Wall clock time and date at job start Mon Mar 30 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.76204 * 2 1 4 4 C 1.53040 * 109.76932 * 239.21406 * 2 1 3 5 5 C 1.50809 * 109.65374 * 193.08290 * 4 2 1 6 6 C 1.38618 * 118.12131 * 195.48119 * 5 4 2 7 7 C 1.38051 * 120.48500 * 180.39312 * 6 5 4 8 8 C 1.38309 * 119.89058 * 359.97438 * 7 6 5 9 9 C 1.37811 * 119.95365 * 359.87227 * 8 7 6 10 10 C 1.38367 * 122.01297 * 15.66167 * 5 4 2 11 11 N 1.39405 * 122.96296 * 359.25136 * 10 5 4 12 12 C 1.46901 * 111.00026 * 254.62150 * 11 10 5 13 13 C 1.52995 * 109.47076 * 277.92930 * 12 11 10 14 14 H 1.09002 * 109.46954 * 60.00293 * 13 12 11 15 15 O 1.42901 * 109.47297 * 300.00242 * 13 12 11 16 16 C 1.50705 * 109.46968 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00120 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99769 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00324 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99964 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47173 * 59.99171 * 20 18 16 22 22 H 1.48492 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46594 * 299.99420 * 20 18 16 24 24 C 1.46430 * 113.12605 * 20.17099 * 11 10 5 25 25 H 1.08999 * 109.46976 * 299.26575 * 1 2 3 26 26 H 1.08998 * 109.46956 * 59.26754 * 1 2 3 27 27 H 1.09002 * 109.46913 * 179.26832 * 1 2 3 28 28 H 1.08996 * 109.47423 * 202.37128 * 3 2 1 29 29 H 1.09000 * 109.47382 * 322.37339 * 3 2 1 30 30 H 1.09001 * 109.47356 * 82.37142 * 3 2 1 31 31 H 1.08994 * 109.44210 * 313.13535 * 4 2 1 32 32 H 1.08994 * 109.44226 * 73.06384 * 4 2 1 33 33 H 1.08005 * 119.75561 * 0.44690 * 6 5 4 34 34 H 1.08005 * 120.04991 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.02029 * 180.14916 * 8 7 6 36 36 H 1.07992 * 119.78817 * 180.10031 * 9 8 7 37 37 H 1.08995 * 109.47244 * 37.93173 * 12 11 10 38 38 H 1.09002 * 109.46990 * 157.93245 * 12 11 10 39 39 H 0.96697 * 114.00020 * 299.99369 * 15 13 12 40 40 H 0.96998 * 120.00521 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.60740 * 66.39698 * 24 11 10 42 42 H 1.09004 * 109.60284 * 186.89369 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0473 1.4399 0.0000 4 6 2.0476 -0.7371 -1.2373 5 6 3.5210 -1.0181 -1.0808 6 6 4.2409 -1.3782 -2.2093 7 6 5.5907 -1.6542 -2.1205 8 6 6.2322 -1.5711 -0.8980 9 6 5.5237 -1.2107 0.2277 10 6 4.1586 -0.9297 0.1440 11 7 3.5006 -0.5626 1.3169 12 6 3.8457 0.8111 1.7063 13 6 5.1813 0.8094 2.4526 14 1 5.9599 0.4095 1.8030 15 8 5.0724 -0.0042 3.6223 16 6 5.5349 2.2187 2.8527 17 1 4.8730 3.0340 2.6003 18 6 6.7035 2.4673 3.5409 19 7 7.5093 1.4745 3.8487 20 14 7.1416 4.2140 4.0374 21 1 6.0809 4.7576 4.9232 22 1 8.4380 4.2124 4.7616 23 1 7.2539 5.0605 2.8224 24 6 2.0488 -0.7376 1.2407 25 1 -0.3633 0.5024 0.8965 26 1 -0.3633 0.5252 -0.8833 27 1 -0.3633 -1.0276 -0.0131 28 1 3.0645 1.4606 -0.3911 29 1 1.4042 2.0571 -0.6274 30 1 2.0418 1.8280 1.0186 31 1 1.5090 -1.6779 -1.3509 32 1 1.8886 -0.1191 -2.1208 33 1 3.7424 -1.4425 -3.1653 34 1 6.1447 -1.9345 -3.0043 35 1 7.2885 -1.7842 -0.8266 36 1 6.0276 -1.1451 1.1806 37 1 3.9287 1.4317 0.8142 38 1 3.0670 1.2111 2.3559 39 1 4.3970 0.2935 4.2470 40 1 8.3313 1.6493 4.3332 41 1 1.8119 -1.7985 1.1612 42 1 1.5830 -0.3223 2.1344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930545468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:33 Heat of formation + Delta-G solvation = -9.545413 kcal Electronic energy + Delta-G solvation = -22567.252154 eV Core-core repulsion = 19512.364466 eV Total energy + Delta-G solvation = -3054.887689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81497 -37.26103 -35.94157 -33.92951 -32.04838 -31.38555 -29.67157 -28.83290 -27.22658 -26.41829 -25.17435 -23.65817 -21.65157 -21.53517 -20.01657 -18.30378 -16.96595 -16.55768 -15.54451 -15.34031 -14.84851 -14.52372 -14.41167 -14.13676 -13.81384 -13.45916 -13.27849 -13.16602 -12.62658 -12.35136 -12.15596 -12.09005 -11.81954 -11.70593 -11.34618 -11.17324 -11.09398 -10.91300 -10.88274 -10.64567 -10.50701 -10.30143 -10.19246 -9.97038 -9.10587 -8.63393 -8.53063 -8.27091 -7.97269 -7.22452 -5.98324 -4.16450 1.77129 1.84985 3.29320 3.34947 3.36258 4.11898 4.32054 4.46927 4.73805 4.85743 4.86152 5.23988 5.29239 5.33888 5.46252 5.49530 5.55144 5.63233 5.69317 5.78756 5.87395 5.87770 5.94496 6.00320 6.03089 6.12239 6.19757 6.25159 6.33579 6.34147 6.48989 6.52316 6.60511 6.79808 6.85929 6.90402 7.00156 7.28546 7.58824 7.76767 7.89177 8.02365 8.22428 8.86839 9.48064 9.64319 11.05651 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.006405 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.185117 B = 4370.579538 C = 5173.032477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C -0.154 4.154 4 C -0.062 4.062 5 C -0.131 4.131 6 C -0.113 4.113 7 C -0.145 4.145 8 C -0.112 4.112 9 C -0.113 4.113 10 C 0.129 3.871 11 N -0.488 5.488 12 C 0.023 3.977 13 C 0.227 3.773 14 H 0.065 0.935 15 O -0.555 6.555 16 C -0.574 4.574 17 H 0.053 0.947 18 C 0.082 3.918 19 N -0.858 5.858 20 Si 0.887 3.113 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.069 3.931 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.143 0.857 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.340 0.660 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -4.378 -9.986 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C -0.211 4.211 4 C -0.099 4.099 5 C -0.134 4.134 6 C -0.132 4.132 7 C -0.163 4.163 8 C -0.131 4.131 9 C -0.133 4.133 10 C 0.032 3.968 11 N -0.202 5.202 12 C -0.101 4.101 13 C 0.169 3.831 14 H 0.083 0.917 15 O -0.356 6.356 16 C -0.613 4.613 17 H 0.071 0.929 18 C -0.125 4.125 19 N -0.493 5.493 20 Si 0.714 3.286 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.059 4.059 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.161 0.839 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.183 0.817 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.872 -5.049 -9.772 14.780 hybrid contribution -0.402 1.822 -0.122 1.870 sum -10.274 -3.227 -9.894 14.624 Atomic orbital electron populations 1.21787 0.94163 1.01525 1.01717 1.21267 0.95795 0.96248 0.97039 1.22495 1.01280 0.94704 1.02620 1.20550 0.91808 0.99784 0.97754 1.19869 0.96196 1.04542 0.92746 1.20798 0.94301 1.00934 0.97173 1.20918 0.94646 1.03263 0.97511 1.21006 0.99683 0.99772 0.92606 1.21589 0.93302 0.98408 0.99968 1.18554 0.93143 0.97548 0.87581 1.58639 1.07239 1.25863 1.28481 1.23776 1.01714 0.84562 1.00040 1.19641 0.89446 0.89972 0.84012 0.91724 1.86570 1.60412 1.55710 1.32949 1.21606 1.06756 0.93560 1.39369 0.92921 1.24993 0.95897 0.96531 0.95051 1.70061 1.11260 1.30535 1.37467 0.86774 0.77763 0.85294 0.78751 1.20191 1.21181 1.20232 1.22328 0.87232 0.99983 0.96397 0.92455 0.92820 0.92729 0.91363 0.93345 0.91350 0.91193 0.91167 0.87038 0.86843 0.86296 0.83915 0.92410 0.91573 0.81702 0.92957 0.91019 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.39 37.16 0.31 -1.07 16 2 C -0.10 -1.32 0.79 -154.29 -0.12 -1.44 16 3 C -0.15 -2.20 6.90 37.16 0.26 -1.94 16 4 C -0.06 -0.80 4.57 -27.81 -0.13 -0.93 16 5 C -0.13 -2.05 5.11 -104.38 -0.53 -2.59 16 6 C -0.11 -1.64 9.63 -39.51 -0.38 -2.02 16 7 C -0.14 -2.12 10.05 -39.62 -0.40 -2.52 16 8 C -0.11 -1.86 10.03 -39.71 -0.40 -2.26 16 9 C -0.11 -2.20 8.50 -39.22 -0.33 -2.53 16 10 C 0.13 2.36 4.60 -83.85 -0.39 1.98 16 11 N -0.49 -8.99 4.30 -171.29 -0.74 -9.72 16 12 C 0.02 0.46 2.75 -3.83 -0.01 0.45 16 13 C 0.23 5.66 2.53 -27.88 -0.07 5.59 16 14 H 0.07 1.77 5.12 -51.93 -0.27 1.50 16 15 O -0.55 -14.30 12.60 -35.23 -0.44 -14.74 16 16 C -0.57 -15.60 8.76 -34.44 -0.30 -15.90 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 19 N -0.86 -25.22 12.84 55.43 0.71 -24.51 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.07 1.03 4.86 -3.88 -0.02 1.01 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.13 4.98 -51.93 -0.26 0.87 16 29 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 30 H 0.07 1.02 5.74 -51.93 -0.30 0.73 16 31 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.14 3.18 5.97 -52.49 -0.31 2.86 16 37 H 0.06 1.18 4.62 -51.93 -0.24 0.94 16 38 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 39 H 0.34 7.89 9.04 45.56 0.41 8.30 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 42 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -29.93 319.96 -8.73 -38.66 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.45 Total: 11.40 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -2.61 Total: -22.00 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.03 Total: -34.23 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.44 Total: -14.74 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.93 -8.73 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930545468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.111 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds