Wall clock time and date at job start Mon Mar 30 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.01972 * 2 1 4 4 C 1.38057 * 119.88733 * 180.13258 * 3 2 1 5 5 C 1.50696 * 119.75830 * 179.97438 * 4 3 2 6 6 C 1.38611 * 120.48132 * 0.23106 * 4 3 2 7 7 C 1.38377 * 119.86785 * 359.21411 * 6 4 3 8 8 C 1.37806 * 120.02268 * 179.97438 * 2 1 3 9 9 N 1.39398 * 122.95166 * 181.15901 * 7 6 4 10 10 C 1.46895 * 111.00221 * 214.20839 * 9 7 6 11 11 C 1.53004 * 109.47374 * 71.42070 * 10 9 7 12 12 H 1.08998 * 109.46913 * 54.27131 * 11 10 9 13 13 O 1.42903 * 109.47075 * 294.26937 * 11 10 9 14 14 C 1.50695 * 109.47151 * 174.27048 * 11 10 9 15 15 H 1.08000 * 120.00542 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00182 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99640 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 120.00391 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46979 * 59.99985 * 18 16 14 20 20 H 1.48499 * 109.47056 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47279 * 300.00048 * 18 16 14 22 22 C 1.46772 * 112.99793 * 339.11850 * 9 7 6 23 23 C 1.53372 * 108.41049 * 53.87450 * 22 9 7 24 24 C 1.50807 * 118.12723 * 179.13226 * 6 4 3 25 25 H 1.09001 * 109.47095 * 89.99486 * 1 2 3 26 26 H 1.09000 * 109.47325 * 209.99650 * 1 2 3 27 27 H 1.09004 * 109.47449 * 329.99857 * 1 2 3 28 28 H 1.07995 * 120.05902 * 0.11453 * 3 2 1 29 29 H 1.09000 * 109.47579 * 89.99728 * 5 4 3 30 30 H 1.09006 * 109.47036 * 329.99271 * 5 4 3 31 31 H 1.09000 * 109.47072 * 210.00163 * 5 4 3 32 32 H 1.08001 * 119.79525 * 0.05998 * 8 2 1 33 33 H 1.09000 * 109.47941 * 191.42306 * 10 9 7 34 34 H 1.09000 * 109.47039 * 311.42042 * 10 9 7 35 35 H 0.96698 * 113.99754 * 299.99729 * 13 11 10 36 36 H 0.96998 * 119.99934 * 179.97438 * 17 16 14 37 37 H 1.09006 * 109.97500 * 294.06190 * 22 9 7 38 38 H 1.09000 * 109.63367 * 173.49161 * 22 9 7 39 39 H 1.08999 * 109.77193 * 171.94661 * 23 22 9 40 40 H 1.09005 * 109.80984 * 51.19231 * 23 22 9 41 41 H 1.08997 * 109.44096 * 284.38111 * 24 6 4 42 42 H 1.09003 * 109.43843 * 44.25941 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1976 0.0000 4 6 3.5795 1.1944 -0.0028 5 6 4.3305 2.5009 -0.0033 6 6 4.2799 -0.0017 -0.0104 7 6 3.5926 -1.2027 0.0012 8 6 2.1965 -1.1932 0.0005 9 7 4.2314 -2.4416 0.0182 10 6 3.4674 -3.4383 -0.7439 11 6 3.5723 -3.1276 -2.2384 12 1 4.6224 -3.0599 -2.5226 13 8 2.9232 -1.8845 -2.5132 14 6 2.9082 -4.2263 -3.0277 15 1 2.4568 -5.0627 -2.5148 16 6 2.8777 -4.1642 -4.4047 17 7 3.4277 -3.1459 -5.0294 18 14 2.0551 -5.5264 -5.3832 19 1 0.6243 -5.6189 -4.9964 20 1 2.1568 -5.2247 -6.8336 21 1 2.7297 -6.8181 -5.0972 22 6 5.6179 -2.3786 -0.4590 23 6 6.3608 -1.3088 0.3511 24 6 5.7866 0.0568 -0.0332 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.6603 2.1336 0.0019 29 1 4.5136 2.8153 1.0241 30 1 3.7390 3.2598 -0.5156 31 1 5.2821 2.3728 -0.5192 32 1 1.6535 -2.1268 0.0000 33 1 3.8715 -4.4319 -0.5502 34 1 2.4216 -3.4056 -0.4386 35 1 1.9837 -1.8724 -2.2845 36 1 3.4066 -3.1024 -5.9982 37 1 5.6361 -2.1147 -1.5165 38 1 6.0991 -3.3460 -0.3152 39 1 7.4246 -1.3409 0.1159 40 1 6.2135 -1.4840 1.4168 41 1 6.1242 0.3235 -1.0347 42 1 6.1313 0.8082 0.6772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929965725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:56 Heat of formation + Delta-G solvation = -46.873374 kcal Electronic energy + Delta-G solvation = -22569.518445 eV Core-core repulsion = 19513.012094 eV Total energy + Delta-G solvation = -3056.506351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70212 -38.67539 -37.17452 -35.43456 -34.22580 -33.05474 -31.90225 -29.86190 -28.51397 -27.31901 -26.82931 -25.12439 -23.37681 -22.96099 -20.76832 -20.01961 -19.13001 -17.44430 -17.16383 -16.81953 -16.61531 -16.17054 -15.61805 -15.39500 -15.01457 -14.70081 -14.49863 -14.24639 -14.14972 -13.96305 -13.74596 -13.44644 -13.26571 -12.99816 -12.83762 -12.79236 -12.64920 -12.48258 -12.22711 -12.19349 -12.05029 -11.80150 -11.58499 -11.41392 -11.17340 -10.73245 -10.48715 -10.12166 -9.10241 -8.34969 -8.07913 -6.41467 0.63530 0.72467 1.38454 1.39627 1.47757 2.36363 2.76608 3.10375 3.22046 3.80144 3.91243 4.00205 4.12686 4.15152 4.21249 4.33543 4.50084 4.51915 4.54321 4.59308 4.64373 4.73912 4.74493 4.81107 4.88337 4.92723 4.94919 5.00108 5.03395 5.08949 5.16161 5.21265 5.33248 5.38170 5.55774 5.57574 5.65683 5.78488 5.90179 5.98993 6.12842 6.26381 6.60693 6.69719 7.29817 7.48574 8.88258 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.006424 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.780233 B = 4357.599043 C = 5002.937071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.070 4.070 3 C -0.170 4.170 4 C -0.069 4.069 5 C -0.108 4.108 6 C -0.155 4.155 7 C 0.148 3.852 8 C -0.177 4.177 9 N -0.490 5.490 10 C 0.033 3.967 11 C 0.206 3.794 12 H 0.028 0.972 13 O -0.564 6.564 14 C -0.587 4.587 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.898 5.898 18 Si 0.958 3.042 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.047 3.953 23 C -0.111 4.111 24 C -0.071 4.071 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.346 0.654 36 H 0.260 0.740 37 H 0.027 0.973 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 8.015 11.686 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 C -0.188 4.188 4 C -0.070 4.070 5 C -0.165 4.165 6 C -0.158 4.158 7 C 0.049 3.951 8 C -0.197 4.197 9 N -0.203 5.203 10 C -0.093 4.093 11 C 0.148 3.852 12 H 0.046 0.954 13 O -0.367 6.367 14 C -0.625 4.625 15 H 0.079 0.921 16 C -0.175 4.175 17 N -0.535 5.535 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.079 4.079 23 C -0.149 4.149 24 C -0.107 4.107 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.152 0.848 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.191 0.809 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.273 8.017 11.796 14.319 hybrid contribution -0.939 -1.044 -1.530 2.077 sum 0.334 6.973 10.266 12.415 Atomic orbital electron populations 1.20773 0.89783 1.03335 1.02502 1.19891 0.96957 0.92558 0.97640 1.20883 0.93543 0.97718 1.06704 1.19978 0.94107 0.95036 0.97852 1.20820 0.99867 0.92781 1.03001 1.19547 0.96363 0.91643 1.08281 1.18651 0.92793 0.88994 0.94621 1.20991 0.92666 0.98193 1.07870 1.58887 1.03664 1.06373 1.51345 1.23064 0.98455 0.94448 0.93355 1.19771 0.92849 0.82818 0.89811 0.95443 1.86589 1.24543 1.36913 1.88678 1.21970 1.39596 1.08432 0.92502 0.92125 1.25873 0.95057 0.97438 0.99088 1.70218 1.43710 1.30940 1.08619 0.85639 0.79354 0.79540 0.77202 1.19239 1.21201 1.19247 1.22285 0.87352 1.00967 0.97303 1.21691 0.99902 0.93090 1.00183 1.20492 0.90404 0.98300 1.01548 0.91317 0.91392 0.89969 0.84812 0.89707 0.90859 0.91440 0.86758 0.90334 0.90071 0.80921 0.93133 0.95517 0.89755 0.88680 0.90595 0.92159 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 10.01 71.23 0.71 -1.96 16 2 C -0.07 -2.24 5.87 -19.95 -0.12 -2.35 16 3 C -0.17 -5.15 9.35 22.25 0.21 -4.94 16 4 C -0.07 -2.14 5.88 -19.82 -0.12 -2.26 16 5 C -0.11 -2.45 9.21 71.23 0.66 -1.80 16 6 C -0.16 -5.42 5.74 -19.71 -0.11 -5.53 16 7 C 0.15 5.69 4.43 38.31 0.17 5.86 16 8 C -0.18 -6.48 6.31 22.50 0.14 -6.33 16 9 N -0.49 -18.84 4.76 -694.97 -3.31 -22.15 16 10 C 0.03 1.37 4.87 86.31 0.42 1.79 16 11 C 0.21 10.52 2.47 29.85 0.07 10.59 16 12 H 0.03 1.59 5.96 -2.39 -0.01 1.58 16 13 O -0.56 -29.82 10.44 -148.98 -1.56 -31.37 16 14 C -0.59 -32.13 8.76 25.60 0.22 -31.90 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.03 1.57 5.40 84.65 0.46 2.03 16 17 N -0.90 -54.07 12.84 21.45 0.28 -53.79 16 18 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.05 1.70 4.99 86.45 0.43 2.13 16 23 C -0.11 -3.11 6.18 30.73 0.19 -2.92 16 24 C -0.07 -2.05 4.54 29.90 0.14 -1.92 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 27 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 28 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.49 8.08 -2.38 -0.02 1.47 16 31 H 0.07 1.50 6.72 -2.39 -0.02 1.48 16 32 H 0.11 4.19 5.69 -2.91 -0.02 4.17 16 33 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 3.29 5.47 -2.39 -0.01 3.27 16 35 H 0.35 17.26 7.55 -74.06 -0.56 16.70 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.03 1.16 6.01 -2.38 -0.01 1.14 16 38 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 42 H 0.09 2.20 7.33 -2.39 -0.02 2.18 16 Total: -1.00 -65.88 322.94 1.37 -64.51 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.46 Total: 36.85 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 3.47 Total: -39.51 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.03 Total: -75.94 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.56 Total: -31.37 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.88 1.37 -64.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929965725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.638 kcal (2) G-P(sol) polarization free energy of solvation -65.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds