Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00319 * 2 1 4 4 N 1.46905 * 109.47219 * 125.35678 * 3 2 1 5 5 C 1.46898 * 110.99787 * 164.34580 * 4 3 2 6 6 C 1.50703 * 109.47374 * 295.44838 * 5 4 3 7 7 H 1.07999 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99486 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46716 * 90.00380 * 10 8 6 12 12 H 1.48495 * 109.47288 * 210.00112 * 10 8 6 13 13 H 1.48495 * 109.46932 * 330.00408 * 10 8 6 14 14 C 1.46897 * 111.00271 * 288.30707 * 4 3 2 15 15 C 1.53002 * 109.47061 * 162.16071 * 14 4 3 16 16 H 1.09002 * 109.46662 * 307.02939 * 15 14 4 17 17 O 1.42893 * 109.47396 * 67.03387 * 15 14 4 18 18 C 1.50695 * 109.47070 * 187.03508 * 15 14 4 19 19 C 1.38258 * 120.00290 * 279.72437 * 18 15 14 20 20 C 1.38205 * 120.00367 * 179.76779 * 19 18 15 21 21 C 1.38254 * 119.99959 * 0.50198 * 20 19 18 22 22 C 1.38213 * 119.99924 * 359.75134 * 21 20 19 23 23 C 1.50705 * 120.00049 * 179.97438 * 22 21 20 24 24 C 1.38218 * 120.00076 * 99.99497 * 18 15 14 25 25 H 1.08006 * 119.99988 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00321 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99901 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46800 * 5.36819 * 3 2 1 29 29 H 1.08991 * 109.47509 * 245.36131 * 3 2 1 30 30 H 1.08995 * 109.46997 * 55.45038 * 5 4 3 31 31 H 1.09007 * 109.47196 * 175.44776 * 5 4 3 32 32 H 0.97002 * 119.99469 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46829 * 282.15530 * 14 4 3 34 34 H 1.08994 * 109.47207 * 42.15671 * 14 4 3 35 35 H 0.96701 * 114.00465 * 59.99564 * 17 15 14 36 36 H 1.08007 * 119.99722 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00146 * 180.22956 * 20 19 18 38 38 H 1.07999 * 120.00326 * 179.72433 * 21 20 19 39 39 H 1.09001 * 109.46970 * 270.02283 * 23 22 21 40 40 H 1.09003 * 109.47143 * 30.01897 * 23 22 21 41 41 H 1.08997 * 109.46936 * 150.01876 * 23 22 21 42 42 H 1.08002 * 119.99812 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0024 1.3283 1.1296 5 6 4.0022 2.3913 0.9612 6 6 4.8528 2.0943 -0.2469 7 1 4.6688 1.2049 -0.8314 8 6 5.8659 2.9578 -0.6060 9 7 6.0903 4.0405 0.1062 10 14 6.9207 2.5892 -2.1029 11 1 6.3057 3.2059 -3.3057 12 1 8.2809 3.1494 -1.9001 13 1 7.0139 1.1194 -2.2930 14 6 2.2883 1.4744 2.4049 15 6 3.2071 1.0564 3.5547 16 1 3.6043 0.0605 3.3586 17 8 4.2862 1.9867 3.6645 18 6 2.4247 1.0404 4.8425 19 6 2.1821 2.2217 5.5188 20 6 1.4604 2.2077 6.6974 21 6 0.9899 1.0111 7.2056 22 6 1.2369 -0.1704 6.5324 23 6 0.7246 -1.4748 7.0867 24 6 1.9544 -0.1558 5.3507 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3591 2.1313 0.0961 29 1 2.6162 1.4055 -0.9340 30 1 3.4966 3.3471 0.8234 31 1 4.6345 2.4393 1.8478 32 1 6.8033 4.6479 -0.1462 33 1 1.9906 2.5145 2.5375 34 1 1.4016 0.8406 2.3995 35 1 4.0058 2.8955 3.8392 36 1 2.5537 3.1559 5.1242 37 1 1.2677 3.1309 7.2236 38 1 0.4298 0.9996 8.1289 39 1 1.4744 -1.9076 7.7491 40 1 -0.1942 -1.2963 7.6455 41 1 0.5230 -2.1639 6.2666 42 1 2.1480 -1.0791 4.8249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930540733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = -4.840893 kcal Electronic energy + Delta-G solvation = -21204.771799 eV Core-core repulsion = 18150.088113 eV Total energy + Delta-G solvation = -3054.683685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.71993 -37.69547 -35.80254 -33.11109 -32.67726 -32.16441 -31.44007 -28.31033 -26.92769 -26.61188 -24.61755 -22.84969 -22.09824 -20.62186 -20.05022 -19.25154 -17.08736 -16.38207 -15.80121 -15.72288 -15.09553 -14.86531 -14.61233 -14.09137 -13.96804 -13.81347 -13.35189 -13.17963 -13.02806 -12.69436 -12.33357 -12.20738 -12.04366 -11.72423 -11.54516 -11.29471 -11.07414 -10.96408 -10.79272 -10.71380 -10.56375 -10.30151 -9.90839 -9.48319 -9.11813 -8.82705 -8.70027 -8.53947 -8.27987 -7.21939 -5.94816 -3.93707 1.36019 1.41120 2.66258 3.35729 3.42207 3.46630 3.75095 4.47495 4.62406 4.78276 4.86443 4.95361 5.09792 5.18564 5.28230 5.40335 5.42104 5.46282 5.50299 5.60419 5.61854 5.67763 5.72504 5.74958 6.02583 6.04929 6.09506 6.11260 6.30552 6.44255 6.48903 6.56312 6.58224 6.76176 7.00782 7.03076 7.05889 7.42097 7.53907 7.87540 8.11445 8.25766 8.29642 8.63147 9.12887 9.68430 11.16238 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.004567 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.361208 B = 6129.522724 C = 7036.279789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.119 4.119 3 C 0.079 3.921 4 N -0.526 5.526 5 C 0.172 3.828 6 C -0.505 4.505 7 H 0.060 0.940 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.283 1.283 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.033 3.967 15 C 0.153 3.847 16 H 0.111 0.889 17 O -0.534 6.534 18 C -0.099 4.099 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.110 4.110 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.022 0.978 29 H 0.097 0.903 30 H -0.019 1.019 31 H 0.076 0.924 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.367 0.633 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -6.699 11.977 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.138 4.138 3 C -0.048 4.048 4 N -0.250 5.250 5 C 0.047 3.953 6 C -0.544 4.544 7 H 0.078 0.922 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.096 4.096 15 C 0.094 3.906 16 H 0.128 0.872 17 O -0.339 6.339 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.089 4.089 23 C -0.170 4.170 24 C -0.128 4.128 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.127 0.873 28 H 0.040 0.960 29 H 0.115 0.885 30 H -0.001 1.001 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.215 0.785 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.269 -7.514 11.873 18.011 hybrid contribution -0.255 1.217 -0.744 1.449 sum -11.524 -6.296 11.129 17.213 Atomic orbital electron populations 1.23697 0.96027 1.00955 1.05310 1.23193 0.95272 0.99657 0.95676 1.21230 0.93961 0.92294 0.97351 1.62089 1.13538 1.50787 0.98633 1.20270 0.89412 0.85745 0.99848 1.21178 1.14970 1.07445 1.10801 0.92183 1.24935 0.97386 0.95179 0.96986 1.69957 1.31967 1.12552 1.39242 0.86571 0.79765 0.78522 0.82982 1.20936 1.21318 1.19856 1.22652 0.96227 0.98851 0.91912 1.20843 0.86485 0.95013 0.88303 0.87157 1.86765 1.32896 1.20579 1.93682 1.20783 0.98090 0.93510 0.97636 1.20933 0.99051 0.97841 0.95724 1.21068 0.98173 0.97859 0.96191 1.20972 1.01424 0.92280 0.99966 1.19889 0.98338 0.95379 0.95291 1.20778 1.00774 0.94297 1.01110 1.20902 0.98506 0.97645 0.95754 0.89167 0.89289 0.87344 0.95955 0.88500 1.00088 0.90672 0.93126 0.95532 0.91305 0.78487 0.86178 0.86198 0.86454 0.91288 0.91766 0.91523 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.11 14.32 29.02 0.42 -2.70 16 2 C -0.12 -1.94 8.74 -36.03 -0.31 -2.26 16 3 C 0.08 1.55 5.25 -4.97 -0.03 1.53 16 4 N -0.53 -11.17 4.40 -237.52 -1.04 -12.22 16 5 C 0.17 4.41 4.49 -4.98 -0.02 4.38 16 6 C -0.51 -14.23 8.28 -34.44 -0.29 -14.52 16 7 H 0.06 1.68 7.15 -52.49 -0.38 1.31 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.03 0.58 4.60 -3.82 -0.02 0.56 16 15 C 0.15 2.57 3.41 -27.88 -0.09 2.47 16 16 H 0.11 1.94 8.00 -51.93 -0.42 1.52 16 17 O -0.53 -10.15 10.17 -35.23 -0.36 -10.50 16 18 C -0.10 -1.42 4.97 -104.62 -0.52 -1.94 16 19 C -0.12 -1.55 9.32 -39.59 -0.37 -1.92 16 20 C -0.11 -1.33 10.05 -39.59 -0.40 -1.73 16 21 C -0.13 -1.42 9.70 -39.58 -0.38 -1.80 16 22 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 23 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 24 C -0.11 -1.42 9.33 -39.58 -0.37 -1.79 16 25 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 26 H 0.09 1.22 7.84 -52.48 -0.41 0.81 16 27 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.02 0.43 7.71 -51.93 -0.40 0.03 16 29 H 0.10 2.10 6.47 -51.93 -0.34 1.76 16 30 H -0.02 -0.52 8.13 -51.93 -0.42 -0.94 16 31 H 0.08 2.03 5.00 -51.92 -0.26 1.77 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.03 0.48 8.03 -51.93 -0.42 0.06 16 34 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 35 H 0.37 6.04 7.49 45.56 0.34 6.38 16 36 H 0.12 1.47 6.78 -52.48 -0.36 1.12 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -31.01 345.13 -9.16 -40.17 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -5.93 Total: 6.90 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.74 Total: -20.44 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.31 Total: -38.21 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.36 Total: -10.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.01 -9.16 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.325 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds