Wall clock time and date at job start Mon Mar 30 2020 01:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46905 * 109.24951 * 2 1 4 4 C 1.46904 * 110.99683 * 180.85731 * 3 2 1 5 5 C 1.53005 * 109.46736 * 185.74680 * 4 3 2 6 6 H 1.08996 * 109.47079 * 59.99617 * 5 4 3 7 7 O 1.42901 * 109.46890 * 300.00220 * 5 4 3 8 8 C 1.50694 * 109.46779 * 180.02562 * 5 4 3 9 9 H 1.08000 * 120.00445 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99615 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00441 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99805 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47021 * 89.99936 * 12 10 8 14 14 H 1.48497 * 109.47043 * 209.99877 * 12 10 8 15 15 H 1.48497 * 109.47167 * 330.00244 * 12 10 8 16 16 C 1.52730 * 109.22157 * 240.55214 * 2 1 3 17 17 C 1.53326 * 108.39643 * 290.83308 * 16 2 1 18 18 C 1.52732 * 108.38746 * 290.15939 * 17 16 2 19 19 C 1.50629 * 110.65393 * 50.91472 * 18 17 16 20 20 C 1.38918 * 117.76023 * 162.13666 * 19 18 17 21 21 C 1.37928 * 120.54351 * 179.64533 * 20 19 18 22 22 C 1.38263 * 119.77625 * 0.29273 * 21 20 19 23 23 C 1.37937 * 119.76613 * 0.14312 * 22 21 20 24 24 C 1.37661 * 122.55823 * 342.60454 * 19 18 17 25 25 H 1.09000 * 109.46693 * 300.53680 * 1 2 3 26 26 H 1.09006 * 109.46758 * 60.53213 * 1 2 3 27 27 H 1.09002 * 109.47087 * 180.53199 * 1 2 3 28 28 H 1.00897 * 110.99556 * 304.80946 * 3 2 1 29 29 H 1.08999 * 109.47063 * 305.74101 * 4 3 2 30 30 H 1.09000 * 109.46931 * 65.74664 * 4 3 2 31 31 H 0.96707 * 113.99601 * 299.99581 * 7 5 4 32 32 H 0.96997 * 120.00239 * 179.97438 * 11 10 8 33 33 H 1.08994 * 109.67828 * 50.55955 * 16 2 1 34 34 H 1.09005 * 109.67865 * 171.07422 * 16 2 1 35 35 H 1.09002 * 109.67745 * 49.87925 * 17 16 2 36 36 H 1.08992 * 109.67937 * 170.39849 * 17 16 2 37 37 H 1.09006 * 109.25417 * 171.41890 * 18 17 16 38 38 H 1.09004 * 109.25762 * 290.88878 * 18 17 16 39 39 H 1.08004 * 119.72411 * 359.92425 * 20 19 18 40 40 H 1.08002 * 120.11138 * 180.31229 * 21 20 19 41 41 H 1.07991 * 120.11636 * 180.15723 * 22 21 20 42 42 H 1.07998 * 119.72472 * 179.91675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0144 1.3869 0.0000 4 6 3.4826 1.4318 -0.0205 5 6 3.9505 2.8813 0.1245 6 1 3.5877 3.2874 1.0686 7 8 3.4349 3.6587 -0.9580 8 6 5.4566 2.9273 0.1028 9 1 6.0234 2.0142 -0.0033 10 6 6.1110 4.1354 0.2185 11 7 5.4209 5.2475 0.3472 12 14 7.9780 4.1925 0.1923 13 1 8.4488 4.3539 -1.2069 14 1 8.4496 5.3398 1.0087 15 1 8.5198 2.9292 0.7542 16 6 2.0329 -0.7090 -1.2558 17 6 1.7036 -2.2015 -1.1335 18 6 2.5919 -2.8033 -0.0466 19 6 2.5113 -1.9879 1.2173 20 6 2.9390 -2.5811 2.3984 21 6 2.8974 -1.8841 3.5879 22 6 2.4206 -0.5865 3.6071 23 6 1.9871 0.0012 2.4369 24 6 2.0267 -0.6996 1.2381 25 1 -0.3633 0.5222 0.8851 26 1 -0.3633 0.5056 -0.8948 27 1 -0.3633 -1.0276 0.0095 28 1 1.6259 1.9055 -0.7734 29 1 3.8758 0.8387 0.8052 30 1 3.8453 1.0255 -0.9647 31 1 3.7177 3.3536 -1.8310 32 1 5.8814 6.0973 0.4289 33 1 1.5381 -0.2947 -2.1342 34 1 3.1112 -0.5766 -1.3453 35 1 0.6554 -2.3250 -0.8611 36 1 1.8971 -2.6991 -2.0837 37 1 2.2669 -3.8233 0.1593 38 1 3.6249 -2.8185 -0.3941 39 1 3.3114 -3.5948 2.3843 40 1 3.2364 -2.3504 4.5013 41 1 2.3879 -0.0349 4.5349 42 1 1.6135 1.0144 2.4529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929971846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:52 Heat of formation + Delta-G solvation = -37.671158 kcal Electronic energy + Delta-G solvation = -22117.927417 eV Core-core repulsion = 19061.820104 eV Total energy + Delta-G solvation = -3056.107313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37935 -37.15167 -35.75745 -34.15169 -32.08411 -31.07479 -30.07671 -29.50768 -27.33940 -26.38478 -24.04122 -22.71019 -22.55313 -21.04738 -20.44684 -18.47314 -16.97615 -16.12149 -15.79069 -15.16554 -14.83171 -14.52963 -14.49447 -14.36063 -13.84436 -13.57556 -13.28866 -13.06210 -12.74317 -12.49371 -12.29410 -12.16456 -11.77196 -11.62248 -11.36944 -11.28747 -11.02624 -10.98637 -10.90021 -10.70796 -10.49641 -10.35009 -10.09265 -10.05140 -8.98284 -8.54463 -8.44302 -8.33564 -8.14935 -7.67983 -5.97067 -4.14824 1.61497 1.68334 3.28943 3.36047 3.39231 4.01656 4.38612 4.61299 4.73883 4.84685 4.99937 5.10837 5.23306 5.28126 5.30165 5.37214 5.47930 5.57809 5.65194 5.69504 5.84101 5.90474 5.92693 6.01363 6.03723 6.14117 6.17644 6.22799 6.32335 6.34280 6.39361 6.49597 6.58518 6.74009 6.82844 6.94458 7.00104 7.30132 7.61263 7.80321 7.89864 8.06276 8.28352 8.88902 9.42534 9.62366 11.07147 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.005521 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.179767 B = 5070.477573 C = 5545.914473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.150 3.850 3 N -0.672 5.672 4 C 0.036 3.964 5 C 0.235 3.765 6 H 0.061 0.939 7 O -0.565 6.565 8 C -0.571 4.571 9 H 0.053 0.947 10 C 0.080 3.920 11 N -0.858 5.858 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.151 4.151 17 C -0.116 4.116 18 C -0.079 4.079 19 C -0.079 4.079 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.056 4.056 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.344 0.656 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.339 0.661 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -15.438 0.304 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.059 3.941 3 N -0.303 5.303 4 C -0.093 4.093 5 C 0.177 3.823 6 H 0.079 0.921 7 O -0.367 6.367 8 C -0.609 4.609 9 H 0.071 0.929 10 C -0.126 4.126 11 N -0.494 5.494 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.191 4.191 17 C -0.154 4.154 18 C -0.116 4.116 19 C -0.079 4.079 20 C -0.150 4.150 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.102 4.102 24 C -0.056 4.056 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.163 0.837 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.182 0.818 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.934 -14.807 1.529 17.361 hybrid contribution 1.790 -0.539 -1.235 2.241 sum -7.144 -15.345 0.294 16.930 Atomic orbital electron populations 1.21877 0.93629 1.01353 1.02364 1.19686 0.94524 0.89061 0.90821 1.60669 1.09631 1.09343 1.50620 1.22865 0.85427 1.01948 0.99021 1.19384 0.91621 0.83559 0.87715 0.92095 1.86592 1.74646 1.59669 1.15753 1.21638 0.92302 0.93131 1.53874 0.92888 1.25016 0.97933 0.95738 0.93906 1.70080 1.34971 0.97750 1.46625 0.86712 0.86147 0.77704 0.78045 1.20592 1.21084 1.19884 1.22363 1.02480 0.95699 0.98513 1.21548 0.99879 0.95838 0.98117 1.20451 1.00515 0.97917 0.92734 1.19583 0.99266 0.94243 0.94844 1.21000 1.01842 0.99742 0.92431 1.20991 1.00342 0.95122 0.97614 1.21111 1.00163 0.95257 0.98410 1.21292 0.97532 1.00013 0.91356 1.19383 0.98654 0.92817 0.94791 0.91770 0.92541 0.92441 0.83662 0.91581 0.96367 0.81770 0.93057 0.91738 0.90914 0.91500 0.91913 0.91218 0.90956 0.86817 0.86680 0.86389 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.41 37.16 0.31 -1.38 16 2 C 0.15 2.19 0.51 -132.92 -0.07 2.12 16 3 N -0.67 -11.73 5.19 -101.30 -0.53 -12.25 16 4 C 0.04 0.75 4.45 -3.82 -0.02 0.73 16 5 C 0.23 5.98 3.10 -27.88 -0.09 5.89 16 6 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 7 O -0.56 -14.34 12.18 -35.23 -0.43 -14.77 16 8 C -0.57 -15.91 8.76 -34.44 -0.30 -16.21 16 9 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 10 C 0.08 2.27 5.40 -17.82 -0.10 2.18 16 11 N -0.86 -25.69 12.84 55.43 0.71 -24.98 16 12 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C -0.15 -2.02 4.65 -26.70 -0.12 -2.15 16 17 C -0.12 -1.29 5.93 -26.70 -0.16 -1.45 16 18 C -0.08 -0.93 5.67 -28.06 -0.16 -1.08 16 19 C -0.08 -1.11 5.74 -104.62 -0.60 -1.71 16 20 C -0.13 -1.75 9.61 -39.44 -0.38 -2.13 16 21 C -0.12 -1.63 10.05 -39.69 -0.40 -2.03 16 22 C -0.13 -1.90 10.05 -39.68 -0.40 -2.30 16 23 C -0.08 -1.34 8.40 -39.44 -0.33 -1.67 16 24 C -0.06 -0.86 3.54 -104.62 -0.37 -1.23 16 25 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.65 6.47 -51.93 -0.34 0.32 16 28 H 0.34 5.97 8.25 -39.29 -0.32 5.64 16 29 H 0.07 1.45 6.51 -51.93 -0.34 1.11 16 30 H 0.02 0.37 6.42 -51.93 -0.33 0.04 16 31 H 0.34 7.67 9.04 45.56 0.41 8.08 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.07 1.12 6.05 -51.93 -0.31 0.80 16 35 H 0.07 0.71 6.27 -51.93 -0.33 0.38 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 1.24 8.05 -52.48 -0.42 0.82 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.13 2.25 7.61 -52.49 -0.40 1.85 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -30.40 329.04 -9.20 -39.60 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -5.72 Total: 13.39 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.18 Total: -22.41 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.19 Total: -37.23 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.43 Total: -14.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.40 -9.20 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929971846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.933 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds