Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38316 * 120.02026 * 2 1 4 4 C 1.38058 * 119.88416 * 180.17332 * 3 2 1 5 5 C 1.38621 * 120.48409 * 0.02562 * 4 3 2 6 6 C 1.38370 * 119.86688 * 359.72139 * 5 4 3 7 7 C 1.37810 * 120.02161 * 180.02562 * 2 1 3 8 8 C 1.50694 * 119.79070 * 359.97238 * 7 2 1 9 9 N 1.39403 * 122.95375 * 180.49376 * 6 5 4 10 10 C 1.46899 * 111.00041 * 105.34170 * 9 6 5 11 11 C 1.52997 * 109.47254 * 169.99782 * 10 9 6 12 12 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99921 * 11 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.46421 * 113.13653 * 339.78467 * 9 6 5 23 23 C 1.53377 * 108.67211 * 53.35021 * 22 9 6 24 24 C 1.50799 * 118.11925 * 179.37153 * 5 4 3 25 25 H 1.09003 * 109.47222 * 89.99137 * 1 2 3 26 26 H 1.08999 * 109.47362 * 209.99823 * 1 2 3 27 27 H 1.09004 * 109.46671 * 329.99833 * 1 2 3 28 28 H 1.07994 * 120.06121 * 0.19652 * 3 2 1 29 29 H 1.07995 * 119.75691 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47301 * 269.98568 * 8 7 2 31 31 H 1.09006 * 109.47219 * 29.98297 * 8 7 2 32 32 H 1.08998 * 109.47163 * 149.98267 * 8 7 2 33 33 H 1.09002 * 109.47043 * 289.99853 * 10 9 6 34 34 H 1.09001 * 109.47354 * 49.99915 * 10 9 6 35 35 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.60160 * 173.10053 * 22 9 6 38 38 H 1.08999 * 109.60650 * 293.58399 * 22 9 6 39 39 H 1.09004 * 109.77228 * 172.17534 * 23 22 9 40 40 H 1.08995 * 109.81376 * 51.40818 * 23 22 9 41 41 H 1.09001 * 109.44279 * 284.64575 * 24 5 4 42 42 H 1.09000 * 109.44136 * 44.53927 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1976 0.0000 4 6 3.5796 1.1943 -0.0036 5 6 4.2800 -0.0019 -0.0078 6 6 3.5926 -1.2028 -0.0025 7 6 2.1965 -1.1932 -0.0005 8 6 1.4388 -2.4958 -0.0005 9 7 4.2312 -2.4420 0.0038 10 6 4.1489 -3.0699 1.3293 11 6 4.6332 -4.5183 1.2385 12 1 5.6665 -4.5350 0.8921 13 8 3.8107 -5.2388 0.3184 14 6 4.5494 -5.1623 2.5984 15 1 4.1866 -4.5952 3.4429 16 6 4.9349 -6.4756 2.7643 17 7 5.3762 -7.1663 1.7357 18 14 4.8317 -7.2736 4.4501 19 1 3.4975 -7.9037 4.6186 20 1 5.8878 -8.3103 4.5726 21 1 5.0275 -6.2411 5.4993 22 6 5.6182 -2.3769 -0.4608 23 6 6.3597 -1.3104 0.3547 24 6 5.7867 0.0567 -0.0262 25 1 -0.3634 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6604 2.1336 0.0032 29 1 4.1178 2.1306 -0.0040 30 1 1.2567 -2.8102 1.0272 31 1 0.4864 -2.3622 -0.5137 32 1 2.0250 -3.2572 -0.5150 33 1 4.7763 -2.5203 2.0312 34 1 3.1156 -3.0533 1.6757 35 1 2.8759 -5.2654 0.5640 36 1 5.6471 -8.0904 1.8523 37 1 6.0976 -3.3454 -0.3179 38 1 5.6378 -2.1088 -1.5172 39 1 7.4241 -1.3419 0.1217 40 1 6.2100 -1.4891 1.4195 41 1 6.1271 0.3269 -1.0258 42 1 6.1294 0.8055 0.6879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930669912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = -32.566642 kcal Electronic energy + Delta-G solvation = -22216.269538 eV Core-core repulsion = 19160.383574 eV Total energy + Delta-G solvation = -3055.885964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48446 -37.37711 -35.53134 -33.97435 -32.09655 -31.62418 -30.81185 -28.43623 -27.42698 -26.13322 -24.97300 -23.67329 -22.20967 -20.92483 -20.19613 -18.63905 -17.12793 -16.03357 -15.78277 -15.35390 -14.66160 -14.52523 -14.16764 -13.99809 -13.82194 -13.53821 -13.28686 -13.10135 -12.69558 -12.62468 -12.36690 -12.23852 -12.04053 -11.93394 -11.26256 -11.14616 -11.05597 -10.92135 -10.86475 -10.79696 -10.62768 -10.39500 -10.26472 -10.04122 -9.12955 -8.72892 -8.58073 -8.12707 -8.01870 -7.33056 -6.02569 -4.21019 1.59399 1.68231 3.26354 3.33676 3.36117 3.89620 4.29380 4.44733 4.93145 4.98402 5.13243 5.16969 5.23545 5.25841 5.35825 5.50131 5.58460 5.68202 5.71866 5.77575 5.88843 5.89822 5.96191 6.02552 6.06868 6.09204 6.18706 6.24146 6.29163 6.40724 6.43831 6.51437 6.67205 6.72581 6.77496 6.80751 6.96876 7.17011 7.53813 7.70151 7.81449 7.98858 8.16902 8.82441 9.43060 9.59101 11.01433 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.005481 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.797437 B = 5107.504184 C = 5766.102958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.131 4.131 6 C 0.129 3.871 7 C -0.088 4.088 8 C -0.113 4.113 9 N -0.485 5.485 10 C 0.034 3.966 11 C 0.237 3.763 12 H 0.057 0.943 13 O -0.553 6.553 14 C -0.574 4.574 15 H 0.054 0.946 16 C 0.082 3.918 17 N -0.858 5.858 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.055 3.945 23 C -0.160 4.160 24 C -0.073 4.073 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.342 0.658 36 H 0.260 0.740 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 14.521 -3.810 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.083 4.083 3 C -0.163 4.163 4 C -0.128 4.128 5 C -0.134 4.134 6 C 0.031 3.969 7 C -0.090 4.090 8 C -0.170 4.170 9 N -0.199 5.199 10 C -0.090 4.090 11 C 0.179 3.821 12 H 0.075 0.925 13 O -0.355 6.355 14 C -0.613 4.613 15 H 0.072 0.928 16 C -0.125 4.125 17 N -0.493 5.493 18 Si 0.715 3.285 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.072 4.072 23 C -0.198 4.198 24 C -0.110 4.110 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.028 13.893 -4.502 15.149 hybrid contribution -0.032 0.284 1.796 1.819 sum -4.060 14.176 -2.705 14.992 Atomic orbital electron populations 1.20771 0.91636 1.02456 1.01920 1.19550 0.95600 0.92511 1.00647 1.20753 0.93986 0.97032 1.04497 1.20821 0.94051 0.96759 1.01173 1.19920 0.95684 0.92876 1.04941 1.18561 0.92382 0.88524 0.97402 1.19687 0.92102 0.95181 1.02011 1.20835 0.99054 0.95037 1.02050 1.58557 1.16401 1.17383 1.27553 1.23251 1.01578 0.98957 0.85254 1.19382 0.91196 0.82782 0.88776 0.92549 1.86572 1.20064 1.77514 1.51355 1.21610 1.46990 0.97653 0.95020 0.92756 1.24998 0.93907 0.97259 0.96309 1.70078 1.40623 1.09219 1.29391 0.86688 0.77896 0.79235 0.84649 1.20482 1.21110 1.19894 1.22241 0.86959 0.99754 0.98287 1.22203 1.00325 0.95609 1.01704 1.20466 0.91150 0.97971 1.01442 0.91539 0.91311 0.92067 0.86802 0.86883 0.91670 0.92494 0.89271 0.94694 0.91098 0.81469 0.92967 0.88687 0.91159 0.91012 0.91092 0.91127 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.18 36.01 0.33 -0.89 16 2 C -0.08 -1.16 5.87 -104.75 -0.61 -1.78 16 3 C -0.14 -1.91 9.71 -39.62 -0.38 -2.30 16 4 C -0.11 -1.50 9.63 -39.51 -0.38 -1.88 16 5 C -0.13 -2.03 5.74 -104.38 -0.60 -2.63 16 6 C 0.13 2.23 5.12 -83.85 -0.43 1.80 16 7 C -0.09 -1.42 5.69 -104.27 -0.59 -2.01 16 8 C -0.11 -1.73 7.69 36.00 0.28 -1.45 16 9 N -0.48 -8.98 3.39 -171.29 -0.58 -9.56 16 10 C 0.03 0.70 4.01 -3.83 -0.02 0.68 16 11 C 0.24 5.80 2.66 -27.89 -0.07 5.72 16 12 H 0.06 1.51 6.24 -51.93 -0.32 1.19 16 13 O -0.55 -13.92 12.60 -35.23 -0.44 -14.36 16 14 C -0.57 -15.42 8.76 -34.44 -0.30 -15.72 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 17 N -0.86 -24.92 12.84 55.43 0.71 -24.21 16 18 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.06 0.95 5.68 -3.89 -0.02 0.93 16 23 C -0.16 -2.38 6.03 -26.51 -0.16 -2.54 16 24 C -0.07 -0.99 5.81 -27.81 -0.16 -1.15 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.74 6.68 -51.93 -0.35 0.39 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.06 0.99 7.22 -51.93 -0.38 0.62 16 31 H 0.06 0.74 6.67 -51.93 -0.35 0.39 16 32 H 0.09 1.54 7.27 -51.93 -0.38 1.16 16 33 H 0.03 0.73 6.41 -51.93 -0.33 0.40 16 34 H 0.07 1.45 5.80 -51.93 -0.30 1.14 16 35 H 0.34 7.77 9.04 45.56 0.41 8.18 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.09 1.83 5.88 -51.92 -0.31 1.52 16 38 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.18 6.39 -51.93 -0.33 0.84 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -29.67 325.18 -9.21 -38.87 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.55 Total: 9.55 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -3.22 Total: -21.08 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.13 Total: -33.77 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.44 Total: -14.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.67 -9.21 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930669912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.308 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds