Wall clock time and date at job start Mon Mar 30 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38234 * 119.99989 * 2 1 4 4 C 1.38231 * 119.99796 * 179.97438 * 3 2 1 5 5 C 1.38240 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99834 * 179.97438 * 5 4 3 7 7 N 1.46900 * 112.85156 * 346.03467 * 6 5 4 8 8 C 1.46907 * 111.00002 * 289.33961 * 7 6 5 9 9 C 1.52998 * 109.47099 * 175.68318 * 8 7 6 10 10 H 1.09007 * 109.47081 * 60.00168 * 9 8 7 11 11 O 1.42894 * 109.47236 * 300.00251 * 9 8 7 12 12 C 1.50700 * 109.47216 * 179.97438 * 9 8 7 13 13 H 1.08001 * 119.99928 * 0.02562 * 12 9 8 14 14 C 1.37872 * 120.00332 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99627 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00412 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.47353 * 179.97438 * 16 14 12 18 18 H 1.48505 * 109.47141 * 300.00175 * 16 14 12 19 19 H 1.48503 * 109.46924 * 59.99759 * 16 14 12 20 20 C 1.53780 * 113.69211 * 117.30515 * 6 5 4 21 21 C 1.53784 * 87.08190 * 139.98950 * 20 6 5 22 22 C 1.53782 * 87.08296 * 334.56824 * 21 20 6 23 23 C 1.38233 * 119.99891 * 0.25470 * 5 4 3 24 24 C 1.38229 * 119.99549 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47151 * 89.99654 * 1 2 3 26 26 H 1.08999 * 109.47543 * 210.00481 * 1 2 3 27 27 H 1.09010 * 109.47135 * 330.00405 * 1 2 3 28 28 H 1.07996 * 119.99960 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00125 * 179.97438 * 4 3 2 30 30 H 1.00894 * 110.99932 * 53.29103 * 7 6 5 31 31 H 1.08998 * 109.46745 * 55.68437 * 8 7 6 32 32 H 1.08997 * 109.47076 * 295.68655 * 8 7 6 33 33 H 0.96702 * 113.99912 * 299.99730 * 11 9 8 34 34 H 0.96991 * 120.00446 * 359.97438 * 15 14 12 35 35 H 1.09000 * 113.61407 * 254.53877 * 20 6 5 36 36 H 1.08997 * 113.60991 * 25.43938 * 20 6 5 37 37 H 1.08996 * 113.61502 * 220.02012 * 21 20 6 38 38 H 1.09001 * 113.68834 * 89.12794 * 21 20 6 39 39 H 1.09003 * 113.61269 * 270.88592 * 22 21 20 40 40 H 1.08998 * 113.69533 * 139.98766 * 22 21 20 41 41 H 1.07999 * 119.99921 * 179.73414 * 23 5 4 42 42 H 1.08001 * 120.00619 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 7 6.3491 1.3136 -0.3262 8 6 6.1350 1.6432 -1.7417 9 6 6.6451 3.0589 -2.0184 10 1 7.7096 3.1127 -1.7898 11 8 5.9344 3.9898 -1.1997 12 6 6.4261 3.3969 -3.4706 13 1 5.9684 2.6744 -4.1301 14 6 6.8099 4.6284 -3.9573 15 7 7.3677 5.5080 -3.1543 16 14 6.5378 5.0476 -5.7572 17 1 7.0329 6.4216 -6.0258 18 1 7.2758 4.0797 -6.6080 19 1 5.0876 4.9749 -6.0686 20 6 6.3966 -0.6461 1.2518 21 6 7.4423 -1.2738 0.3151 22 6 6.3947 -1.1566 -0.8045 23 6 3.5805 -1.1972 -0.0053 24 6 2.1981 -1.1972 -0.0005 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5138 28 1 1.6582 2.1324 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 5.9707 2.0313 0.2735 31 1 5.0707 1.5894 -1.9702 32 1 6.6771 0.9331 -2.3661 33 1 4.9792 3.9963 -1.3499 34 1 7.5087 5.2906 -2.2197 35 1 6.8158 0.0749 1.9536 36 1 5.7461 -1.3769 1.7322 37 1 7.6954 -2.3028 0.5704 38 1 8.3211 -0.6483 0.1581 39 1 5.7437 -2.0271 -0.8862 40 1 6.8110 -0.8480 -1.7634 41 1 4.1204 -2.1325 -0.0097 42 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930827838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:43 Heat of formation + Delta-G solvation = -37.153963 kcal Electronic energy + Delta-G solvation = -21721.764239 eV Core-core repulsion = 18665.679354 eV Total energy + Delta-G solvation = -3056.084885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53699 -39.20199 -38.26580 -34.71534 -34.24071 -33.41211 -31.76118 -29.83675 -28.13582 -26.85423 -25.79476 -24.53830 -23.39501 -22.68333 -21.93051 -19.82708 -19.19641 -18.30480 -17.23323 -16.63623 -16.27066 -15.99253 -15.78276 -15.70052 -15.33200 -15.03376 -14.68567 -14.52278 -14.41824 -14.13648 -13.73086 -13.62679 -13.13052 -13.07412 -12.88010 -12.60428 -12.44763 -12.39273 -12.21970 -11.96316 -11.94196 -11.69479 -11.33254 -11.22382 -11.11966 -10.65397 -10.15253 -9.86254 -9.43748 -9.33035 -8.63824 -6.48597 0.38116 0.46260 1.51057 1.58566 1.78501 2.53659 2.76650 3.08985 3.15744 3.66362 3.72585 3.83737 3.90441 3.97299 4.02171 4.06661 4.11406 4.32339 4.40331 4.43429 4.50113 4.58312 4.72281 4.79383 4.81328 4.85580 4.93453 4.95557 5.06593 5.10675 5.14007 5.26277 5.28733 5.40140 5.45591 5.50049 5.65384 5.67999 5.79243 6.07039 6.10501 6.20268 6.41707 6.56030 7.09631 7.47190 8.74216 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.005398 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.476591 B = 5186.168029 C = 6242.460931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.134 4.134 5 C -0.108 4.108 6 C 0.113 3.887 7 N -0.661 5.661 8 C 0.069 3.931 9 C 0.217 3.783 10 H 0.021 0.979 11 O -0.587 6.587 12 C -0.659 4.659 13 H 0.047 0.953 14 C -0.015 4.015 15 N -0.919 5.919 16 Si 1.114 2.886 17 H -0.284 1.284 18 H -0.271 1.271 19 H -0.270 1.270 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.123 4.123 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.342 0.658 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.359 0.641 34 H 0.268 0.732 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 -16.505 7.860 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.153 4.153 5 C -0.111 4.111 6 C 0.021 3.979 7 N -0.292 5.292 8 C -0.060 4.060 9 C 0.160 3.840 10 H 0.039 0.961 11 O -0.392 6.392 12 C -0.697 4.697 13 H 0.065 0.935 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.936 3.064 17 H -0.209 1.209 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.168 4.168 23 C -0.133 4.133 24 C -0.141 4.141 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.121 0.879 30 H 0.162 0.838 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.204 0.796 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.159 0.841 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.626 -15.440 6.887 19.455 hybrid contribution -1.298 -0.497 0.840 1.624 sum -10.924 -15.937 7.727 20.809 Atomic orbital electron populations 1.20816 0.89267 1.03692 1.02902 1.20260 0.97568 0.92816 0.99325 1.21198 0.93711 0.98728 1.01182 1.21110 0.95120 0.97795 1.01257 1.20584 0.96439 0.93830 1.00199 1.21195 0.87301 0.90198 0.99219 1.60507 1.61114 1.03271 1.04347 1.22207 0.97713 0.97339 0.88777 1.19395 0.90991 0.84768 0.88837 0.96119 1.86445 1.22458 1.64976 1.65320 1.22768 1.46777 1.03791 0.96376 0.93512 1.27276 0.91951 0.92884 1.09596 1.70773 1.39795 1.37206 1.07656 0.82990 0.77403 0.76233 0.69791 1.20905 1.19577 1.19536 1.22968 0.97866 0.99226 0.94810 1.22615 0.96460 1.01278 0.95412 1.23198 0.98711 0.97103 0.97791 1.21198 0.94538 0.97549 1.00031 1.21346 0.93998 0.98370 1.00359 0.90736 0.89952 0.91159 0.85615 0.87872 0.83828 0.96025 0.92293 0.79575 0.92184 0.91743 0.88059 0.89380 0.91398 0.87728 0.92982 0.84057 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 2 C -0.10 -2.25 5.88 -19.87 -0.12 -2.36 16 3 C -0.13 -3.50 9.70 22.27 0.22 -3.29 16 4 C -0.13 -4.14 8.05 22.27 0.18 -3.96 16 5 C -0.11 -3.09 4.87 -19.87 -0.10 -3.19 16 6 C 0.11 3.30 0.95 3.31 0.00 3.30 16 7 N -0.66 -24.18 6.06 -471.26 -2.86 -27.04 16 8 C 0.07 2.95 4.53 86.30 0.39 3.34 16 9 C 0.22 11.33 2.69 29.85 0.08 11.41 16 10 H 0.02 1.23 8.01 -2.38 -0.02 1.21 16 11 O -0.59 -29.86 11.28 -148.98 -1.68 -31.54 16 12 C -0.66 -37.49 8.76 25.60 0.22 -37.27 16 13 H 0.05 2.62 7.74 -2.91 -0.02 2.59 16 14 C -0.01 -0.86 5.40 84.65 0.46 -0.40 16 15 N -0.92 -57.62 13.53 21.45 0.29 -57.33 16 16 Si 1.11 50.48 29.90 68.60 2.05 52.53 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 20 C -0.11 -2.68 7.36 31.12 0.23 -2.45 16 21 C -0.12 -2.85 7.99 31.12 0.25 -2.60 16 22 C -0.13 -3.45 6.94 31.12 0.22 -3.23 16 23 C -0.11 -2.67 8.77 22.27 0.20 -2.48 16 24 C -0.12 -2.58 9.70 22.27 0.22 -2.37 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 28 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.10 3.50 6.01 -2.91 -0.02 3.49 16 30 H 0.34 12.93 6.43 -89.70 -0.58 12.36 16 31 H 0.02 0.94 6.46 -2.39 -0.02 0.92 16 32 H 0.06 2.60 6.52 -2.39 -0.02 2.58 16 33 H 0.36 16.51 9.04 -74.06 -0.67 15.84 16 34 H 0.27 17.35 6.47 -92.72 -0.60 16.75 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 2.00 7.83 -2.39 -0.02 1.98 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 39 H 0.10 2.23 6.17 -2.39 -0.01 2.21 16 40 H 0.05 1.62 6.42 -2.39 -0.02 1.60 16 41 H 0.14 2.60 6.48 -2.91 -0.02 2.58 16 42 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -66.91 332.16 0.91 -65.99 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -0.05 Total: 43.97 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 3.16 Total: -46.58 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.57 Total: -84.37 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.68 Total: -31.54 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -66.91 0.91 -65.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930827838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.839 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds