Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00250 * 2 1 4 4 C 1.38212 * 120.00284 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00294 * 359.95673 * 5 4 3 7 7 C 1.38218 * 120.00025 * 179.97438 * 2 1 3 8 8 C 1.50706 * 119.99800 * 0.04386 * 7 2 1 9 9 H 1.08998 * 110.64623 * 1.63045 * 8 7 2 10 10 C 1.54594 * 110.71951 * 238.47843 * 8 7 2 11 11 C 1.54001 * 105.13635 * 219.68315 * 10 8 7 12 12 N 1.47894 * 107.05751 * 358.77602 * 11 10 8 13 13 C 1.46904 * 111.00015 * 145.84148 * 12 11 10 14 14 C 1.53000 * 109.46982 * 69.87246 * 13 12 11 15 15 H 1.09003 * 109.46981 * 59.99721 * 14 13 12 16 16 O 1.42896 * 109.47149 * 300.00495 * 14 13 12 17 17 C 1.50693 * 109.47405 * 180.02562 * 14 13 12 18 18 H 1.07998 * 119.99902 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00419 * 180.02562 * 17 14 13 20 20 N 1.31511 * 119.99862 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00440 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47052 * 59.99806 * 21 19 17 23 23 H 1.48492 * 109.47245 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47012 * 300.00187 * 21 19 17 25 25 C 1.48531 * 105.82349 * 25.33212 * 12 11 10 26 26 H 1.08998 * 109.47226 * 89.99641 * 1 2 3 27 27 H 1.09005 * 109.47210 * 209.99674 * 1 2 3 28 28 H 1.08994 * 109.47085 * 329.99340 * 1 2 3 29 29 H 1.07999 * 119.99740 * 0.02562 * 3 2 1 30 30 H 1.08001 * 119.99798 * 180.02562 * 4 3 2 31 31 H 1.08000 * 120.00419 * 179.97438 * 5 4 3 32 32 H 1.07995 * 120.00164 * 179.72593 * 6 5 4 33 33 H 1.08999 * 110.31167 * 338.60282 * 10 8 7 34 34 H 1.09004 * 110.31160 * 100.67360 * 10 8 7 35 35 H 1.09001 * 109.91436 * 118.12924 * 11 10 8 36 36 H 1.08997 * 109.91828 * 239.42180 * 11 10 8 37 37 H 1.08997 * 109.47248 * 189.87604 * 13 12 11 38 38 H 1.09005 * 109.47168 * 309.87701 * 13 12 11 39 39 H 0.96703 * 114.00050 * 299.99666 * 16 14 13 40 40 H 0.97008 * 120.00377 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.66999 * 202.35610 * 25 12 11 42 42 H 1.09000 * 110.66856 * 79.22390 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0001 9 1 0.3694 -2.3251 -0.0296 10 6 1.8249 -3.3537 1.2330 11 6 1.9068 -4.8008 0.7125 12 7 1.5607 -4.7650 -0.7249 13 6 2.3243 -5.7707 -1.4756 14 6 1.8296 -7.1696 -1.1025 15 1 0.7715 -7.2585 -1.3487 16 8 2.0118 -7.3813 0.2989 17 6 2.6133 -8.2014 -1.8720 18 1 3.3872 -7.8905 -2.5581 19 6 2.3425 -9.5423 -1.7000 20 7 1.4005 -9.9209 -0.8641 21 14 3.3135 -10.8213 -2.6544 22 1 4.7550 -10.7005 -2.3185 23 1 2.8334 -12.1790 -2.2922 24 1 3.1245 -10.6010 -4.1108 25 6 1.8906 -3.3924 -1.1869 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6583 2.1326 0.0004 30 1 4.1204 2.1326 0.0010 31 1 5.3517 -0.0001 0.0005 32 1 4.1206 -2.1323 -0.0036 33 1 2.7908 -3.0382 1.6274 34 1 1.0572 -3.2698 2.0023 35 1 2.9187 -5.1849 0.8413 36 1 1.1969 -5.4295 1.2498 37 1 2.1853 -5.6092 -2.5445 38 1 3.3825 -5.6819 -1.2292 39 1 2.9317 -7.3169 0.5901 40 1 1.2101 -10.8644 -0.7428 41 1 1.3281 -3.1438 -2.0869 42 1 2.9618 -3.2923 -1.3616 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929458240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = -48.495406 kcal Electronic energy + Delta-G solvation = -21258.518570 eV Core-core repulsion = 18201.941883 eV Total energy + Delta-G solvation = -3056.576687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06591 -39.44203 -37.36467 -34.37413 -34.12693 -33.35836 -31.49522 -29.67301 -29.01097 -27.59832 -26.27827 -23.91916 -22.88101 -22.13623 -21.72086 -20.64602 -19.01246 -17.67689 -17.07111 -16.67851 -16.40366 -16.24021 -15.85855 -15.53040 -15.32337 -14.80701 -14.63607 -14.49977 -13.98148 -13.82717 -13.57412 -13.39559 -13.17984 -13.02574 -12.96419 -12.85141 -12.71534 -12.32330 -12.31131 -12.17685 -12.00414 -11.82348 -11.53901 -11.25301 -11.02612 -10.70396 -10.09191 -9.66594 -9.41276 -9.20829 -8.13087 -6.39643 0.46360 0.50944 1.40271 1.42139 1.50357 2.38329 2.84188 3.11776 3.14512 3.71150 3.81461 3.91847 4.05287 4.09777 4.23403 4.24827 4.29081 4.38156 4.43300 4.48071 4.50705 4.64297 4.76207 4.77660 4.84978 4.87467 4.91259 4.98833 5.03662 5.12057 5.17265 5.25189 5.32162 5.36688 5.61747 5.63708 5.65374 5.73053 5.82227 6.00175 6.13421 6.17035 6.24837 6.73139 7.32889 7.54071 8.91128 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.003523 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.286160 B = 7945.117845 C = 8227.449488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.126 4.126 5 C -0.133 4.133 6 C -0.125 4.125 7 C -0.081 4.081 8 C -0.048 4.048 9 H 0.098 0.902 10 C -0.116 4.116 11 C 0.055 3.945 12 N -0.527 5.527 13 C 0.042 3.958 14 C 0.239 3.761 15 H 0.020 0.980 16 O -0.569 6.569 17 C -0.590 4.590 18 H 0.058 0.942 19 C 0.026 3.974 20 N -0.898 5.898 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.044 3.956 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.348 0.652 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 22.632 2.719 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.067 4.067 9 H 0.116 0.884 10 C -0.155 4.155 11 C -0.073 4.073 12 N -0.251 5.251 13 C -0.086 4.086 14 C 0.181 3.819 15 H 0.038 0.962 16 O -0.372 6.372 17 C -0.628 4.628 18 H 0.076 0.924 19 C -0.176 4.176 20 N -0.535 5.535 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.210 1.210 24 H -0.193 1.193 25 C -0.083 4.083 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.193 0.807 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.769 22.275 2.685 22.506 hybrid contribution 1.862 -1.024 -0.465 2.175 sum 3.631 21.251 2.220 21.673 Atomic orbital electron populations 1.20904 0.90220 1.03448 1.02952 1.20053 0.97062 0.92522 0.99590 1.21311 0.94616 0.97835 1.00586 1.21432 0.94537 0.98635 0.99740 1.21352 1.00736 0.92359 1.00641 1.21090 0.93898 0.98552 1.00793 1.19648 0.93661 0.93959 1.00913 1.21062 1.00402 0.90916 0.94325 0.88406 1.22554 1.02281 0.93146 0.97470 1.22733 0.99209 0.96499 0.88842 1.64688 1.54005 1.03011 1.03444 1.22795 0.94292 0.93733 0.97786 1.19116 0.94777 0.88764 0.79217 0.96238 1.86564 1.29385 1.95062 1.26214 1.21999 1.21245 0.92679 1.26888 0.92369 1.25902 0.95527 1.00877 0.95321 1.70220 1.31379 1.16412 1.35497 0.85598 0.79103 0.77635 0.79134 1.19193 1.20964 1.19333 1.23317 0.98780 0.88025 0.98184 0.90684 0.91341 0.90054 0.84047 0.83915 0.84724 0.86868 0.90904 0.90298 0.94713 0.91681 0.91612 0.95482 0.80720 0.92977 0.90429 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.38 71.24 0.67 -1.27 16 2 C -0.09 -1.85 5.88 -19.86 -0.12 -1.97 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 4 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 5 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 6 C -0.13 -2.84 8.15 22.27 0.18 -2.66 16 7 C -0.08 -1.88 4.93 -19.86 -0.10 -1.98 16 8 C -0.05 -1.24 3.03 -10.33 -0.03 -1.27 16 9 H 0.10 2.42 5.61 -2.39 -0.01 2.41 16 10 C -0.12 -3.12 6.42 31.48 0.20 -2.92 16 11 C 0.06 1.91 5.04 86.45 0.44 2.34 16 12 N -0.53 -19.79 5.27 -883.01 -4.65 -24.44 16 13 C 0.04 1.81 4.55 86.30 0.39 2.20 16 14 C 0.24 12.59 3.08 29.85 0.09 12.69 16 15 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 16 O -0.57 -29.64 10.04 -148.98 -1.50 -31.14 16 17 C -0.59 -32.97 8.76 25.60 0.22 -32.75 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.03 1.49 5.40 84.65 0.46 1.95 16 20 N -0.90 -54.54 12.84 21.45 0.28 -54.26 16 21 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 C 0.04 1.34 5.92 86.65 0.51 1.86 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.18 6.13 -2.38 -0.01 1.17 16 28 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 29 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.11 2.64 7.27 -2.91 -0.02 2.62 16 33 H 0.07 1.82 7.06 -2.39 -0.02 1.80 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.03 1.22 6.77 -2.39 -0.02 1.21 16 36 H 0.06 2.57 7.37 -2.39 -0.02 2.55 16 37 H 0.07 2.77 8.11 -2.39 -0.02 2.75 16 38 H 0.03 1.12 7.82 -2.38 -0.02 1.10 16 39 H 0.35 16.30 8.40 -74.06 -0.62 15.68 16 40 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.26 6.70 -2.39 -0.02 1.24 16 Total: -1.00 -65.48 331.47 0.12 -65.35 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.38 Total: 28.63 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.58 Total: -29.91 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.37 Total: -78.70 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.50 Total: -31.14 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.48 0.12 -65.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929458240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.856 kcal (2) G-P(sol) polarization free energy of solvation -65.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds