Wall clock time and date at job start Mon Mar 30 2020 01:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46905 * 109.24951 * 2 1 4 4 C 1.46904 * 110.99683 * 180.85731 * 3 2 1 5 5 C 1.53005 * 109.46736 * 185.74680 * 4 3 2 6 6 H 1.08996 * 109.47079 * 59.99617 * 5 4 3 7 7 O 1.42901 * 109.46890 * 300.00220 * 5 4 3 8 8 C 1.50694 * 109.46779 * 180.02562 * 5 4 3 9 9 H 1.08000 * 120.00445 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99615 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00441 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99805 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47021 * 89.99936 * 12 10 8 14 14 H 1.48497 * 109.47043 * 209.99877 * 12 10 8 15 15 H 1.48497 * 109.47167 * 330.00244 * 12 10 8 16 16 C 1.52730 * 109.22157 * 240.55214 * 2 1 3 17 17 C 1.53326 * 108.39643 * 290.83308 * 16 2 1 18 18 C 1.52732 * 108.38746 * 290.15939 * 17 16 2 19 19 C 1.50629 * 110.65393 * 50.91472 * 18 17 16 20 20 C 1.38918 * 117.76023 * 162.13666 * 19 18 17 21 21 C 1.37928 * 120.54351 * 179.64533 * 20 19 18 22 22 C 1.38263 * 119.77625 * 0.29273 * 21 20 19 23 23 C 1.37937 * 119.76613 * 0.14312 * 22 21 20 24 24 C 1.37661 * 122.55823 * 342.60454 * 19 18 17 25 25 H 1.09000 * 109.46693 * 300.53680 * 1 2 3 26 26 H 1.09006 * 109.46758 * 60.53213 * 1 2 3 27 27 H 1.09002 * 109.47087 * 180.53199 * 1 2 3 28 28 H 1.00897 * 110.99556 * 304.80946 * 3 2 1 29 29 H 1.08999 * 109.47063 * 305.74101 * 4 3 2 30 30 H 1.09000 * 109.46931 * 65.74664 * 4 3 2 31 31 H 0.96707 * 113.99601 * 299.99581 * 7 5 4 32 32 H 0.96997 * 120.00239 * 179.97438 * 11 10 8 33 33 H 1.08994 * 109.67828 * 50.55955 * 16 2 1 34 34 H 1.09005 * 109.67865 * 171.07422 * 16 2 1 35 35 H 1.09002 * 109.67745 * 49.87925 * 17 16 2 36 36 H 1.08992 * 109.67937 * 170.39849 * 17 16 2 37 37 H 1.09006 * 109.25417 * 171.41890 * 18 17 16 38 38 H 1.09004 * 109.25762 * 290.88878 * 18 17 16 39 39 H 1.08004 * 119.72411 * 359.92425 * 20 19 18 40 40 H 1.08002 * 120.11138 * 180.31229 * 21 20 19 41 41 H 1.07991 * 120.11636 * 180.15723 * 22 21 20 42 42 H 1.07998 * 119.72472 * 179.91675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0144 1.3869 0.0000 4 6 3.4826 1.4318 -0.0205 5 6 3.9505 2.8813 0.1245 6 1 3.5877 3.2874 1.0686 7 8 3.4349 3.6587 -0.9580 8 6 5.4566 2.9273 0.1028 9 1 6.0234 2.0142 -0.0033 10 6 6.1110 4.1354 0.2185 11 7 5.4209 5.2475 0.3472 12 14 7.9780 4.1925 0.1923 13 1 8.4488 4.3539 -1.2069 14 1 8.4496 5.3398 1.0087 15 1 8.5198 2.9292 0.7542 16 6 2.0329 -0.7090 -1.2558 17 6 1.7036 -2.2015 -1.1335 18 6 2.5919 -2.8033 -0.0466 19 6 2.5113 -1.9879 1.2173 20 6 2.9390 -2.5811 2.3984 21 6 2.8974 -1.8841 3.5879 22 6 2.4206 -0.5865 3.6071 23 6 1.9871 0.0012 2.4369 24 6 2.0267 -0.6996 1.2381 25 1 -0.3633 0.5222 0.8851 26 1 -0.3633 0.5056 -0.8948 27 1 -0.3633 -1.0276 0.0095 28 1 1.6259 1.9055 -0.7734 29 1 3.8758 0.8387 0.8052 30 1 3.8453 1.0255 -0.9647 31 1 3.7177 3.3536 -1.8310 32 1 5.8814 6.0973 0.4289 33 1 1.5381 -0.2947 -2.1342 34 1 3.1112 -0.5766 -1.3453 35 1 0.6554 -2.3250 -0.8611 36 1 1.8971 -2.6991 -2.0837 37 1 2.2669 -3.8233 0.1593 38 1 3.6249 -2.8185 -0.3941 39 1 3.3114 -3.5948 2.3843 40 1 3.2364 -2.3504 4.5013 41 1 2.3879 -0.0349 4.5349 42 1 1.6135 1.0144 2.4529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929971846.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:51 Heat of formation + Delta-G solvation = -57.553747 kcal Electronic energy + Delta-G solvation = -22118.789591 eV Core-core repulsion = 19061.820104 eV Total energy + Delta-G solvation = -3056.969486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49326 -38.53782 -37.40447 -35.38460 -34.25651 -32.49797 -31.12428 -30.69869 -29.16773 -27.41066 -25.93389 -23.78742 -23.59560 -22.38298 -22.12381 -19.57319 -19.02648 -17.29382 -17.08104 -16.66325 -16.43062 -16.07388 -16.02966 -15.75796 -15.04717 -15.02640 -14.51040 -14.35362 -14.11964 -13.94597 -13.46647 -13.36220 -13.11790 -13.01579 -12.85525 -12.74037 -12.58320 -12.55413 -12.29108 -12.13541 -12.02902 -11.58780 -11.48532 -11.17032 -11.00759 -10.72263 -10.16158 -9.55636 -9.41216 -9.12635 -8.14476 -6.40394 0.52749 0.57683 1.37600 1.38604 1.49474 2.36949 2.91413 3.10934 3.32403 3.68237 3.83998 3.99521 4.10305 4.17543 4.29101 4.29553 4.33690 4.45727 4.47641 4.59714 4.63479 4.67292 4.72422 4.85126 4.88231 5.00055 5.04359 5.07173 5.13321 5.17330 5.22717 5.28036 5.34700 5.50789 5.61629 5.67303 5.69014 5.76695 5.83103 6.04881 6.21492 6.30173 6.63100 6.74804 7.32477 7.55470 8.90011 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.005521 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.179767 B = 5070.477573 C = 5545.914473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.149 3.851 3 N -0.678 5.678 4 C 0.067 3.933 5 C 0.238 3.762 6 H 0.017 0.983 7 O -0.576 6.576 8 C -0.587 4.587 9 H 0.053 0.947 10 C 0.027 3.973 11 N -0.898 5.898 12 Si 0.957 3.043 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.268 1.268 16 C -0.148 4.148 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.089 4.089 20 C -0.134 4.134 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.109 4.109 24 C -0.072 4.072 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.345 0.655 29 H 0.050 0.950 30 H 0.023 0.977 31 H 0.352 0.648 32 H 0.261 0.739 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -17.944 -0.423 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.058 3.942 3 N -0.309 5.309 4 C -0.062 4.062 5 C 0.181 3.819 6 H 0.035 0.965 7 O -0.379 6.379 8 C -0.625 4.625 9 H 0.072 0.928 10 C -0.175 4.175 11 N -0.535 5.535 12 Si 0.782 3.218 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.187 4.187 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.163 4.163 23 C -0.128 4.128 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.197 0.803 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.496 -17.333 0.793 19.319 hybrid contribution 1.598 0.230 -0.969 1.883 sum -6.898 -17.103 -0.177 18.442 Atomic orbital electron populations 1.21834 0.91993 1.02480 1.02318 1.19816 0.95732 0.87121 0.91520 1.60548 1.07487 1.11989 1.50845 1.22278 0.87505 0.98049 0.98407 1.19149 0.90751 0.85945 0.86095 0.96510 1.86521 1.74641 1.60271 1.16464 1.22003 0.93659 0.93269 1.53600 0.92847 1.25877 1.03022 0.95277 0.93355 1.70216 1.37105 0.98372 1.47810 0.85597 0.79927 0.77832 0.78464 1.19514 1.20699 1.19225 1.22299 1.00941 0.97614 0.97886 1.21546 1.00315 0.93894 0.99042 1.20524 1.00649 0.98790 0.91609 1.19948 0.98565 0.93934 0.96459 1.21397 1.00883 1.00951 0.91970 1.21327 0.99508 0.94475 0.98995 1.21322 1.00407 0.96282 0.98310 1.21259 0.99256 0.99461 0.92779 1.19532 0.99531 0.93702 0.94531 0.92944 0.91501 0.90630 0.83619 0.93159 0.95943 0.80323 0.92966 0.90827 0.93148 0.90515 0.89884 0.88677 0.91142 0.84002 0.84056 0.85545 0.87286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.41 71.98 0.61 -2.51 16 2 C 0.15 4.28 0.51 2.67 0.00 4.28 16 3 N -0.68 -24.30 5.19 -474.42 -2.46 -26.76 16 4 C 0.07 2.85 4.45 86.30 0.38 3.23 16 5 C 0.24 12.60 3.10 29.85 0.09 12.69 16 6 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 7 O -0.58 -30.01 12.18 -148.98 -1.81 -31.83 16 8 C -0.59 -33.31 8.76 25.60 0.22 -33.08 16 9 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 10 C 0.03 1.56 5.40 84.66 0.46 2.02 16 11 N -0.90 -54.87 12.84 21.45 0.28 -54.59 16 12 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 C -0.15 -3.73 4.65 30.61 0.14 -3.59 16 17 C -0.11 -2.12 5.93 30.61 0.18 -1.94 16 18 C -0.08 -1.61 5.67 29.74 0.17 -1.44 16 19 C -0.09 -2.34 5.74 -19.86 -0.11 -2.45 16 20 C -0.13 -3.23 9.61 22.36 0.21 -3.02 16 21 C -0.13 -3.13 10.05 22.20 0.22 -2.91 16 22 C -0.15 -4.24 10.05 22.20 0.22 -4.02 16 23 C -0.11 -3.62 8.40 22.36 0.19 -3.43 16 24 C -0.07 -2.21 3.54 -19.86 -0.07 -2.28 16 25 H 0.05 1.38 8.07 -2.39 -0.02 1.36 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.07 1.55 6.47 -2.39 -0.02 1.54 16 28 H 0.34 12.16 8.25 -89.70 -0.74 11.42 16 29 H 0.05 2.29 6.51 -2.39 -0.02 2.27 16 30 H 0.02 0.93 6.42 -2.39 -0.02 0.92 16 31 H 0.35 16.14 9.04 -74.05 -0.67 15.47 16 32 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.05 1.50 6.05 -2.38 -0.01 1.48 16 35 H 0.08 1.35 6.27 -2.39 -0.01 1.33 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.47 8.13 -2.38 -0.02 1.45 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.14 2.56 8.05 -2.91 -0.02 2.54 16 40 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 41 H 0.13 3.30 8.06 -2.92 -0.02 3.28 16 42 H 0.11 4.01 7.61 -2.91 -0.02 3.99 16 Total: -1.00 -66.69 329.04 0.56 -66.12 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.39 Total: 39.20 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 2.92 Total: -38.45 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -2.19 Total: -81.36 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.81 Total: -31.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.69 0.56 -66.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929971846.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.571 kcal (2) G-P(sol) polarization free energy of solvation -66.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds