Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 120.00217 * 2 1 4 4 N 1.46903 * 109.46901 * 124.95643 * 3 2 1 5 5 C 1.46901 * 110.99856 * 190.94562 * 4 3 2 6 6 C 1.50707 * 109.46725 * 70.94079 * 5 4 3 7 7 H 1.08003 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99861 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00067 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00037 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47051 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47069 * 119.99517 * 10 8 6 13 13 H 1.48499 * 109.47082 * 239.99610 * 10 8 6 14 14 C 1.46901 * 110.99714 * 66.99898 * 4 3 2 15 15 C 1.53005 * 109.46514 * 201.21523 * 14 4 3 16 16 H 1.08993 * 109.47308 * 53.65322 * 15 14 4 17 17 O 1.42898 * 109.46964 * 293.64971 * 15 14 4 18 18 C 1.50706 * 109.46705 * 173.65592 * 15 14 4 19 19 C 1.38255 * 119.99914 * 84.99953 * 18 15 14 20 20 C 1.38221 * 119.99641 * 179.97438 * 19 18 15 21 21 C 1.38251 * 120.00100 * 0.09055 * 20 19 18 22 22 C 1.38210 * 120.00092 * 359.86100 * 21 20 19 23 23 C 1.50703 * 120.00213 * 180.02562 * 22 21 20 24 24 C 1.38214 * 119.99827 * 264.97552 * 18 15 14 25 25 H 1.07994 * 119.99727 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99643 * 359.97438 * 1 2 3 27 27 H 1.07999 * 119.99643 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46990 * 4.95763 * 3 2 1 29 29 H 1.09000 * 109.47337 * 244.96126 * 3 2 1 30 30 H 1.08994 * 109.47312 * 190.93618 * 5 4 3 31 31 H 1.09002 * 109.47157 * 310.94456 * 5 4 3 32 32 H 0.97001 * 119.99945 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47267 * 81.21306 * 14 4 3 34 34 H 1.08999 * 109.46923 * 321.20988 * 14 4 3 35 35 H 0.96695 * 114.00523 * 300.00531 * 17 15 14 36 36 H 1.07994 * 120.00191 * 359.69248 * 19 18 15 37 37 H 1.08001 * 119.99577 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.99803 * 179.97438 * 21 20 19 39 39 H 1.08989 * 109.47340 * 270.03062 * 23 22 21 40 40 H 1.09007 * 109.46463 * 30.02596 * 23 22 21 41 41 H 1.08999 * 109.46786 * 150.02338 * 23 22 21 42 42 H 1.07997 * 120.00108 * 359.97438 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9957 1.3323 1.1352 5 6 3.5569 2.6768 1.3233 6 6 2.4876 3.5980 1.8516 7 1 1.4907 3.2225 2.0293 8 6 2.7817 4.9206 2.1070 9 7 3.9956 5.3781 1.8901 10 14 1.4562 6.0628 2.7610 11 1 0.1863 5.3090 2.9173 12 1 1.8758 6.6050 4.0783 13 1 1.2525 7.1824 1.8070 14 6 4.0616 0.3360 0.9650 15 6 4.6792 0.0123 2.3269 16 1 3.8925 -0.2801 3.0223 17 8 5.3549 1.1666 2.8300 18 6 5.6627 -1.1196 2.1762 19 6 6.9658 -0.8571 1.7961 20 6 7.8679 -1.8952 1.6584 21 6 7.4667 -3.1962 1.8990 22 6 6.1643 -3.4585 2.2800 23 6 5.7271 -4.8765 2.5428 24 6 5.2621 -2.4201 2.4185 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0888 29 1 2.6220 1.4023 -0.9311 30 1 4.3807 2.6302 2.0356 31 1 3.9229 3.0546 0.3686 32 1 4.2025 6.3085 2.0701 33 1 4.8301 0.7354 0.3032 34 1 3.6441 -0.5722 0.5303 35 1 6.0694 1.4833 2.2607 36 1 7.2776 0.1585 1.6023 37 1 8.8859 -1.6901 1.3618 38 1 8.1715 -4.0073 1.7910 39 1 5.3537 -5.3187 1.6193 40 1 6.5753 -5.4567 2.9064 41 1 4.9364 -4.8798 3.2930 42 1 4.2444 -2.6250 2.7163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930540732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -23.602703 kcal Electronic energy + Delta-G solvation = -21183.086808 eV Core-core repulsion = 18127.589549 eV Total energy + Delta-G solvation = -3055.497259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80401 -39.09196 -37.25155 -34.95334 -33.84427 -33.57029 -32.59766 -29.88443 -28.40603 -27.70597 -26.13349 -24.52630 -23.03856 -22.34261 -21.29354 -20.46789 -18.52413 -18.14936 -17.08720 -17.00562 -16.71482 -16.47052 -15.59579 -15.52076 -15.50346 -14.83921 -14.74498 -14.51051 -14.10912 -13.99832 -13.90508 -13.29402 -13.14506 -13.08175 -12.89077 -12.84592 -12.61472 -12.46021 -12.36236 -12.18258 -12.00532 -11.87601 -11.59923 -11.22433 -10.79140 -10.40533 -10.23683 -9.71365 -9.49948 -8.94562 -8.14402 -6.20818 0.40428 0.48083 1.39399 1.40885 1.44844 1.53643 2.43007 2.79365 3.18142 3.29941 3.56516 3.84625 3.92852 4.04576 4.10520 4.20498 4.25292 4.28726 4.34488 4.52877 4.53934 4.56266 4.68114 4.78492 4.87479 4.90902 4.93750 5.03218 5.06981 5.15777 5.27221 5.32857 5.52270 5.56656 5.67188 5.69732 5.71443 5.74259 5.99053 6.12359 6.17778 6.43127 6.67310 6.77582 6.93907 7.46095 8.96489 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019148 B = 0.004614 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.945264 B = 6067.455118 C = 7072.739276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.150 4.150 3 C 0.084 3.916 4 N -0.532 5.532 5 C 0.189 3.811 6 C -0.516 4.516 7 H 0.053 0.947 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.036 3.964 15 C 0.160 3.840 16 H 0.098 0.902 17 O -0.559 6.559 18 C -0.115 4.115 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.091 4.091 23 C -0.111 4.111 24 C -0.123 4.123 25 H 0.123 0.877 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.057 0.943 31 H -0.050 1.050 32 H 0.261 0.739 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.374 0.626 36 H 0.119 0.881 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 -19.921 -2.232 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.044 4.044 4 N -0.256 5.256 5 C 0.063 3.937 6 C -0.555 4.555 7 H 0.071 0.929 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.204 1.204 14 C -0.093 4.093 15 C 0.101 3.899 16 H 0.116 0.884 17 O -0.366 6.366 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.141 4.141 25 H 0.141 0.859 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.074 0.926 31 H -0.032 1.032 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.109 0.891 35 H 0.223 0.777 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.530 -19.949 -1.318 20.301 hybrid contribution 0.396 1.593 -0.963 1.903 sum 3.926 -18.355 -2.281 18.908 Atomic orbital electron populations 1.23943 0.95468 1.02434 1.00107 1.22888 0.96375 0.97209 1.00327 1.21149 0.95476 0.96605 0.91149 1.62082 1.16705 1.06863 1.39936 1.19886 0.96123 0.83868 0.93827 1.21486 0.97228 0.94415 1.42325 0.92896 1.25790 0.97708 0.99756 0.96244 1.70076 1.20966 1.15719 1.50515 0.85457 0.79384 0.78530 0.77979 1.19110 1.20534 1.20425 1.22729 0.93667 0.96661 0.96243 1.20735 0.91601 0.82595 0.94974 0.88401 1.86707 1.52080 1.45999 1.51803 1.20545 0.95430 0.95341 1.00247 1.21063 0.93377 1.00021 1.00802 1.21371 1.00088 0.92669 0.99407 1.21370 0.96048 0.97174 0.99980 1.20254 0.93825 0.96697 0.98364 1.20832 1.02488 0.90823 1.02650 1.21055 1.00338 0.91482 1.01214 0.85937 0.89413 0.86272 0.92093 0.95976 0.92568 1.03196 0.92975 0.95964 0.89057 0.77727 0.86314 0.84007 0.83635 0.90193 0.90190 0.91129 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.99 14.32 67.78 0.97 -4.02 16 2 C -0.15 -4.65 9.18 25.64 0.24 -4.42 16 3 C 0.08 3.35 5.25 85.56 0.45 3.80 16 4 N -0.53 -23.42 4.36 -905.34 -3.95 -27.37 16 5 C 0.19 10.21 4.52 85.56 0.39 10.59 16 6 C -0.52 -30.32 8.42 25.60 0.22 -30.10 16 7 H 0.05 3.11 7.52 -2.91 -0.02 3.09 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 10 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 13 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 14 C 0.04 1.27 4.64 86.30 0.40 1.67 16 15 C 0.16 5.51 3.43 29.85 0.10 5.61 16 16 H 0.10 3.55 8.05 -2.39 -0.02 3.53 16 17 O -0.56 -22.42 10.37 -148.98 -1.54 -23.97 16 18 C -0.11 -3.25 5.00 -19.86 -0.10 -3.35 16 19 C -0.13 -3.51 9.33 22.27 0.21 -3.30 16 20 C -0.12 -2.50 10.05 22.27 0.22 -2.27 16 21 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 22 C -0.09 -1.84 5.88 -19.87 -0.12 -1.96 16 23 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 24 C -0.12 -2.99 9.34 22.27 0.21 -2.78 16 25 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 26 H 0.09 2.55 7.84 -2.91 -0.02 2.53 16 27 H 0.12 3.20 6.79 -2.91 -0.02 3.18 16 28 H 0.06 2.74 6.66 -2.39 -0.02 2.72 16 29 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 30 H 0.06 3.19 4.91 -2.39 -0.01 3.17 16 31 H -0.05 -2.94 8.07 -2.39 -0.02 -2.96 16 32 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.02 0.82 7.98 -2.39 -0.02 0.80 16 34 H 0.09 2.82 6.18 -2.39 -0.01 2.80 16 35 H 0.37 13.25 7.22 -74.06 -0.53 12.72 16 36 H 0.12 3.01 6.62 -2.91 -0.02 2.99 16 37 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.85 8.09 -2.38 -0.02 0.83 16 41 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 42 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -69.18 344.21 1.85 -67.33 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.46 Total: 25.81 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 4.58 Total: -32.94 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -3.66 Total: -84.20 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.54 Total: -23.97 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -69.18 1.85 -67.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.727 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds