Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 115.55626 * 2 1 4 4 C 1.52990 * 117.49717 * 214.31501 * 2 1 3 5 5 C 1.52997 * 117.50251 * 145.68780 * 2 1 3 6 6 N 1.46896 * 117.50284 * 214.98013 * 5 2 1 7 7 C 1.46894 * 111.00060 * 226.25286 * 6 5 2 8 8 C 1.52999 * 109.47156 * 185.43131 * 7 6 5 9 9 H 1.09001 * 109.47129 * 59.99779 * 8 7 6 10 10 O 1.42901 * 109.47154 * 299.99831 * 8 7 6 11 11 C 1.50701 * 109.47335 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99586 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99896 * 180.02562 * 11 8 7 14 14 N 1.31505 * 120.00062 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99601 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47005 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47085 * 299.99731 * 15 13 11 18 18 H 1.48497 * 109.46916 * 60.00160 * 15 13 11 19 19 C 1.50703 * 117.51537 * 0.02562 * 5 2 1 20 20 C 1.38230 * 120.00485 * 105.77897 * 19 5 2 21 21 C 1.38231 * 120.00322 * 179.78506 * 20 19 5 22 22 C 1.38237 * 119.99699 * 0.43948 * 21 20 19 23 23 C 1.38230 * 120.00392 * 359.81163 * 22 21 20 24 24 C 1.38238 * 119.99570 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46937 * 279.88072 * 1 2 3 26 26 H 1.08996 * 109.47486 * 39.88752 * 1 2 3 27 27 H 1.09004 * 109.47247 * 159.89074 * 1 2 3 28 28 H 1.08999 * 109.46662 * 205.68729 * 3 2 1 29 29 H 1.09003 * 109.47336 * 325.69347 * 3 2 1 30 30 H 1.09000 * 109.46763 * 85.69122 * 3 2 1 31 31 H 1.09002 * 117.49674 * 145.02173 * 4 2 1 32 32 H 1.08996 * 117.50162 * 359.97438 * 4 2 1 33 33 H 1.00906 * 110.99526 * 350.20547 * 6 5 2 34 34 H 1.09001 * 109.47282 * 65.43004 * 7 6 5 35 35 H 1.08998 * 109.47344 * 305.42932 * 7 6 5 36 36 H 0.96700 * 114.00169 * 299.99951 * 10 8 7 37 37 H 0.96997 * 120.00448 * 0.02562 * 14 13 11 38 38 H 1.08009 * 119.99584 * 359.97438 * 20 19 5 39 39 H 1.07998 * 120.00347 * 180.26878 * 21 20 19 40 40 H 1.08006 * 119.99686 * 179.83278 * 22 21 20 41 41 H 1.07995 * 120.00413 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.99953 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2366 -1.1209 0.7650 6 7 3.4967 -0.7896 1.4432 7 6 4.5223 -1.8064 1.1746 8 6 5.7723 -1.5011 2.0022 9 1 5.5181 -1.5126 3.0621 10 8 6.2755 -0.2116 1.6470 11 6 6.8247 -2.5438 1.7262 12 1 6.6220 -3.3445 1.0304 13 6 8.0459 -2.4762 2.3628 14 7 8.2925 -1.5015 3.2104 15 14 9.3501 -3.7693 2.0211 16 1 10.5634 -3.4728 2.8243 17 1 8.8270 -5.1093 2.3897 18 1 9.6967 -3.7531 0.5772 19 6 1.3726 -2.1411 1.4605 20 6 1.2434 -3.4123 0.9332 21 6 0.4544 -4.3495 1.5736 22 6 -0.2127 -4.0125 2.7365 23 6 -0.0877 -2.7398 3.2611 24 6 0.7048 -1.8040 2.6230 25 1 -0.3633 0.1764 1.0125 26 1 -0.3634 0.7885 -0.6590 27 1 -0.3634 -0.9650 -0.3533 28 1 3.1823 1.3085 -0.4455 29 1 1.5810 2.0744 -0.5792 30 1 2.2772 1.7414 1.0248 31 1 3.1715 -0.8750 -1.2683 32 1 1.6112 -1.8586 -1.2680 33 1 3.8197 0.1287 1.1776 34 1 4.7765 -1.7949 0.1147 35 1 4.1385 -2.7900 1.4455 36 1 6.5226 -0.1286 0.7158 37 1 7.6152 -0.8303 3.3881 38 1 1.7615 -3.6743 0.0224 39 1 0.3570 -5.3440 1.1640 40 1 -0.8313 -4.7439 3.2354 41 1 -0.6086 -2.4767 4.1699 42 1 0.8021 -0.8094 3.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931080258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -15.456467 kcal Electronic energy + Delta-G solvation = -21674.116377 eV Core-core repulsion = 18618.972365 eV Total energy + Delta-G solvation = -3055.144011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.14503 -37.95168 -36.28149 -32.97253 -32.07892 -31.03971 -30.78965 -28.64465 -27.73699 -27.00060 -24.04506 -22.91145 -22.35153 -20.99214 -19.97941 -18.70990 -17.29683 -16.52851 -15.84361 -15.39849 -14.90033 -14.60229 -14.50493 -14.07323 -13.78216 -13.69323 -13.29360 -13.11931 -12.91027 -12.71186 -12.53037 -12.29766 -12.20983 -11.87403 -11.65825 -11.33814 -11.22326 -11.00124 -10.93166 -10.75577 -10.20123 -10.10248 -10.04182 -9.61933 -9.20257 -8.77819 -8.56649 -8.44815 -8.04463 -7.85172 -6.33048 -4.16216 1.47003 1.53934 3.42728 3.44443 3.63494 3.64630 3.89198 4.41272 4.53799 4.63205 4.78751 4.92186 5.06759 5.10849 5.13740 5.22253 5.36857 5.44283 5.60745 5.63571 5.70704 5.77779 5.82164 5.88318 5.91984 5.92854 5.98479 6.10937 6.12746 6.15394 6.22401 6.30387 6.31840 6.58927 6.61237 6.77135 6.79348 7.11657 7.41135 7.62071 7.84577 8.08864 8.37762 8.88457 9.11562 9.69638 11.07254 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.005170 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.712379 B = 5414.341222 C = 6322.451495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 C -0.120 4.120 4 C -0.203 4.203 5 C 0.099 3.901 6 N -0.646 5.646 7 C 0.050 3.950 8 C 0.217 3.783 9 H 0.056 0.944 10 O -0.582 6.582 11 C -0.649 4.649 12 H 0.047 0.953 13 C 0.035 3.965 14 N -0.892 5.892 15 Si 1.066 2.934 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.289 1.289 19 C -0.021 4.021 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.091 4.091 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.347 0.653 34 H 0.019 0.981 35 H 0.066 0.934 36 H 0.348 0.652 37 H 0.285 0.715 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.727 0.286 -6.170 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.177 4.177 4 C -0.243 4.243 5 C 0.007 3.993 6 N -0.276 5.276 7 C -0.079 4.079 8 C 0.160 3.840 9 H 0.074 0.926 10 O -0.386 6.386 11 C -0.688 4.688 12 H 0.066 0.934 13 C -0.174 4.174 14 N -0.526 5.526 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.022 4.022 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.109 4.109 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.193 0.807 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.466 -0.313 -4.502 17.073 hybrid contribution -1.172 0.281 -1.991 2.327 sum -17.638 -0.032 -6.493 18.795 Atomic orbital electron populations 1.21298 0.91891 1.01618 1.01848 1.21828 0.95021 0.91336 1.03548 1.21357 0.99962 0.93901 1.02458 1.23841 1.02445 1.01565 0.96426 1.20337 0.93219 0.97142 0.88652 1.60220 1.01959 1.06494 1.58974 1.22654 0.92745 0.94618 0.97866 1.19586 0.88147 0.81648 0.94654 0.92605 1.86507 1.85940 1.36385 1.29734 1.22402 1.01869 1.13409 1.31088 0.93438 1.25764 0.98762 0.99783 0.93071 1.70621 1.38148 1.12722 1.31131 0.83614 0.75962 0.74991 0.76003 1.20715 1.21450 1.21505 1.18751 0.95550 0.92918 0.94953 1.21024 0.98746 0.92934 1.00331 1.21051 0.97826 0.99083 0.96129 1.21083 1.00263 0.96566 0.96492 1.21108 0.99566 0.93755 0.99833 1.20932 0.95809 0.99694 0.94510 0.92052 0.92367 0.92552 0.92335 0.92015 0.91452 0.88834 0.88857 0.83222 0.96234 0.91581 0.80735 0.90337 0.86426 0.86353 0.86483 0.86309 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.73 37.16 0.32 -0.87 16 2 C -0.12 -1.48 2.70 -154.51 -0.42 -1.89 16 3 C -0.12 -1.41 8.49 37.16 0.32 -1.10 16 4 C -0.20 -2.77 8.43 -26.74 -0.23 -2.99 16 5 C 0.10 1.50 1.91 -132.75 -0.25 1.25 16 6 N -0.65 -11.77 6.59 -101.15 -0.67 -12.44 16 7 C 0.05 1.05 5.10 -3.83 -0.02 1.03 16 8 C 0.22 5.55 2.70 -27.88 -0.08 5.47 16 9 H 0.06 1.60 8.01 -51.93 -0.42 1.19 16 10 O -0.58 -14.49 11.46 -35.23 -0.40 -14.90 16 11 C -0.65 -18.31 8.76 -34.44 -0.30 -18.61 16 12 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 13 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 14 N -0.89 -27.54 13.53 55.43 0.75 -26.79 16 15 Si 1.07 25.27 29.90 -169.99 -5.08 20.18 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 19 C -0.02 -0.31 4.15 -104.62 -0.43 -0.75 16 20 C -0.11 -1.58 9.22 -39.59 -0.36 -1.95 16 21 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 22 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.09 -1.29 9.02 -39.58 -0.36 -1.65 16 25 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 26 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 27 H 0.06 0.62 7.81 -51.93 -0.41 0.22 16 28 H 0.06 0.72 7.49 -51.93 -0.39 0.33 16 29 H 0.06 0.62 7.99 -51.93 -0.41 0.20 16 30 H 0.07 0.82 8.05 -51.93 -0.42 0.41 16 31 H 0.09 1.33 7.78 -51.93 -0.40 0.92 16 32 H 0.09 1.18 7.42 -51.93 -0.39 0.79 16 33 H 0.35 6.19 6.20 -39.29 -0.24 5.95 16 34 H 0.02 0.41 7.64 -51.93 -0.40 0.01 16 35 H 0.07 1.47 7.98 -51.93 -0.41 1.06 16 36 H 0.35 7.78 9.04 45.56 0.41 8.19 16 37 H 0.28 8.97 6.47 -40.82 -0.26 8.71 16 38 H 0.12 1.60 7.39 -52.48 -0.39 1.21 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -31.07 342.45 -9.18 -40.25 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -5.83 Total: 15.48 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: -3.10 Total: -26.95 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.08 Total: -39.23 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.40 Total: -14.90 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.07 -9.18 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931080258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.792 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds