Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.29707 * 2 1 4 4 C 1.50621 * 109.29852 * 119.58529 * 2 1 3 5 5 C 1.38734 * 118.42278 * 282.96505 * 4 2 1 6 6 C 1.38007 * 120.37964 * 179.60781 * 5 4 2 7 7 C 1.38264 * 119.86563 * 0.02562 * 6 5 4 8 8 C 1.38026 * 119.83133 * 0.07791 * 7 6 5 9 9 C 1.37828 * 121.85019 * 102.72171 * 4 2 1 10 10 C 1.50718 * 121.65869 * 0.49986 * 9 4 2 11 11 C 1.52890 * 109.88332 * 343.13003 * 10 9 4 12 12 N 1.46632 * 109.30086 * 240.62195 * 2 1 3 13 13 C 1.46901 * 110.99931 * 168.81842 * 12 2 1 14 14 C 1.53000 * 109.46946 * 187.56368 * 13 12 2 15 15 H 1.08993 * 109.47517 * 52.74201 * 14 13 12 16 16 O 1.42899 * 109.47369 * 292.73624 * 14 13 12 17 17 C 1.50704 * 109.46683 * 172.74062 * 14 13 12 18 18 H 1.07998 * 120.00558 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99604 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99989 * 359.97438 * 19 17 14 21 21 Si 1.86803 * 119.99755 * 179.97438 * 19 17 14 22 22 H 1.48495 * 109.47163 * 90.00052 * 21 19 17 23 23 H 1.48500 * 109.46828 * 210.00116 * 21 19 17 24 24 H 1.48503 * 109.46996 * 329.99999 * 21 19 17 25 25 H 1.08999 * 109.47390 * 300.41874 * 1 2 3 26 26 H 1.09007 * 109.47030 * 60.42100 * 1 2 3 27 27 H 1.08998 * 109.47298 * 180.41360 * 1 2 3 28 28 H 1.09001 * 109.47005 * 179.58007 * 3 2 1 29 29 H 1.08999 * 109.47425 * 299.58398 * 3 2 1 30 30 H 1.09006 * 109.47120 * 59.58095 * 3 2 1 31 31 H 1.08007 * 119.81098 * 359.58297 * 5 4 2 32 32 H 1.07999 * 120.06862 * 180.02562 * 6 5 4 33 33 H 1.07999 * 120.08484 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.82845 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.39168 * 103.23781 * 10 9 4 36 36 H 1.09008 * 109.38334 * 223.03082 * 10 9 4 37 37 H 1.08997 * 109.62763 * 170.03457 * 11 10 9 38 38 H 1.08998 * 109.63111 * 290.62481 * 11 10 9 39 39 H 1.08999 * 109.47327 * 307.56877 * 13 12 2 40 40 H 1.09005 * 109.46996 * 67.56562 * 13 12 2 41 41 H 0.96697 * 114.00192 * 291.42967 * 16 14 13 42 42 H 0.96998 * 119.99638 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0356 1.4440 0.0000 4 6 2.0278 -0.7019 1.2362 5 6 1.9877 -0.0202 2.4439 6 6 2.4260 -0.6276 3.6030 7 6 2.9087 -1.9226 3.5617 8 6 2.9513 -2.6015 2.3607 9 6 2.5115 -1.9918 1.1953 10 6 2.5800 -2.7704 -0.0934 11 6 1.6902 -2.1109 -1.1473 12 7 2.0147 -0.6789 -1.2059 13 6 3.4585 -0.4727 -1.3818 14 6 3.8917 -1.0310 -2.7389 15 1 3.2625 -0.6097 -3.5228 16 8 3.7576 -2.4537 -2.7335 17 6 5.3301 -0.6631 -2.9972 18 1 5.8801 -0.0882 -2.2669 19 6 5.9437 -1.0596 -4.1667 20 7 5.2738 -1.7592 -5.0563 21 14 7.7265 -0.6029 -4.4873 22 1 8.6138 -1.6669 -3.9528 23 1 7.9463 -0.4631 -5.9493 24 1 8.0364 0.6843 -3.8147 25 1 -0.3634 0.5203 0.8862 26 1 -0.3633 0.5073 -0.8938 27 1 -0.3634 -1.0276 0.0074 28 1 3.1256 1.4473 0.0075 29 1 1.6769 1.9546 -0.8937 30 1 1.6646 1.9589 0.8862 31 1 1.6116 0.9917 2.4771 32 1 2.3922 -0.0925 4.5405 33 1 3.2522 -2.4015 4.4667 34 1 3.3287 -3.6129 2.3284 35 1 3.6098 -2.7900 -0.4501 36 1 2.2383 -3.7906 0.0817 37 1 1.8758 -2.5662 -2.1201 38 1 0.6428 -2.2383 -0.8740 39 1 3.6811 0.5935 -1.3397 40 1 3.9985 -0.9883 -0.5876 41 1 4.3844 -2.9057 -2.1522 42 1 5.7054 -2.0377 -5.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930182948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = -15.658312 kcal Electronic energy + Delta-G solvation = -22626.155191 eV Core-core repulsion = 19571.002427 eV Total energy + Delta-G solvation = -3055.152764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68373 -37.48469 -35.49961 -33.71322 -32.07618 -31.23481 -29.75393 -29.10277 -27.07934 -26.85450 -24.44517 -22.99807 -22.54811 -20.99305 -20.32463 -18.03433 -16.99432 -16.52513 -15.75385 -15.18591 -14.81282 -14.59952 -14.29767 -14.24763 -13.93968 -13.56729 -13.11022 -13.00308 -12.47000 -12.25297 -12.08450 -12.00824 -11.79958 -11.53903 -11.46655 -11.24315 -11.17208 -11.02831 -10.90790 -10.78193 -10.38045 -10.22370 -9.99288 -9.91203 -8.89723 -8.62171 -8.56482 -8.37581 -8.09311 -7.53374 -6.00808 -4.18366 1.52353 1.53955 3.27272 3.34785 3.37615 3.90466 4.34147 4.53360 4.89872 4.96899 5.07981 5.13832 5.24067 5.27233 5.38587 5.47011 5.62360 5.69687 5.79091 5.86233 5.89326 5.95333 6.04794 6.10127 6.12403 6.24419 6.26869 6.31586 6.39675 6.45187 6.48365 6.59589 6.64000 6.67761 6.83347 6.91483 7.11093 7.20838 7.62972 7.77867 7.81044 8.01882 8.21734 8.86761 9.38863 9.58229 11.03042 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022366 B = 0.005557 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.590193 B = 5037.148876 C = 5235.844364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.138 3.862 3 C -0.142 4.142 4 C -0.093 4.093 5 C -0.115 4.115 6 C -0.132 4.132 7 C -0.126 4.126 8 C -0.123 4.123 9 C -0.066 4.066 10 C -0.117 4.117 11 C 0.049 3.951 12 N -0.511 5.511 13 C 0.023 3.977 14 C 0.236 3.764 15 H 0.062 0.938 16 O -0.561 6.561 17 C -0.571 4.571 18 H 0.054 0.946 19 C 0.080 3.920 20 N -0.858 5.858 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.028 0.972 41 H 0.342 0.658 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 1.106 14.117 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 C -0.199 4.199 4 C -0.095 4.095 5 C -0.133 4.133 6 C -0.150 4.150 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.079 4.079 12 N -0.232 5.232 13 C -0.104 4.104 14 C 0.179 3.821 15 H 0.080 0.920 16 O -0.365 6.365 17 C -0.610 4.610 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.494 5.494 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.186 0.814 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.252 1.387 13.057 15.508 hybrid contribution 2.063 -0.189 1.143 2.367 sum -6.189 1.198 14.201 15.537 Atomic orbital electron populations 1.21841 0.93467 1.01855 1.01538 1.19995 0.95083 0.93896 0.86335 1.22045 1.01809 0.94354 1.01689 1.20395 0.98816 0.94181 0.96118 1.21128 1.00312 0.99677 0.92198 1.21002 1.00607 0.95453 0.97975 1.21007 1.00646 0.95133 0.97593 1.21103 1.00696 0.99972 0.92376 1.19813 0.97338 0.93952 0.95564 1.21208 1.03338 0.98368 0.92635 1.22455 0.96925 0.87929 1.00586 1.62771 1.16880 1.10763 1.32834 1.23211 0.85175 1.01215 1.00807 1.19335 0.94707 0.78365 0.89725 0.92016 1.86502 1.58879 1.21535 1.69603 1.21630 0.97704 1.37250 1.04373 0.92813 1.25016 0.97701 0.94182 0.95723 1.70079 1.36058 1.34938 1.08311 0.86700 0.85447 0.78946 0.77447 1.20626 1.21112 1.19879 0.92912 0.91520 0.92659 0.91856 0.91400 0.92727 0.86303 0.86647 0.86627 0.86458 0.89223 0.91172 0.86648 0.92401 0.91008 0.95396 0.81374 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.33 37.16 0.31 -1.43 16 2 C 0.14 2.11 0.54 -132.94 -0.07 2.04 16 3 C -0.14 -2.04 7.35 37.16 0.27 -1.77 16 4 C -0.09 -1.42 4.32 -104.63 -0.45 -1.87 16 5 C -0.11 -1.55 8.97 -39.48 -0.35 -1.90 16 6 C -0.13 -1.65 10.05 -39.66 -0.40 -2.05 16 7 C -0.13 -1.59 10.05 -39.65 -0.40 -1.99 16 8 C -0.12 -1.73 9.66 -39.49 -0.38 -2.11 16 9 C -0.07 -1.04 5.09 -104.60 -0.53 -1.57 16 10 C -0.12 -1.87 4.93 -27.93 -0.14 -2.01 16 11 C 0.05 0.84 5.25 -3.86 -0.02 0.82 16 12 N -0.51 -9.24 4.62 -220.59 -1.02 -10.26 16 13 C 0.02 0.48 3.71 -3.82 -0.01 0.46 16 14 C 0.24 5.82 2.92 -27.88 -0.08 5.74 16 15 H 0.06 1.73 8.14 -51.93 -0.42 1.31 16 16 O -0.56 -13.46 9.03 -35.23 -0.32 -13.78 16 17 C -0.57 -15.41 8.68 -34.44 -0.30 -15.71 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 20 N -0.86 -24.92 12.84 55.43 0.71 -24.21 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 28 H 0.06 1.00 6.17 -51.93 -0.32 0.68 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.65 6.48 -51.93 -0.34 0.32 16 31 H 0.12 1.39 6.43 -52.48 -0.34 1.05 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.09 1.57 4.70 -51.93 -0.24 1.33 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.12 2.27 5.80 -51.93 -0.30 1.97 16 38 H 0.06 0.92 6.06 -51.93 -0.31 0.61 16 39 H 0.07 1.50 5.69 -51.93 -0.30 1.20 16 40 H 0.03 0.58 5.39 -51.93 -0.28 0.30 16 41 H 0.34 7.63 7.49 45.56 0.34 7.97 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -29.03 314.06 -8.91 -37.94 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.34 Total: 10.81 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -2.65 Total: -21.24 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.31 Total: -34.47 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.32 Total: -13.78 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.03 -8.91 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930182948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.279 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds