Wall clock time and date at job start Mon Mar 30 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.01972 * 2 1 4 4 C 1.38057 * 119.88733 * 180.13258 * 3 2 1 5 5 C 1.50696 * 119.75830 * 179.97438 * 4 3 2 6 6 C 1.38611 * 120.48132 * 0.23106 * 4 3 2 7 7 C 1.38377 * 119.86785 * 359.21411 * 6 4 3 8 8 C 1.37806 * 120.02268 * 179.97438 * 2 1 3 9 9 N 1.39398 * 122.95166 * 181.15901 * 7 6 4 10 10 C 1.46895 * 111.00221 * 214.20839 * 9 7 6 11 11 C 1.53004 * 109.47374 * 71.42070 * 10 9 7 12 12 H 1.08998 * 109.46913 * 54.27131 * 11 10 9 13 13 O 1.42903 * 109.47075 * 294.26937 * 11 10 9 14 14 C 1.50695 * 109.47151 * 174.27048 * 11 10 9 15 15 H 1.08000 * 120.00542 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00182 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99640 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00391 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46979 * 59.99985 * 18 16 14 20 20 H 1.48499 * 109.47056 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47279 * 300.00048 * 18 16 14 22 22 C 1.46772 * 112.99793 * 339.11850 * 9 7 6 23 23 C 1.53372 * 108.41049 * 53.87450 * 22 9 7 24 24 C 1.50807 * 118.12723 * 179.13226 * 6 4 3 25 25 H 1.09001 * 109.47095 * 89.99486 * 1 2 3 26 26 H 1.09000 * 109.47325 * 209.99650 * 1 2 3 27 27 H 1.09004 * 109.47449 * 329.99857 * 1 2 3 28 28 H 1.07995 * 120.05902 * 0.11453 * 3 2 1 29 29 H 1.09000 * 109.47579 * 89.99728 * 5 4 3 30 30 H 1.09006 * 109.47036 * 329.99271 * 5 4 3 31 31 H 1.09000 * 109.47072 * 210.00163 * 5 4 3 32 32 H 1.08001 * 119.79525 * 0.05998 * 8 2 1 33 33 H 1.09000 * 109.47941 * 191.42306 * 10 9 7 34 34 H 1.09000 * 109.47039 * 311.42042 * 10 9 7 35 35 H 0.96698 * 113.99754 * 299.99729 * 13 11 10 36 36 H 0.96998 * 119.99934 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.97500 * 294.06190 * 22 9 7 38 38 H 1.09000 * 109.63367 * 173.49161 * 22 9 7 39 39 H 1.08999 * 109.77193 * 171.94661 * 23 22 9 40 40 H 1.09005 * 109.80984 * 51.19231 * 23 22 9 41 41 H 1.08997 * 109.44096 * 284.38111 * 24 6 4 42 42 H 1.09003 * 109.43843 * 44.25941 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1976 0.0000 4 6 3.5795 1.1944 -0.0028 5 6 4.3305 2.5009 -0.0033 6 6 4.2799 -0.0017 -0.0104 7 6 3.5926 -1.2027 0.0012 8 6 2.1965 -1.1932 0.0005 9 7 4.2314 -2.4416 0.0182 10 6 3.4674 -3.4383 -0.7439 11 6 3.5723 -3.1276 -2.2384 12 1 4.6224 -3.0599 -2.5226 13 8 2.9232 -1.8845 -2.5132 14 6 2.9082 -4.2263 -3.0277 15 1 2.4568 -5.0627 -2.5148 16 6 2.8777 -4.1642 -4.4047 17 7 3.4277 -3.1459 -5.0294 18 14 2.0551 -5.5264 -5.3832 19 1 0.6243 -5.6189 -4.9964 20 1 2.1568 -5.2247 -6.8336 21 1 2.7297 -6.8181 -5.0972 22 6 5.6179 -2.3786 -0.4590 23 6 6.3608 -1.3088 0.3511 24 6 5.7866 0.0568 -0.0332 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6603 2.1336 0.0019 29 1 4.5136 2.8153 1.0241 30 1 3.7390 3.2598 -0.5156 31 1 5.2821 2.3728 -0.5192 32 1 1.6535 -2.1268 0.0000 33 1 3.8715 -4.4319 -0.5502 34 1 2.4216 -3.4056 -0.4386 35 1 1.9837 -1.8724 -2.2845 36 1 3.4066 -3.1024 -5.9982 37 1 5.6361 -2.1147 -1.5165 38 1 6.0991 -3.3460 -0.3152 39 1 7.4246 -1.3409 0.1159 40 1 6.2135 -1.4840 1.4168 41 1 6.1242 0.3235 -1.0347 42 1 6.1313 0.8082 0.6772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929965725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:57 Heat of formation + Delta-G solvation = -28.145780 kcal Electronic energy + Delta-G solvation = -22568.706356 eV Core-core repulsion = 19513.012094 eV Total energy + Delta-G solvation = -3055.694261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32913 -37.20512 -35.57580 -33.95884 -32.12692 -31.79367 -30.54192 -28.11454 -27.29975 -26.11305 -25.10645 -23.60380 -22.01835 -21.34452 -19.36724 -18.69352 -17.13099 -16.00125 -15.80367 -15.32559 -14.64017 -14.44346 -14.14390 -13.87430 -13.49317 -13.27962 -13.20405 -12.98122 -12.84034 -12.73179 -12.47218 -12.15380 -11.70585 -11.68403 -11.44668 -11.09865 -10.99628 -10.93999 -10.87232 -10.58161 -10.56133 -10.35241 -10.08605 -9.86496 -9.65099 -8.77490 -8.56929 -8.34790 -7.82434 -6.79706 -6.02314 -4.22495 1.92473 2.05538 3.26311 3.32041 3.33468 4.10381 4.36482 4.59148 5.04620 5.15138 5.22664 5.24006 5.35392 5.39872 5.55690 5.63826 5.71896 5.77812 5.81899 5.92193 5.94152 5.96881 6.05706 6.06932 6.11500 6.15141 6.17669 6.21992 6.25408 6.39677 6.51920 6.58944 6.63881 6.74783 6.85392 7.04770 7.17819 7.35296 7.62673 7.63842 7.79403 7.99672 8.15062 8.79438 9.36216 9.54795 11.00264 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.006424 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.780233 B = 4357.599043 C = 5002.937071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.062 4.062 3 C -0.163 4.163 4 C -0.060 4.060 5 C -0.111 4.111 6 C -0.134 4.134 7 C 0.178 3.822 8 C -0.158 4.158 9 N -0.494 5.494 10 C 0.018 3.982 11 C 0.201 3.799 12 H 0.060 0.940 13 O -0.553 6.553 14 C -0.574 4.574 15 H 0.055 0.945 16 C 0.081 3.919 17 N -0.857 5.857 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.049 3.951 23 C -0.120 4.120 24 C -0.071 4.071 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.343 0.657 36 H 0.261 0.739 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.966 7.298 10.649 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.063 4.063 3 C -0.182 4.182 4 C -0.060 4.060 5 C -0.168 4.168 6 C -0.137 4.137 7 C 0.078 3.922 8 C -0.178 4.178 9 N -0.206 5.206 10 C -0.107 4.107 11 C 0.142 3.858 12 H 0.078 0.922 13 O -0.356 6.356 14 C -0.612 4.612 15 H 0.074 0.926 16 C -0.125 4.125 17 N -0.493 5.493 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.077 4.077 23 C -0.158 4.158 24 C -0.109 4.109 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.703 7.297 10.737 13.093 hybrid contribution -1.060 -0.901 -1.229 1.856 sum 0.643 6.396 9.508 11.477 Atomic orbital electron populations 1.20740 0.91936 1.01861 1.02158 1.19493 0.95220 0.92918 0.98667 1.20475 0.93211 0.96867 1.07620 1.19483 0.93522 0.93946 0.99092 1.20771 1.00064 0.94470 1.01457 1.19117 0.94812 0.91507 1.08290 1.18365 0.92140 0.88601 0.93094 1.20896 0.92653 0.97617 1.06632 1.58789 1.03488 1.06313 1.51982 1.23371 0.97617 0.93706 0.96031 1.19939 0.94955 0.83655 0.87250 0.92206 1.86629 1.24250 1.36494 1.88226 1.21540 1.39984 1.07829 0.91865 0.92640 1.25025 0.94475 0.95166 0.97884 1.70068 1.41958 1.28718 1.08515 0.86739 0.80158 0.82467 0.79021 1.20134 1.21221 1.20158 1.22250 0.87188 0.99322 0.98932 1.21703 0.98969 0.94613 1.00522 1.20441 0.91804 0.97290 1.01318 0.91252 0.92004 0.92230 0.87280 0.91821 0.92046 0.91697 0.86097 0.90628 0.90606 0.81302 0.92948 0.91744 0.90559 0.91253 0.91337 0.91214 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.00 0.36 -1.10 16 2 C -0.06 -1.02 5.87 -104.75 -0.61 -1.64 16 3 C -0.16 -2.60 9.35 -39.62 -0.37 -2.97 16 4 C -0.06 -0.97 5.88 -104.55 -0.61 -1.59 16 5 C -0.11 -1.41 9.21 36.00 0.33 -1.07 16 6 C -0.13 -2.37 5.74 -104.38 -0.60 -2.97 16 7 C 0.18 3.38 4.43 -83.85 -0.37 3.01 16 8 C -0.16 -2.86 6.31 -39.22 -0.25 -3.11 16 9 N -0.49 -9.34 4.76 -171.01 -0.81 -10.15 16 10 C 0.02 0.37 4.87 -3.82 -0.02 0.35 16 11 C 0.20 4.95 2.47 -27.88 -0.07 4.88 16 12 H 0.06 1.63 5.96 -51.93 -0.31 1.32 16 13 O -0.55 -14.14 10.44 -35.23 -0.37 -14.51 16 14 C -0.57 -15.46 8.76 -34.44 -0.30 -15.76 16 15 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 17 N -0.86 -25.20 12.84 55.43 0.71 -24.49 16 18 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.05 0.87 4.99 -3.70 -0.02 0.85 16 23 C -0.12 -1.75 6.18 -26.52 -0.16 -1.92 16 24 C -0.07 -1.08 4.54 -27.81 -0.13 -1.21 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 27 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.06 0.79 6.72 -51.93 -0.35 0.45 16 32 H 0.12 2.16 5.69 -52.49 -0.30 1.87 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.50 5.47 -51.93 -0.28 1.22 16 35 H 0.34 8.27 7.55 45.56 0.34 8.61 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.06 1.33 6.01 -51.93 -0.31 1.01 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.07 0.87 7.33 -51.93 -0.38 0.49 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -30.22 322.94 -9.31 -39.53 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.77 Total: 10.84 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.92 Total: -22.10 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.10 Total: -34.64 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.37 Total: -14.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.22 -9.31 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929965725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.385 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds