Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 119.99989 * 2 1 4 4 C 1.38231 * 119.99796 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99834 * 179.97438 * 5 4 3 7 7 N 1.46900 * 112.85156 * 346.03467 * 6 5 4 8 8 C 1.46907 * 111.00002 * 289.33961 * 7 6 5 9 9 C 1.52998 * 109.47099 * 175.68318 * 8 7 6 10 10 H 1.09007 * 109.47081 * 60.00168 * 9 8 7 11 11 O 1.42894 * 109.47236 * 300.00251 * 9 8 7 12 12 C 1.50700 * 109.47216 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99928 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00332 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99627 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00412 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47353 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.47141 * 300.00175 * 16 14 12 19 19 H 1.48503 * 109.46924 * 59.99759 * 16 14 12 20 20 C 1.53780 * 113.69211 * 117.30515 * 6 5 4 21 21 C 1.53784 * 87.08190 * 139.98950 * 20 6 5 22 22 C 1.53782 * 87.08296 * 334.56824 * 21 20 6 23 23 C 1.38233 * 119.99891 * 0.25470 * 5 4 3 24 24 C 1.38229 * 119.99549 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47151 * 89.99654 * 1 2 3 26 26 H 1.08999 * 109.47543 * 210.00481 * 1 2 3 27 27 H 1.09010 * 109.47135 * 330.00405 * 1 2 3 28 28 H 1.07996 * 119.99960 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00125 * 179.97438 * 4 3 2 30 30 H 1.00894 * 110.99932 * 53.29103 * 7 6 5 31 31 H 1.08998 * 109.46745 * 55.68437 * 8 7 6 32 32 H 1.08997 * 109.47076 * 295.68655 * 8 7 6 33 33 H 0.96702 * 113.99912 * 299.99730 * 11 9 8 34 34 H 0.96991 * 120.00446 * 359.97438 * 15 14 12 35 35 H 1.09000 * 113.61407 * 254.53877 * 20 6 5 36 36 H 1.08997 * 113.60991 * 25.43938 * 20 6 5 37 37 H 1.08996 * 113.61502 * 220.02012 * 21 20 6 38 38 H 1.09001 * 113.68834 * 89.12794 * 21 20 6 39 39 H 1.09003 * 113.61269 * 270.88592 * 22 21 20 40 40 H 1.08998 * 113.69533 * 139.98766 * 22 21 20 41 41 H 1.07999 * 119.99921 * 179.73414 * 23 5 4 42 42 H 1.08001 * 120.00619 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 7 6.3491 1.3136 -0.3262 8 6 6.1350 1.6432 -1.7417 9 6 6.6451 3.0589 -2.0184 10 1 7.7096 3.1127 -1.7898 11 8 5.9344 3.9898 -1.1997 12 6 6.4261 3.3969 -3.4706 13 1 5.9684 2.6744 -4.1301 14 6 6.8099 4.6284 -3.9573 15 7 7.3677 5.5080 -3.1543 16 14 6.5378 5.0476 -5.7572 17 1 7.0329 6.4216 -6.0258 18 1 7.2758 4.0797 -6.6080 19 1 5.0876 4.9749 -6.0686 20 6 6.3966 -0.6461 1.2518 21 6 7.4423 -1.2738 0.3151 22 6 6.3947 -1.1566 -0.8045 23 6 3.5805 -1.1972 -0.0053 24 6 2.1981 -1.1972 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.6582 2.1324 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 5.9707 2.0313 0.2735 31 1 5.0707 1.5894 -1.9702 32 1 6.6771 0.9331 -2.3661 33 1 4.9792 3.9963 -1.3499 34 1 7.5087 5.2906 -2.2197 35 1 6.8158 0.0749 1.9536 36 1 5.7461 -1.3769 1.7322 37 1 7.6954 -2.3028 0.5704 38 1 8.3211 -0.6483 0.1581 39 1 5.7437 -2.0271 -0.8862 40 1 6.8110 -0.8480 -1.7634 41 1 4.1204 -2.1325 -0.0097 42 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930827838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = -17.587175 kcal Electronic energy + Delta-G solvation = -21720.915760 eV Core-core repulsion = 18665.679354 eV Total energy + Delta-G solvation = -3055.236406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41240 -38.12754 -36.36708 -33.25905 -32.35490 -32.08483 -30.71053 -28.19764 -26.95425 -25.67258 -24.13086 -23.22181 -22.32141 -20.93720 -20.79538 -18.53037 -17.26143 -17.10314 -15.59027 -15.40074 -14.99986 -14.76948 -14.32182 -14.10399 -13.85555 -13.76840 -13.48835 -13.33859 -13.10766 -12.56819 -12.33498 -12.25229 -12.10290 -11.76841 -11.44839 -11.35350 -11.27079 -10.94944 -10.77113 -10.60567 -10.23460 -10.12199 -10.08449 -10.02826 -9.22936 -8.83558 -8.46287 -8.35850 -8.06592 -7.95379 -6.34276 -4.17543 1.39192 1.48465 3.42468 3.43600 3.62952 3.78017 4.39602 4.56331 4.74063 4.78138 4.90229 4.90841 5.00176 5.06964 5.10001 5.31786 5.35393 5.43788 5.49744 5.57626 5.72063 5.72883 5.78216 5.87593 5.95356 6.06485 6.08397 6.13097 6.18732 6.22237 6.25838 6.37650 6.48610 6.54376 6.64197 6.72625 6.81230 7.08914 7.40662 7.64179 7.83892 8.07528 8.36562 8.87316 9.07240 9.67999 11.06031 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.005398 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.476591 B = 5186.168029 C = 6242.460931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.110 4.110 5 C -0.094 4.094 6 C 0.124 3.876 7 N -0.659 5.659 8 C 0.042 3.958 9 C 0.215 3.785 10 H 0.056 0.944 11 O -0.582 6.582 12 C -0.649 4.649 13 H 0.047 0.953 14 C 0.036 3.964 15 N -0.892 5.892 16 Si 1.065 2.935 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.289 1.289 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.346 0.654 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.285 0.715 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -14.106 8.008 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.129 4.129 5 C -0.096 4.096 6 C 0.032 3.968 7 N -0.290 5.290 8 C -0.087 4.087 9 C 0.157 3.843 10 H 0.074 0.926 11 O -0.386 6.386 12 C -0.687 4.687 13 H 0.066 0.934 14 C -0.173 4.173 15 N -0.526 5.526 16 Si 0.894 3.106 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.215 1.215 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.169 4.169 23 C -0.131 4.131 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.138 0.862 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.828 -13.014 7.017 16.729 hybrid contribution -1.808 -1.203 0.724 2.289 sum -9.636 -14.217 7.740 18.838 Atomic orbital electron populations 1.20763 0.91501 1.02420 1.02159 1.19874 0.95852 0.93288 1.00665 1.21012 0.94145 0.97478 1.00713 1.21133 0.94248 0.98163 0.99309 1.20591 0.96837 0.93215 0.98969 1.21022 0.86629 0.91724 0.97438 1.60576 1.60409 1.01729 1.06323 1.22721 0.98661 1.00508 0.86814 1.19605 0.92519 0.82225 0.89906 0.92586 1.86506 1.21672 1.64796 1.65669 1.22391 1.47517 1.03810 0.94968 0.93432 1.25754 0.92967 0.92737 1.05883 1.70629 1.37441 1.36301 1.08255 0.83620 0.76262 0.76267 0.74479 1.20721 1.21440 1.21518 1.22965 0.97869 0.99274 0.95747 1.22676 0.97517 1.00032 0.96188 1.23129 0.98073 0.96840 0.98826 1.20946 0.93879 0.97585 1.00731 1.20952 0.94142 0.97254 1.01766 0.91360 0.91854 0.91696 0.86199 0.85800 0.83364 0.95612 0.91477 0.80691 0.90358 0.90948 0.90368 0.92220 0.89398 0.90160 0.90631 0.86213 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.10 -1.20 5.88 -104.62 -0.62 -1.81 16 3 C -0.12 -1.58 9.70 -39.59 -0.38 -1.97 16 4 C -0.11 -1.68 8.05 -39.58 -0.32 -2.00 16 5 C -0.09 -1.38 4.87 -104.62 -0.51 -1.89 16 6 C 0.12 1.85 0.95 -131.94 -0.13 1.73 16 7 N -0.66 -11.66 6.06 -100.31 -0.61 -12.27 16 8 C 0.04 0.86 4.53 -3.82 -0.02 0.84 16 9 C 0.21 5.36 2.69 -27.88 -0.08 5.29 16 10 H 0.06 1.56 8.01 -51.93 -0.42 1.14 16 11 O -0.58 -14.19 11.28 -35.23 -0.40 -14.59 16 12 C -0.65 -18.08 8.76 -34.44 -0.30 -18.38 16 13 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 14 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 15 N -0.89 -27.26 13.53 55.43 0.75 -26.51 16 16 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.12 -1.55 7.36 -25.92 -0.19 -1.74 16 21 C -0.13 -1.60 7.99 -25.92 -0.21 -1.81 16 22 C -0.13 -1.82 6.94 -25.91 -0.18 -2.00 16 23 C -0.11 -1.47 8.77 -39.58 -0.35 -1.82 16 24 C -0.12 -1.49 9.70 -39.58 -0.38 -1.88 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.06 0.56 8.09 -51.92 -0.42 0.14 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 1.99 6.01 -52.49 -0.32 1.68 16 30 H 0.35 6.24 6.43 -39.29 -0.25 5.99 16 31 H 0.03 0.54 6.46 -51.93 -0.34 0.21 16 32 H 0.07 1.43 6.52 -51.93 -0.34 1.09 16 33 H 0.35 7.70 9.04 45.56 0.41 8.11 16 34 H 0.28 8.85 6.47 -40.82 -0.26 8.59 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.90 7.83 -51.93 -0.41 0.49 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 40 H 0.08 1.18 6.42 -51.93 -0.33 0.85 16 41 H 0.12 1.34 6.48 -52.49 -0.34 1.00 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -30.38 332.16 -9.21 -39.60 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -5.49 Total: 15.92 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.39 Total: -27.21 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.14 Total: -38.79 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.40 Total: -14.59 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.38 -9.21 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930827838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.012 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds