Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38316 * 120.02026 * 2 1 4 4 C 1.38058 * 119.88416 * 180.17332 * 3 2 1 5 5 C 1.38621 * 120.48409 * 0.02562 * 4 3 2 6 6 C 1.38370 * 119.86688 * 359.72139 * 5 4 3 7 7 C 1.37810 * 120.02161 * 180.02562 * 2 1 3 8 8 C 1.50694 * 119.79070 * 359.97238 * 7 2 1 9 9 N 1.39403 * 122.95375 * 180.49376 * 6 5 4 10 10 C 1.46899 * 111.00041 * 105.34170 * 9 6 5 11 11 C 1.52997 * 109.47254 * 169.99782 * 10 9 6 12 12 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99921 * 11 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.46421 * 113.13653 * 339.78467 * 9 6 5 23 23 C 1.53377 * 108.67211 * 53.35021 * 22 9 6 24 24 C 1.50799 * 118.11925 * 179.37153 * 5 4 3 25 25 H 1.09003 * 109.47222 * 89.99137 * 1 2 3 26 26 H 1.08999 * 109.47362 * 209.99823 * 1 2 3 27 27 H 1.09004 * 109.46671 * 329.99833 * 1 2 3 28 28 H 1.07994 * 120.06121 * 0.19652 * 3 2 1 29 29 H 1.07995 * 119.75691 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47301 * 269.98568 * 8 7 2 31 31 H 1.09006 * 109.47219 * 29.98297 * 8 7 2 32 32 H 1.08998 * 109.47163 * 149.98267 * 8 7 2 33 33 H 1.09002 * 109.47043 * 289.99853 * 10 9 6 34 34 H 1.09001 * 109.47354 * 49.99915 * 10 9 6 35 35 H 0.96696 * 114.00036 * 299.99911 * 13 11 10 36 36 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.60160 * 173.10053 * 22 9 6 38 38 H 1.08999 * 109.60650 * 293.58399 * 22 9 6 39 39 H 1.09004 * 109.77228 * 172.17534 * 23 22 9 40 40 H 1.08995 * 109.81376 * 51.40818 * 23 22 9 41 41 H 1.09001 * 109.44279 * 284.64575 * 24 5 4 42 42 H 1.09000 * 109.44136 * 44.53927 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1976 0.0000 4 6 3.5796 1.1943 -0.0036 5 6 4.2800 -0.0019 -0.0078 6 6 3.5926 -1.2028 -0.0025 7 6 2.1965 -1.1932 -0.0005 8 6 1.4388 -2.4958 -0.0005 9 7 4.2312 -2.4420 0.0038 10 6 4.1489 -3.0699 1.3293 11 6 4.6332 -4.5183 1.2385 12 1 5.6665 -4.5350 0.8921 13 8 3.8107 -5.2388 0.3184 14 6 4.5494 -5.1623 2.5984 15 1 4.1866 -4.5952 3.4429 16 6 4.9349 -6.4756 2.7643 17 7 5.3762 -7.1663 1.7357 18 14 4.8317 -7.2736 4.4501 19 1 3.4975 -7.9037 4.6186 20 1 5.8878 -8.3103 4.5726 21 1 5.0275 -6.2411 5.4993 22 6 5.6182 -2.3769 -0.4608 23 6 6.3597 -1.3104 0.3547 24 6 5.7867 0.0567 -0.0262 25 1 -0.3634 0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6604 2.1336 0.0032 29 1 4.1178 2.1306 -0.0040 30 1 1.2567 -2.8102 1.0272 31 1 0.4864 -2.3622 -0.5137 32 1 2.0250 -3.2572 -0.5150 33 1 4.7763 -2.5203 2.0312 34 1 3.1156 -3.0533 1.6757 35 1 2.8759 -5.2654 0.5640 36 1 5.6471 -8.0904 1.8523 37 1 6.0976 -3.3454 -0.3179 38 1 5.6378 -2.1088 -1.5172 39 1 7.4241 -1.3419 0.1217 40 1 6.2100 -1.4891 1.4195 41 1 6.1271 0.3269 -1.0258 42 1 6.1294 0.8055 0.6879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930669912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = -50.444066 kcal Electronic energy + Delta-G solvation = -22217.044761 eV Core-core repulsion = 19160.383574 eV Total energy + Delta-G solvation = -3056.661187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72164 -38.72480 -37.22625 -35.30411 -34.21232 -32.73416 -32.08808 -30.18444 -28.50539 -27.60728 -26.44186 -25.17153 -23.39307 -22.48591 -21.50003 -19.96579 -19.07857 -17.26459 -17.15421 -16.68481 -16.57558 -16.27793 -15.62483 -15.31238 -15.19828 -14.84129 -14.51591 -14.30957 -14.26443 -13.88590 -13.58727 -13.51166 -13.29517 -13.09849 -12.90054 -12.83173 -12.77844 -12.43834 -12.29858 -12.09364 -12.05771 -11.83322 -11.58445 -11.56752 -10.94085 -10.67974 -10.33156 -9.81249 -9.21025 -8.64137 -8.13701 -6.39701 0.48957 0.53422 1.39977 1.40396 1.51054 2.37569 2.75807 3.04108 3.12835 3.82081 3.84867 3.96862 4.06701 4.13707 4.25412 4.28573 4.37822 4.44300 4.49638 4.52988 4.67296 4.73550 4.77788 4.82627 4.84739 4.89089 4.91604 4.96549 5.01266 5.08231 5.16699 5.25856 5.28959 5.44692 5.55970 5.63098 5.64602 5.74355 5.82927 5.99261 6.10264 6.21996 6.66131 6.72380 7.34178 7.59514 8.90469 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.005481 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.797437 B = 5107.504184 C = 5766.102958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.095 3.905 7 C -0.109 4.109 8 C -0.105 4.105 9 N -0.492 5.492 10 C 0.059 3.941 11 C 0.241 3.759 12 H 0.026 0.974 13 O -0.567 6.567 14 C -0.588 4.588 15 H 0.055 0.945 16 C 0.031 3.969 17 N -0.897 5.897 18 Si 0.957 3.043 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.054 3.946 23 C -0.153 4.153 24 C -0.068 4.068 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.351 0.649 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 16.991 -3.321 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.158 4.158 4 C -0.129 4.129 5 C -0.146 4.146 6 C -0.002 4.002 7 C -0.111 4.111 8 C -0.162 4.162 9 N -0.207 5.207 10 C -0.066 4.066 11 C 0.183 3.817 12 H 0.044 0.956 13 O -0.370 6.370 14 C -0.626 4.626 15 H 0.073 0.927 16 C -0.172 4.172 17 N -0.533 5.533 18 Si 0.782 3.218 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.074 4.074 23 C -0.192 4.192 24 C -0.105 4.105 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.195 0.805 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.044 16.387 -4.013 17.609 hybrid contribution 0.243 -0.399 1.583 1.650 sum -4.801 15.988 -2.430 16.869 Atomic orbital electron populations 1.20823 0.89462 1.03405 1.02951 1.19930 0.97296 0.92023 0.99577 1.21186 0.94119 0.97952 1.02583 1.21173 0.94567 0.97111 1.00055 1.20210 0.96794 0.92916 1.04722 1.18754 0.93082 0.88358 1.00019 1.19908 0.92012 0.96194 1.02995 1.20723 0.99581 0.94367 1.01509 1.58448 1.17114 1.19057 1.26077 1.22744 1.00767 0.96437 0.86676 1.19182 0.89879 0.85086 0.87531 0.95608 1.86516 1.20777 1.78026 1.51642 1.21977 1.46572 0.98111 0.95985 0.92700 1.25826 0.93418 0.97874 1.00091 1.70214 1.41873 1.09545 1.31718 0.85599 0.78061 0.78213 0.79943 1.19720 1.20790 1.19150 1.22195 0.86821 0.99118 0.99234 1.22124 1.01274 0.95967 0.99812 1.20491 0.90037 0.97045 1.02908 0.90339 0.91462 0.90088 0.83698 0.84029 0.92311 0.90371 0.91923 0.95704 0.91221 0.80510 0.92945 0.91730 0.90279 0.89136 0.93219 0.89414 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.18 71.24 0.65 -1.43 16 2 C -0.09 -2.26 5.87 -19.95 -0.12 -2.38 16 3 C -0.14 -3.22 9.71 22.25 0.22 -3.01 16 4 C -0.11 -2.68 9.63 22.32 0.21 -2.46 16 5 C -0.14 -4.21 5.74 -19.71 -0.11 -4.32 16 6 C 0.09 3.25 5.12 38.30 0.20 3.44 16 7 C -0.11 -3.45 5.69 -19.63 -0.11 -3.57 16 8 C -0.11 -3.24 7.69 71.23 0.55 -2.69 16 9 N -0.49 -18.88 3.39 -695.85 -2.36 -21.23 16 10 C 0.06 2.53 4.01 86.30 0.35 2.88 16 11 C 0.24 12.41 2.66 29.85 0.08 12.49 16 12 H 0.03 1.50 6.24 -2.39 -0.01 1.48 16 13 O -0.57 -29.89 12.60 -148.98 -1.88 -31.76 16 14 C -0.59 -32.47 8.76 25.60 0.22 -32.25 16 15 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 16 C 0.03 1.72 5.40 84.65 0.46 2.17 16 17 N -0.90 -53.57 12.84 21.45 0.28 -53.29 16 18 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.05 1.93 5.68 86.52 0.49 2.42 16 23 C -0.15 -4.56 6.03 30.74 0.19 -4.38 16 24 C -0.07 -1.70 5.81 29.89 0.17 -1.53 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.30 6.68 -2.39 -0.02 1.28 16 27 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 28 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.06 1.83 7.22 -2.39 -0.02 1.81 16 31 H 0.08 1.98 6.67 -2.38 -0.02 1.97 16 32 H 0.06 2.24 7.27 -2.39 -0.02 2.23 16 33 H 0.02 1.09 6.41 -2.39 -0.02 1.08 16 34 H 0.07 2.96 5.80 -2.39 -0.01 2.94 16 35 H 0.35 16.71 9.04 -74.06 -0.67 16.04 16 36 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.06 2.68 5.88 -2.38 -0.01 2.66 16 38 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 39 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.05 1.68 6.39 -2.39 -0.02 1.67 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -65.22 325.18 1.87 -63.36 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.36 Total: 32.13 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.44 Total: -34.60 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.08 Total: -74.52 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.88 Total: -31.76 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -65.22 1.87 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930669912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.912 kcal (2) G-P(sol) polarization free energy of solvation -65.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds