Wall clock time and date at job start Mon Mar 30 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.76204 * 2 1 4 4 C 1.53040 * 109.76932 * 239.21406 * 2 1 3 5 5 C 1.50809 * 109.65374 * 193.08290 * 4 2 1 6 6 C 1.38618 * 118.12131 * 195.48119 * 5 4 2 7 7 C 1.38051 * 120.48500 * 180.39312 * 6 5 4 8 8 C 1.38309 * 119.89058 * 359.97438 * 7 6 5 9 9 C 1.37811 * 119.95365 * 359.87227 * 8 7 6 10 10 C 1.38367 * 122.01297 * 15.66167 * 5 4 2 11 11 N 1.39405 * 122.96296 * 359.25136 * 10 5 4 12 12 C 1.46901 * 111.00026 * 254.62150 * 11 10 5 13 13 C 1.52995 * 109.47076 * 277.92930 * 12 11 10 14 14 H 1.09002 * 109.46954 * 60.00293 * 13 12 11 15 15 O 1.42901 * 109.47297 * 300.00242 * 13 12 11 16 16 C 1.50705 * 109.46968 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00120 * 0.02562 * 16 13 12 18 18 C 1.37880 * 119.99769 * 180.02562 * 16 13 12 19 19 N 1.31516 * 120.00324 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99964 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47173 * 59.99171 * 20 18 16 22 22 H 1.48492 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46594 * 299.99420 * 20 18 16 24 24 C 1.46430 * 113.12605 * 20.17099 * 11 10 5 25 25 H 1.08999 * 109.46976 * 299.26575 * 1 2 3 26 26 H 1.08998 * 109.46956 * 59.26754 * 1 2 3 27 27 H 1.09002 * 109.46913 * 179.26832 * 1 2 3 28 28 H 1.08996 * 109.47423 * 202.37128 * 3 2 1 29 29 H 1.09000 * 109.47382 * 322.37339 * 3 2 1 30 30 H 1.09001 * 109.47356 * 82.37142 * 3 2 1 31 31 H 1.08994 * 109.44210 * 313.13535 * 4 2 1 32 32 H 1.08994 * 109.44226 * 73.06384 * 4 2 1 33 33 H 1.08005 * 119.75561 * 0.44690 * 6 5 4 34 34 H 1.08005 * 120.04991 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.02029 * 180.14916 * 8 7 6 36 36 H 1.07992 * 119.78817 * 180.10031 * 9 8 7 37 37 H 1.08995 * 109.47244 * 37.93173 * 12 11 10 38 38 H 1.09002 * 109.46990 * 157.93245 * 12 11 10 39 39 H 0.96697 * 114.00020 * 299.99369 * 15 13 12 40 40 H 0.96998 * 120.00521 * 180.02562 * 19 18 16 41 41 H 1.08993 * 109.60740 * 66.39698 * 24 11 10 42 42 H 1.09004 * 109.60284 * 186.89369 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0473 1.4399 0.0000 4 6 2.0476 -0.7371 -1.2373 5 6 3.5210 -1.0181 -1.0808 6 6 4.2409 -1.3782 -2.2093 7 6 5.5907 -1.6542 -2.1205 8 6 6.2322 -1.5711 -0.8980 9 6 5.5237 -1.2107 0.2277 10 6 4.1586 -0.9297 0.1440 11 7 3.5006 -0.5626 1.3169 12 6 3.8457 0.8111 1.7063 13 6 5.1813 0.8094 2.4526 14 1 5.9599 0.4095 1.8030 15 8 5.0724 -0.0042 3.6223 16 6 5.5349 2.2187 2.8527 17 1 4.8730 3.0340 2.6003 18 6 6.7035 2.4673 3.5409 19 7 7.5093 1.4745 3.8487 20 14 7.1416 4.2140 4.0374 21 1 6.0809 4.7576 4.9232 22 1 8.4380 4.2124 4.7616 23 1 7.2539 5.0605 2.8224 24 6 2.0488 -0.7376 1.2407 25 1 -0.3633 0.5024 0.8965 26 1 -0.3633 0.5252 -0.8833 27 1 -0.3633 -1.0276 -0.0131 28 1 3.0645 1.4606 -0.3911 29 1 1.4042 2.0571 -0.6274 30 1 2.0418 1.8280 1.0186 31 1 1.5090 -1.6779 -1.3509 32 1 1.8886 -0.1191 -2.1208 33 1 3.7424 -1.4425 -3.1653 34 1 6.1447 -1.9345 -3.0043 35 1 7.2885 -1.7842 -0.8266 36 1 6.0276 -1.1451 1.1806 37 1 3.9287 1.4317 0.8142 38 1 3.0670 1.2111 2.3559 39 1 4.3970 0.2935 4.2470 40 1 8.3313 1.6493 4.3332 41 1 1.8119 -1.7985 1.1612 42 1 1.5830 -0.3223 2.1344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930545468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:32 Heat of formation + Delta-G solvation = -29.112708 kcal Electronic energy + Delta-G solvation = -22568.100656 eV Core-core repulsion = 19512.364466 eV Total energy + Delta-G solvation = -3055.736190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07185 -38.51148 -37.69088 -35.38784 -34.19561 -32.57534 -31.07911 -30.36848 -28.55470 -27.49189 -26.77681 -25.09539 -23.19265 -22.84345 -21.54536 -19.45214 -18.95057 -17.89657 -16.88129 -16.66179 -16.62598 -16.33839 -15.94632 -15.32531 -15.20431 -14.81201 -14.72619 -14.51826 -14.03886 -13.79844 -13.35346 -13.22242 -13.13649 -12.91864 -12.85960 -12.78280 -12.72870 -12.49407 -12.26058 -12.08621 -11.98604 -11.65902 -11.63316 -11.26522 -10.91015 -10.62130 -10.32533 -9.74419 -9.53383 -8.59051 -8.11606 -6.37616 0.51168 0.55907 1.38726 1.40459 1.48496 2.37636 2.83225 3.08709 3.14120 3.68419 3.78138 3.81979 4.06733 4.21390 4.28009 4.35179 4.35846 4.47317 4.53912 4.61485 4.62460 4.72728 4.76736 4.80537 4.87755 4.94217 4.95495 5.04637 5.07455 5.14479 5.19256 5.31791 5.37324 5.45389 5.52335 5.61219 5.62565 5.71450 5.85762 5.98098 6.12417 6.26511 6.67209 6.76836 7.35899 7.64125 8.92280 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.006405 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.185117 B = 4370.579538 C = 5173.032477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.059 4.059 5 C -0.131 4.131 6 C -0.109 4.109 7 C -0.138 4.138 8 C -0.124 4.124 9 C -0.147 4.147 10 C 0.107 3.893 11 N -0.505 5.505 12 C 0.049 3.951 13 C 0.225 3.775 14 H 0.033 0.967 15 O -0.572 6.572 16 C -0.588 4.588 17 H 0.057 0.943 18 C 0.027 3.973 19 N -0.899 5.899 20 Si 0.956 3.044 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.270 1.270 24 C 0.065 3.935 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.349 0.651 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 -3.847 -12.272 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 C -0.207 4.207 4 C -0.096 4.096 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.156 4.156 8 C -0.143 4.143 9 C -0.167 4.167 10 C 0.010 3.990 11 N -0.220 5.220 12 C -0.075 4.075 13 C 0.168 3.832 14 H 0.050 0.950 15 O -0.375 6.375 16 C -0.626 4.626 17 H 0.075 0.925 18 C -0.175 4.175 19 N -0.536 5.536 20 Si 0.781 3.219 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.195 1.195 24 C -0.062 4.062 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.192 0.808 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.245 -4.519 -12.068 17.776 hybrid contribution 0.347 1.587 0.544 1.713 sum -11.897 -2.933 -11.524 16.821 Atomic orbital electron populations 1.21736 0.91538 1.02701 1.02559 1.21208 0.97702 0.94841 0.95923 1.22399 1.00163 0.96168 1.02003 1.20639 0.89693 1.01050 0.98237 1.20231 0.98019 1.03271 0.91847 1.21273 0.94204 0.99061 0.98238 1.21295 0.95202 1.01713 0.97421 1.21174 1.00174 0.99991 0.92939 1.21418 0.94591 1.01560 0.99096 1.18656 0.92786 0.98840 0.88731 1.58440 1.09534 1.24437 1.29629 1.23308 0.98955 0.86109 0.99171 1.19547 0.91422 0.88560 0.83713 0.94967 1.86523 1.61085 1.56110 1.33747 1.22029 1.06900 0.94743 1.38953 0.92475 1.25867 0.95811 1.00750 0.95091 1.70221 1.11776 1.32963 1.38616 0.85667 0.77579 0.80061 0.78600 1.19056 1.21013 1.19467 1.22442 0.85053 1.00774 0.97912 0.92312 0.91317 0.91434 0.94094 0.91232 0.92724 0.89173 0.89233 0.83243 0.83428 0.85673 0.88517 0.92817 0.91022 0.80762 0.93095 0.90420 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.39 71.98 0.60 -1.54 16 2 C -0.10 -2.22 0.79 -52.04 -0.04 -2.26 16 3 C -0.15 -4.04 6.90 71.98 0.50 -3.55 16 4 C -0.06 -1.32 4.57 29.90 0.14 -1.19 16 5 C -0.13 -3.88 5.11 -19.71 -0.10 -3.98 16 6 C -0.11 -2.82 9.63 22.32 0.21 -2.61 16 7 C -0.14 -3.76 10.05 22.24 0.22 -3.54 16 8 C -0.12 -4.25 10.03 22.19 0.22 -4.03 16 9 C -0.15 -6.09 8.50 22.50 0.19 -5.90 16 10 C 0.11 3.99 4.60 38.30 0.18 4.17 16 11 N -0.51 -19.14 4.30 -695.83 -2.99 -22.13 16 12 C 0.05 2.06 2.75 86.30 0.24 2.30 16 13 C 0.23 11.89 2.53 29.85 0.08 11.96 16 14 H 0.03 1.93 5.12 -2.39 -0.01 1.92 16 15 O -0.57 -31.22 12.60 -148.98 -1.88 -33.09 16 16 C -0.59 -32.97 8.76 25.60 0.22 -32.75 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.03 1.55 5.40 84.65 0.46 2.01 16 19 N -0.90 -55.06 12.84 21.45 0.28 -54.78 16 20 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.07 1.89 4.86 86.52 0.42 2.31 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.04 1.32 4.98 -2.39 -0.01 1.31 16 29 H 0.07 1.55 7.94 -2.39 -0.02 1.53 16 30 H 0.05 1.59 5.74 -2.39 -0.01 1.58 16 31 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.09 1.71 8.09 -2.39 -0.02 1.69 16 33 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.10 4.83 5.97 -2.91 -0.02 4.82 16 37 H 0.05 2.29 4.62 -2.39 -0.01 2.28 16 38 H 0.07 2.85 6.44 -2.39 -0.02 2.84 16 39 H 0.35 17.00 9.04 -74.06 -0.67 16.33 16 40 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 42 H 0.08 2.25 7.71 -2.39 -0.02 2.23 16 Total: -1.00 -68.17 319.96 1.32 -66.84 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.35 Total: 35.66 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 3.54 Total: -38.59 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -2.72 Total: -76.92 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.88 Total: -33.09 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.17 1.32 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930545468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.731 kcal (2) G-P(sol) polarization free energy of solvation -68.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds