75 -0.01 0.87 16 12 N -0.51 -9.45 5.27 -230.45 -1.21 -10.66 16 13 C 0.02 0.50 4.55 -3.82 -0.02 0.48 16 14 C 0.24 6.04 3.08 -27.89 -0.09 5.96 16 15 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 16 O -0.56 -14.12 10.04 -35.23 -0.35 -14.47 16 17 C -0.57 -15.85 8.76 -34.44 -0.30 -16.15 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 20 N -0.86 -25.50 12.84 55.43 0.71 -24.78 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.04 0.65 5.92 -1.90 -0.01 0.64 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.70 6.13 -51.93 -0.32 0.38 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.44 7.27 -52.49 -0.38 1.06 16 33 H 0.06 0.82 7.06 -51.93 -0.37 0.45 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.70 6.77 -51.93 -0.35 0.34 16 36 H 0.09 1.73 7.37 -51.93 -0.38 1.34 16 37 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 38 H 0.02 0.47 7.82 -51.93 -0.41 0.06 16 39 H 0.34 7.71 8.40 45.56 0.38 8.09 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 LS Contribution 331.47 15.07 5.00 5.00 Total: -1.00 -30.30 331.47 -9.94 -40.24 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.81 Total: 7.68 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.26 Total: -19.24 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.50 Total: -35.45 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.35 Total: -14.47 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.30 -9.94 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929458240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.071 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds