Wall clock time and date at job start Mon Mar 30 2020 02:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00319 * 2 1 4 4 N 1.46905 * 109.47219 * 125.35678 * 3 2 1 5 5 C 1.46898 * 110.99787 * 164.34580 * 4 3 2 6 6 C 1.50703 * 109.47374 * 295.44838 * 5 4 3 7 7 H 1.07999 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99486 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46716 * 90.00380 * 10 8 6 12 12 H 1.48495 * 109.47288 * 210.00112 * 10 8 6 13 13 H 1.48495 * 109.46932 * 330.00408 * 10 8 6 14 14 C 1.46897 * 111.00271 * 288.30707 * 4 3 2 15 15 C 1.53002 * 109.47061 * 162.16071 * 14 4 3 16 16 H 1.09002 * 109.46662 * 307.02939 * 15 14 4 17 17 O 1.42893 * 109.47396 * 67.03387 * 15 14 4 18 18 C 1.50695 * 109.47070 * 187.03508 * 15 14 4 19 19 C 1.38258 * 120.00290 * 279.72437 * 18 15 14 20 20 C 1.38205 * 120.00367 * 179.76779 * 19 18 15 21 21 C 1.38254 * 119.99959 * 0.50198 * 20 19 18 22 22 C 1.38213 * 119.99924 * 359.75134 * 21 20 19 23 23 C 1.50705 * 120.00049 * 179.97438 * 22 21 20 24 24 C 1.38218 * 120.00076 * 99.99497 * 18 15 14 25 25 H 1.08006 * 119.99988 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.00321 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99901 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46800 * 5.36819 * 3 2 1 29 29 H 1.08991 * 109.47509 * 245.36131 * 3 2 1 30 30 H 1.08995 * 109.46997 * 55.45038 * 5 4 3 31 31 H 1.09007 * 109.47196 * 175.44776 * 5 4 3 32 32 H 0.97002 * 119.99469 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46829 * 282.15530 * 14 4 3 34 34 H 1.08994 * 109.47207 * 42.15671 * 14 4 3 35 35 H 0.96701 * 114.00465 * 59.99564 * 17 15 14 36 36 H 1.08007 * 119.99722 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.00146 * 180.22956 * 20 19 18 38 38 H 1.07999 * 120.00326 * 179.72433 * 21 20 19 39 39 H 1.09001 * 109.46970 * 270.02283 * 23 22 21 40 40 H 1.09003 * 109.47143 * 30.01897 * 23 22 21 41 41 H 1.08997 * 109.46936 * 150.01876 * 23 22 21 42 42 H 1.08002 * 119.99812 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0024 1.3283 1.1296 5 6 4.0022 2.3913 0.9612 6 6 4.8528 2.0943 -0.2469 7 1 4.6688 1.2049 -0.8314 8 6 5.8659 2.9578 -0.6060 9 7 6.0903 4.0405 0.1062 10 14 6.9207 2.5892 -2.1029 11 1 6.3057 3.2059 -3.3057 12 1 8.2809 3.1494 -1.9001 13 1 7.0139 1.1194 -2.2930 14 6 2.2883 1.4744 2.4049 15 6 3.2071 1.0564 3.5547 16 1 3.6043 0.0605 3.3586 17 8 4.2862 1.9867 3.6645 18 6 2.4247 1.0404 4.8425 19 6 2.1821 2.2217 5.5188 20 6 1.4604 2.2077 6.6974 21 6 0.9899 1.0111 7.2056 22 6 1.2369 -0.1704 6.5324 23 6 0.7246 -1.4748 7.0867 24 6 1.9544 -0.1558 5.3507 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3591 2.1313 0.0961 29 1 2.6162 1.4055 -0.9340 30 1 3.4966 3.3471 0.8234 31 1 4.6345 2.4393 1.8478 32 1 6.8033 4.6479 -0.1462 33 1 1.9906 2.5145 2.5375 34 1 1.4016 0.8406 2.3995 35 1 4.0058 2.8955 3.8392 36 1 2.5537 3.1559 5.1242 37 1 1.2677 3.1309 7.2236 38 1 0.4298 0.9996 8.1289 39 1 1.4744 -1.9076 7.7491 40 1 -0.1942 -1.2963 7.6455 41 1 0.5230 -2.1639 6.2666 42 1 2.1480 -1.0791 4.8249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930540733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:14 Heat of formation + Delta-G solvation = -24.204222 kcal Electronic energy + Delta-G solvation = -21205.611456 eV Core-core repulsion = 18150.088113 eV Total energy + Delta-G solvation = -3055.523342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80759 -39.10600 -37.26140 -34.96691 -33.82619 -33.58500 -32.59098 -29.89413 -28.36473 -27.71061 -26.19075 -24.48364 -23.06486 -22.22178 -21.25462 -20.57853 -18.57675 -18.14461 -17.08705 -16.96580 -16.70068 -16.32193 -15.98778 -15.58454 -15.06979 -14.80161 -14.75936 -14.58015 -14.13796 -13.95923 -13.93350 -13.46935 -13.17336 -13.08589 -12.90325 -12.73330 -12.67896 -12.46462 -12.30969 -12.17568 -11.97066 -11.84684 -11.61789 -11.30577 -10.76707 -10.47847 -10.13239 -9.71940 -9.50397 -8.98495 -8.14600 -6.21214 0.39816 0.47802 1.40208 1.41641 1.43050 1.53199 2.43000 2.78861 3.17674 3.26958 3.57497 3.83383 3.91145 4.04266 4.14570 4.21495 4.25022 4.25763 4.33042 4.53377 4.55550 4.62261 4.69893 4.77996 4.87069 4.90836 4.94142 5.04633 5.09650 5.15350 5.30988 5.32988 5.52024 5.56385 5.65712 5.68643 5.71079 5.75398 5.91992 6.11996 6.17863 6.42906 6.68959 6.76277 6.94322 7.45644 8.96422 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.004567 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.361208 B = 6129.522724 C = 7036.279789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C 0.082 3.918 4 N -0.533 5.533 5 C 0.187 3.813 6 C -0.522 4.522 7 H 0.056 0.944 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.041 3.959 15 C 0.160 3.840 16 H 0.098 0.902 17 O -0.559 6.559 18 C -0.115 4.115 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.122 4.122 25 H 0.121 0.879 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.020 0.980 29 H 0.067 0.933 30 H -0.051 1.051 31 H 0.061 0.939 32 H 0.262 0.738 33 H 0.020 0.980 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.119 0.881 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -8.182 12.862 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.045 4.045 4 N -0.257 5.257 5 C 0.062 3.938 6 C -0.561 4.561 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.192 1.192 14 C -0.088 4.088 15 C 0.100 3.900 16 H 0.116 0.884 17 O -0.365 6.365 18 C -0.116 4.116 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.092 4.092 23 C -0.168 4.168 24 C -0.141 4.141 25 H 0.139 0.861 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.038 0.962 29 H 0.086 0.914 30 H -0.034 1.034 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.223 0.777 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.011 -9.012 12.760 20.330 hybrid contribution 0.157 1.671 -0.946 1.927 sum -12.853 -7.341 11.814 18.939 Atomic orbital electron populations 1.23945 0.94996 1.02588 1.00904 1.22896 0.95972 0.97741 0.99635 1.21163 0.93440 0.94523 0.95417 1.62027 1.14261 1.48662 1.00717 1.19919 0.89944 0.85535 0.98427 1.21507 1.15553 1.07365 1.11631 0.92576 1.25803 0.98696 0.94936 1.00026 1.70082 1.32644 1.13466 1.40948 0.85497 0.77901 0.78575 0.79326 1.19962 1.20792 1.19201 1.22654 0.96708 0.98816 0.90574 1.20732 0.85987 0.93716 0.89532 0.88388 1.86698 1.34534 1.21432 1.93854 1.20524 0.99318 0.94796 0.96935 1.21060 0.99938 0.97492 0.96717 1.21370 0.97324 0.99343 0.95483 1.21376 1.00717 0.91730 1.00677 1.20256 0.97376 0.97021 0.94500 1.20834 1.01650 0.92784 1.01529 1.21066 0.98997 0.97268 0.96719 0.86130 0.88824 0.87066 0.96200 0.91450 1.03387 0.92173 0.92965 0.96184 0.89571 0.77718 0.86326 0.83940 0.83570 0.90392 0.90049 0.91054 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.72 14.32 67.79 0.97 -3.75 16 2 C -0.14 -4.55 8.74 25.65 0.22 -4.33 16 3 C 0.08 3.31 5.25 85.55 0.45 3.76 16 4 N -0.53 -23.51 4.40 -905.39 -3.98 -27.49 16 5 C 0.19 10.14 4.49 85.56 0.38 10.52 16 6 C -0.52 -30.48 8.28 25.60 0.21 -30.26 16 7 H 0.06 3.24 7.15 -2.91 -0.02 3.22 16 8 C 0.00 0.19 5.46 84.65 0.46 0.65 16 9 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 10 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 C 0.04 1.50 4.60 86.30 0.40 1.90 16 15 C 0.16 5.55 3.41 29.85 0.10 5.65 16 16 H 0.10 3.59 8.00 -2.39 -0.02 3.57 16 17 O -0.56 -22.44 10.17 -148.98 -1.52 -23.96 16 18 C -0.11 -3.30 4.97 -19.87 -0.10 -3.40 16 19 C -0.13 -3.51 9.32 22.27 0.21 -3.31 16 20 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 21 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 22 C -0.09 -1.88 5.88 -19.86 -0.12 -2.00 16 23 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 24 C -0.12 -3.05 9.33 22.27 0.21 -2.85 16 25 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 26 H 0.09 2.31 7.84 -2.91 -0.02 2.29 16 27 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.02 0.79 7.71 -2.39 -0.02 0.77 16 29 H 0.07 3.06 6.47 -2.39 -0.02 3.05 16 30 H -0.05 -3.05 8.13 -2.39 -0.02 -3.07 16 31 H 0.06 3.44 5.00 -2.38 -0.01 3.43 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.02 0.76 8.03 -2.39 -0.02 0.74 16 34 H 0.09 2.83 7.13 -2.39 -0.02 2.81 16 35 H 0.37 13.28 7.49 -74.06 -0.55 12.73 16 36 H 0.12 3.01 6.78 -2.91 -0.02 2.99 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 41 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.13 2.93 8.04 -2.91 -0.02 2.91 16 Total: -1.00 -68.41 345.13 1.80 -66.60 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.44 Total: 26.69 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 4.55 Total: -32.77 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.70 Total: -84.23 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.52 Total: -23.96 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.41 1.80 -66.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930540733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.398 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds