Wall clock time and date at job start Mon Mar 30 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 120.00217 * 2 1 4 4 N 1.46903 * 109.46901 * 124.95643 * 3 2 1 5 5 C 1.46901 * 110.99856 * 190.94562 * 4 3 2 6 6 C 1.50707 * 109.46725 * 70.94079 * 5 4 3 7 7 H 1.08003 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99861 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00067 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00037 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47051 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47069 * 119.99517 * 10 8 6 13 13 H 1.48499 * 109.47082 * 239.99610 * 10 8 6 14 14 C 1.46901 * 110.99714 * 66.99898 * 4 3 2 15 15 C 1.53005 * 109.46514 * 201.21523 * 14 4 3 16 16 H 1.08993 * 109.47308 * 53.65322 * 15 14 4 17 17 O 1.42898 * 109.46964 * 293.64971 * 15 14 4 18 18 C 1.50706 * 109.46705 * 173.65592 * 15 14 4 19 19 C 1.38255 * 119.99914 * 84.99953 * 18 15 14 20 20 C 1.38221 * 119.99641 * 179.97438 * 19 18 15 21 21 C 1.38251 * 120.00100 * 0.09055 * 20 19 18 22 22 C 1.38210 * 120.00092 * 359.86100 * 21 20 19 23 23 C 1.50703 * 120.00213 * 180.02562 * 22 21 20 24 24 C 1.38214 * 119.99827 * 264.97552 * 18 15 14 25 25 H 1.07994 * 119.99727 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99643 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99643 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46990 * 4.95763 * 3 2 1 29 29 H 1.09000 * 109.47337 * 244.96126 * 3 2 1 30 30 H 1.08994 * 109.47312 * 190.93618 * 5 4 3 31 31 H 1.09002 * 109.47157 * 310.94456 * 5 4 3 32 32 H 0.97001 * 119.99945 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47267 * 81.21306 * 14 4 3 34 34 H 1.08999 * 109.46923 * 321.20988 * 14 4 3 35 35 H 0.96695 * 114.00523 * 300.00531 * 17 15 14 36 36 H 1.07994 * 120.00191 * 359.69248 * 19 18 15 37 37 H 1.08001 * 119.99577 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.99803 * 179.97438 * 21 20 19 39 39 H 1.08989 * 109.47340 * 270.03062 * 23 22 21 40 40 H 1.09007 * 109.46463 * 30.02596 * 23 22 21 41 41 H 1.08999 * 109.46786 * 150.02338 * 23 22 21 42 42 H 1.07997 * 120.00108 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9957 1.3323 1.1352 5 6 3.5569 2.6768 1.3233 6 6 2.4876 3.5980 1.8516 7 1 1.4907 3.2225 2.0293 8 6 2.7817 4.9206 2.1070 9 7 3.9956 5.3781 1.8901 10 14 1.4562 6.0628 2.7610 11 1 0.1863 5.3090 2.9173 12 1 1.8758 6.6050 4.0783 13 1 1.2525 7.1824 1.8070 14 6 4.0616 0.3360 0.9650 15 6 4.6792 0.0123 2.3269 16 1 3.8925 -0.2801 3.0223 17 8 5.3549 1.1666 2.8300 18 6 5.6627 -1.1196 2.1762 19 6 6.9658 -0.8571 1.7961 20 6 7.8679 -1.8952 1.6584 21 6 7.4667 -3.1962 1.8990 22 6 6.1643 -3.4585 2.2800 23 6 5.7271 -4.8765 2.5428 24 6 5.2621 -2.4201 2.4185 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0888 29 1 2.6220 1.4023 -0.9311 30 1 4.3807 2.6302 2.0356 31 1 3.9229 3.0546 0.3686 32 1 4.2025 6.3085 2.0701 33 1 4.8301 0.7354 0.3032 34 1 3.6441 -0.5722 0.5303 35 1 6.0694 1.4833 2.2607 36 1 7.2776 0.1585 1.6023 37 1 8.8859 -1.6901 1.3618 38 1 8.1715 -4.0073 1.7910 39 1 5.3537 -5.3187 1.6193 40 1 6.5753 -5.4567 2.9064 41 1 4.9364 -4.8798 3.2930 42 1 4.2444 -2.6250 2.7163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930540732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:11 Heat of formation + Delta-G solvation = -3.852265 kcal Electronic energy + Delta-G solvation = -21182.230365 eV Core-core repulsion = 18127.589549 eV Total energy + Delta-G solvation = -3054.640815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.72888 -37.68974 -35.79601 -33.08286 -32.66824 -32.19510 -31.45122 -28.28171 -26.93696 -26.68499 -24.52448 -22.94570 -22.07829 -20.64473 -20.18746 -19.11387 -17.06921 -16.33289 -15.75335 -15.71958 -15.45748 -14.72094 -14.49265 -14.06154 -13.94480 -13.87401 -13.49580 -13.29621 -13.06256 -12.38028 -12.32788 -12.17450 -12.06289 -11.79626 -11.47675 -11.25688 -11.11850 -11.05250 -10.78303 -10.71356 -10.57373 -10.25740 -9.88428 -9.46350 -9.09369 -8.84164 -8.73105 -8.55033 -8.27394 -7.19485 -5.93468 -3.91864 1.35471 1.40102 2.70278 3.36216 3.43640 3.48623 3.74327 4.48884 4.63165 4.77163 4.85088 4.94695 5.10443 5.19369 5.27874 5.39479 5.42692 5.45929 5.49394 5.57658 5.60398 5.67834 5.72065 5.74338 6.00538 6.03971 6.05506 6.16518 6.23995 6.34008 6.48189 6.54475 6.56164 6.75493 7.00749 7.02299 7.25063 7.37998 7.46349 7.90297 8.12217 8.25283 8.28392 8.63799 9.14792 9.70385 11.17654 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.004614 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.945264 B = 6067.455118 C = 7072.739276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.524 5.524 5 C 0.174 3.826 6 C -0.499 4.499 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.287 1.287 14 C 0.029 3.971 15 C 0.154 3.846 16 H 0.111 0.889 17 O -0.534 6.534 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.112 4.112 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.026 0.974 30 H 0.069 0.931 31 H -0.017 1.017 32 H 0.258 0.742 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.367 0.633 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -17.572 -2.319 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.153 4.153 3 C -0.045 4.045 4 N -0.249 5.249 5 C 0.050 3.950 6 C -0.538 4.538 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.213 1.213 14 C -0.100 4.100 15 C 0.094 3.906 16 H 0.129 0.871 17 O -0.339 6.339 18 C -0.101 4.101 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.147 4.147 22 C -0.089 4.089 23 C -0.170 4.170 24 C -0.130 4.130 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.001 0.999 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.215 0.785 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.949 -17.577 -1.395 18.069 hybrid contribution 0.251 0.937 -0.908 1.328 sum 4.201 -16.640 -2.303 17.316 Atomic orbital electron populations 1.23704 0.95945 1.01222 1.02940 1.23034 0.95944 0.98477 0.97832 1.21198 0.96114 0.95196 0.91973 1.62163 1.15541 1.08523 1.38627 1.20221 0.96992 0.81732 0.96091 1.21190 0.97005 0.93415 1.42152 0.92162 1.24935 0.95448 0.98140 0.96063 1.69959 1.19112 1.15206 1.49703 0.86515 0.82118 0.80680 0.78532 1.19774 1.21082 1.21313 1.22686 0.94777 0.97103 0.95411 1.20844 0.91278 0.82288 0.96177 0.87137 1.86776 1.51516 1.44634 1.50946 1.20812 0.95552 0.95720 0.97980 1.20937 0.93250 0.99326 1.00035 1.21076 0.99375 0.92754 1.00046 1.20971 0.95638 0.96683 1.01394 1.19887 0.93917 0.95625 0.99460 1.20777 1.01672 0.92615 1.01895 1.20889 0.99449 0.91695 1.00947 0.89280 0.88576 0.88406 0.89276 0.95588 0.91309 0.99925 0.93215 0.95342 0.91382 0.78496 0.86115 0.86187 0.86457 0.91315 0.91756 0.91518 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 14.32 29.01 0.42 -2.54 16 2 C -0.13 -2.17 9.18 -36.03 -0.33 -2.50 16 3 C 0.08 1.62 5.25 -4.97 -0.03 1.59 16 4 N -0.52 -11.17 4.36 -237.51 -1.04 -12.20 16 5 C 0.17 4.48 4.52 -4.97 -0.02 4.46 16 6 C -0.50 -14.18 8.42 -34.44 -0.29 -14.47 16 7 H 0.06 1.72 7.52 -52.48 -0.39 1.33 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 10 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.03 0.52 4.64 -3.82 -0.02 0.50 16 15 C 0.15 2.57 3.43 -27.88 -0.10 2.48 16 16 H 0.11 1.95 8.05 -51.93 -0.42 1.53 16 17 O -0.53 -10.17 10.37 -35.23 -0.37 -10.54 16 18 C -0.10 -1.41 5.00 -104.62 -0.52 -1.94 16 19 C -0.12 -1.54 9.33 -39.58 -0.37 -1.91 16 20 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.13 -1.41 9.70 -39.59 -0.38 -1.79 16 22 C -0.09 -1.01 5.88 -104.62 -0.62 -1.62 16 23 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 24 C -0.11 -1.43 9.34 -39.58 -0.37 -1.80 16 25 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 26 H 0.10 1.45 7.84 -52.49 -0.41 1.04 16 27 H 0.10 1.43 6.79 -52.49 -0.36 1.07 16 28 H 0.09 1.92 6.66 -51.93 -0.35 1.57 16 29 H 0.03 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.07 1.85 4.91 -51.93 -0.26 1.59 16 31 H -0.02 -0.47 8.07 -51.93 -0.42 -0.89 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.03 0.51 7.98 -51.93 -0.41 0.09 16 34 H 0.07 1.07 6.18 -51.93 -0.32 0.75 16 35 H 0.37 6.05 7.22 45.56 0.33 6.38 16 36 H 0.12 1.47 6.62 -52.49 -0.35 1.13 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.07 0.52 8.14 -51.94 -0.42 0.10 16 40 H 0.06 0.46 8.09 -51.92 -0.42 0.04 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.46 344.21 -9.13 -40.59 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.86 Total: 6.42 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.76 Total: -20.37 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.30 Total: -38.33 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.37 Total: -10.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.46 -9.13 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.736 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds