Wall clock time and date at job start Mon Mar 30 2020 01:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 120.00035 * 2 1 4 4 C 1.38217 * 119.99714 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00519 * 359.95518 * 4 3 2 6 6 C 1.38213 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99736 * 179.97438 * 6 5 4 8 8 N 1.46894 * 112.85013 * 310.25464 * 7 6 5 9 9 C 1.46898 * 111.00075 * 305.41884 * 8 7 6 10 10 C 1.53000 * 109.47363 * 186.13318 * 9 8 7 11 11 H 1.09006 * 109.47336 * 59.99870 * 10 9 8 12 12 O 1.42908 * 109.46991 * 300.00196 * 10 9 8 13 13 C 1.50696 * 109.47507 * 180.02562 * 10 9 8 14 14 H 1.08007 * 119.99996 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00511 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00423 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99571 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47498 * 90.00221 * 17 15 13 19 19 H 1.48513 * 109.47029 * 210.00050 * 17 15 13 20 20 H 1.48497 * 109.47159 * 329.99639 * 17 15 13 21 21 C 1.53786 * 113.61388 * 81.45404 * 7 6 5 22 22 C 1.53783 * 87.08090 * 139.98012 * 21 7 6 23 23 C 1.53784 * 87.17249 * 334.52496 * 22 21 7 24 24 C 1.38211 * 120.00119 * 180.22982 * 2 1 3 25 25 H 1.09007 * 109.46804 * 90.00131 * 1 2 3 26 26 H 1.08998 * 109.47162 * 209.99695 * 1 2 3 27 27 H 1.09001 * 109.47192 * 330.00460 * 1 2 3 28 28 H 1.07994 * 120.00175 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99938 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.00164 * 180.02562 * 5 4 3 31 31 H 1.00902 * 111.00090 * 181.46551 * 8 7 6 32 32 H 1.08995 * 109.47173 * 306.12945 * 9 8 7 33 33 H 1.09000 * 109.47114 * 66.13400 * 9 8 7 34 34 H 0.96700 * 113.99593 * 299.99937 * 12 10 9 35 35 H 0.96995 * 119.99745 * 179.97438 * 16 15 13 36 36 H 1.08996 * 113.61366 * 25.42920 * 21 7 6 37 37 H 1.08996 * 113.68589 * 254.53495 * 21 7 6 38 38 H 1.08997 * 113.61348 * 89.11231 * 22 21 7 39 39 H 1.08994 * 113.61274 * 219.93575 * 22 21 7 40 40 H 1.09000 * 113.61404 * 140.02887 * 23 22 21 41 41 H 1.09002 * 113.61177 * 270.92319 * 23 22 21 42 42 H 1.07997 * 120.00359 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5806 -1.1970 0.0003 7 6 4.3342 -2.5021 0.0001 8 7 5.3765 -2.5588 -1.0334 9 6 4.8175 -2.2717 -2.3612 10 6 5.8946 -2.4890 -3.4259 11 1 6.2361 -3.5236 -3.3914 12 8 6.9968 -1.6150 -3.1738 13 6 5.3214 -2.1939 -4.7879 14 1 4.2916 -1.8829 -4.8847 15 6 6.1114 -2.3210 -5.9108 16 7 5.6110 -2.0639 -7.0995 17 14 7.8926 -2.8583 -5.7435 18 1 7.9727 -4.3389 -5.8235 19 1 8.6955 -2.2591 -6.8398 20 1 8.4259 -2.4037 -4.4342 21 6 4.8241 -2.9307 1.3934 22 6 4.4314 -4.3655 1.0036 23 6 3.4206 -3.7422 0.0265 24 6 2.1980 -1.1969 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3517 0.0000 -0.0001 31 1 5.8466 -3.4516 -1.0243 32 1 3.9770 -2.9384 -2.5534 33 1 4.4761 -1.2372 -2.3957 34 1 6.7656 -0.6761 -3.1892 35 1 6.1670 -2.1529 -7.8893 36 1 4.2293 -2.5218 2.2102 37 1 5.8955 -2.7962 1.5413 38 1 5.2311 -4.9184 0.5108 39 1 3.9663 -4.9264 1.8142 40 1 3.3599 -4.2621 -0.9296 41 1 2.4428 -3.5549 0.4704 42 1 1.6581 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:40 Heat of formation + Delta-G solvation = -25.889700 kcal Electronic energy + Delta-G solvation = -21743.933088 eV Core-core repulsion = 18688.336658 eV Total energy + Delta-G solvation = -3055.596430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45655 -39.20939 -38.04610 -34.46571 -34.28496 -33.47055 -31.89152 -30.03679 -27.88661 -26.77505 -26.29656 -25.06567 -23.07669 -22.35112 -21.59043 -19.76959 -19.13530 -17.74471 -16.99176 -16.87127 -16.51015 -16.26806 -15.95063 -15.72542 -15.23515 -14.89725 -14.60387 -14.45053 -14.34398 -13.92956 -13.91068 -13.47965 -13.22039 -13.05392 -12.93628 -12.88977 -12.58320 -12.37624 -12.29523 -11.95017 -11.84623 -11.54480 -11.38247 -11.14248 -11.09486 -10.80982 -10.10835 -9.64428 -9.38556 -9.25553 -8.36039 -6.51213 0.50317 0.54687 1.39772 1.45430 1.76281 2.43931 2.87078 3.02109 3.13161 3.60737 3.74342 3.80393 3.97540 4.05906 4.08252 4.10264 4.31638 4.36573 4.43578 4.53211 4.54160 4.69144 4.78919 4.80895 4.83080 4.85405 4.98074 5.00240 5.04656 5.13369 5.18530 5.22466 5.32617 5.35707 5.45634 5.52540 5.63464 5.72985 5.77770 6.08052 6.17518 6.20694 6.51077 6.63014 7.20034 7.34800 8.78449 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.005494 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.606957 B = 5095.167052 C = 5821.282373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.066 4.066 7 C 0.124 3.876 8 N -0.650 5.650 9 C 0.071 3.929 10 C 0.206 3.794 11 H 0.050 0.950 12 O -0.571 6.571 13 C -0.566 4.566 14 H 0.030 0.970 15 C 0.028 3.972 16 N -0.941 5.941 17 Si 0.942 3.058 18 H -0.284 1.284 19 H -0.298 1.298 20 H -0.204 1.204 21 C -0.114 4.114 22 C -0.132 4.132 23 C -0.176 4.176 24 C -0.134 4.134 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.344 0.656 32 H 0.016 0.984 33 H 0.054 0.946 34 H 0.364 0.636 35 H 0.267 0.733 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 1.287 20.172 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.066 4.066 7 C 0.032 3.968 8 N -0.280 5.280 9 C -0.059 4.059 10 C 0.148 3.852 11 H 0.068 0.932 12 O -0.377 6.377 13 C -0.604 4.604 14 H 0.049 0.951 15 C -0.171 4.171 16 N -0.580 5.580 17 Si 0.766 3.234 18 H -0.211 1.211 19 H -0.225 1.225 20 H -0.125 1.125 21 C -0.152 4.152 22 C -0.169 4.169 23 C -0.215 4.215 24 C -0.152 4.152 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.211 0.789 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.600 1.375 20.165 20.974 hybrid contribution -0.331 -0.491 -1.216 1.353 sum -5.931 0.884 18.949 19.875 Atomic orbital electron populations 1.20807 0.89550 1.03719 1.02633 1.20211 0.97395 0.92923 0.99360 1.21299 0.94314 0.98252 1.01353 1.21403 0.94820 0.98357 0.99926 1.21081 1.00266 0.92185 0.99849 1.19622 0.93372 0.94331 0.99286 1.21081 0.91019 0.90804 0.93879 1.60345 1.26798 1.37831 1.03014 1.22128 0.95909 0.99646 0.88166 1.19524 0.84489 0.90741 0.90433 0.93177 1.86576 1.37056 1.19804 1.94276 1.21796 0.98234 1.47982 0.92404 0.95148 1.25881 1.03699 0.93258 0.94301 1.70091 1.38979 1.49701 0.99238 0.85940 0.79470 0.77603 0.80385 1.21057 1.22475 1.12529 1.22984 1.01921 0.95750 0.94558 1.22784 0.98643 0.96261 0.99252 1.23839 0.99757 0.97896 1.00055 1.21181 0.93555 0.98398 1.02091 0.91291 0.90781 0.90125 0.84378 0.84703 0.86331 0.83702 0.96591 0.92705 0.78854 0.92441 0.88961 0.90670 0.90138 0.89525 0.92902 0.88450 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.01 71.23 0.71 -1.25 16 2 C -0.10 -2.39 5.88 -19.87 -0.12 -2.50 16 3 C -0.13 -3.20 9.70 22.27 0.22 -2.98 16 4 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 5 C -0.12 -3.34 8.97 22.27 0.20 -3.14 16 6 C -0.07 -1.87 3.94 -19.87 -0.08 -1.95 16 7 C 0.12 3.35 0.94 3.40 0.00 3.35 16 8 N -0.65 -20.93 6.11 -470.83 -2.88 -23.81 16 9 C 0.07 2.82 4.79 86.30 0.41 3.24 16 10 C 0.21 9.56 2.45 29.85 0.07 9.63 16 11 H 0.05 2.34 7.57 -2.38 -0.02 2.32 16 12 O -0.57 -25.36 10.00 -148.98 -1.49 -26.85 16 13 C -0.57 -32.34 9.34 25.60 0.24 -32.10 16 14 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 15 C 0.03 1.65 5.47 84.65 0.46 2.11 16 16 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 17 Si 0.94 45.56 26.99 68.60 1.85 47.41 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.20 -9.38 5.30 99.48 0.53 -8.85 16 21 C -0.11 -2.49 7.40 31.12 0.23 -2.26 16 22 C -0.13 -2.63 7.72 31.12 0.24 -2.39 16 23 C -0.18 -4.24 6.60 31.21 0.21 -4.03 16 24 C -0.13 -3.55 8.85 22.27 0.20 -3.35 16 25 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.07 1.14 8.09 -2.39 -0.02 1.13 16 27 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 28 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.34 10.64 7.80 -89.69 -0.70 9.94 16 32 H 0.02 0.67 7.25 -2.39 -0.02 0.65 16 33 H 0.05 2.35 6.97 -2.39 -0.02 2.33 16 34 H 0.36 14.98 9.04 -74.06 -0.67 14.31 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.61 7.70 -2.39 -0.02 1.59 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.45 7.45 -2.39 -0.02 1.43 16 41 H 0.10 2.08 6.00 -2.39 -0.01 2.07 16 42 H 0.13 3.06 5.79 -2.91 -0.02 3.04 16 Total: -1.00 -66.78 333.42 0.48 -66.30 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.53 Total: 36.54 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.22 Total: -40.67 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.58 Total: -82.73 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.49 Total: -26.85 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.85 Total: 47.41 kcal Total: -66.78 0.48 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.411 kcal (2) G-P(sol) polarization free energy of solvation -66.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds