Wall clock time and date at job start Mon Mar 30 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 115.55626 * 2 1 4 4 C 1.52990 * 117.49717 * 214.31501 * 2 1 3 5 5 C 1.52997 * 117.50251 * 145.68780 * 2 1 3 6 6 N 1.46896 * 117.50284 * 214.98013 * 5 2 1 7 7 C 1.46894 * 111.00060 * 226.25286 * 6 5 2 8 8 C 1.52999 * 109.47156 * 185.43131 * 7 6 5 9 9 H 1.09001 * 109.47129 * 59.99779 * 8 7 6 10 10 O 1.42901 * 109.47154 * 299.99831 * 8 7 6 11 11 C 1.50701 * 109.47335 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99586 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99896 * 180.02562 * 11 8 7 14 14 N 1.31505 * 120.00062 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99601 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47005 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.47085 * 299.99731 * 15 13 11 18 18 H 1.48497 * 109.46916 * 60.00160 * 15 13 11 19 19 C 1.50703 * 117.51537 * 0.02562 * 5 2 1 20 20 C 1.38230 * 120.00485 * 105.77897 * 19 5 2 21 21 C 1.38231 * 120.00322 * 179.78506 * 20 19 5 22 22 C 1.38237 * 119.99699 * 0.43948 * 21 20 19 23 23 C 1.38230 * 120.00392 * 359.81163 * 22 21 20 24 24 C 1.38238 * 119.99570 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46937 * 279.88072 * 1 2 3 26 26 H 1.08996 * 109.47486 * 39.88752 * 1 2 3 27 27 H 1.09004 * 109.47247 * 159.89074 * 1 2 3 28 28 H 1.08999 * 109.46662 * 205.68729 * 3 2 1 29 29 H 1.09003 * 109.47336 * 325.69347 * 3 2 1 30 30 H 1.09000 * 109.46763 * 85.69122 * 3 2 1 31 31 H 1.09002 * 117.49674 * 145.02173 * 4 2 1 32 32 H 1.08996 * 117.50162 * 359.97438 * 4 2 1 33 33 H 1.00906 * 110.99526 * 350.20547 * 6 5 2 34 34 H 1.09001 * 109.47282 * 65.43004 * 7 6 5 35 35 H 1.08998 * 109.47344 * 305.42932 * 7 6 5 36 36 H 0.96700 * 114.00169 * 299.99951 * 10 8 7 37 37 H 0.96997 * 120.00448 * 0.02562 * 14 13 11 38 38 H 1.08009 * 119.99584 * 359.97438 * 20 19 5 39 39 H 1.07998 * 120.00347 * 180.26878 * 21 20 19 40 40 H 1.08006 * 119.99686 * 179.83278 * 22 21 20 41 41 H 1.07995 * 120.00413 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.99953 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2366 -1.1209 0.7650 6 7 3.4967 -0.7896 1.4432 7 6 4.5223 -1.8064 1.1746 8 6 5.7723 -1.5011 2.0022 9 1 5.5181 -1.5126 3.0621 10 8 6.2755 -0.2116 1.6470 11 6 6.8247 -2.5438 1.7262 12 1 6.6220 -3.3445 1.0304 13 6 8.0459 -2.4762 2.3628 14 7 8.2925 -1.5015 3.2104 15 14 9.3501 -3.7693 2.0211 16 1 10.5634 -3.4728 2.8243 17 1 8.8270 -5.1093 2.3897 18 1 9.6967 -3.7531 0.5772 19 6 1.3726 -2.1411 1.4605 20 6 1.2434 -3.4123 0.9332 21 6 0.4544 -4.3495 1.5736 22 6 -0.2127 -4.0125 2.7365 23 6 -0.0877 -2.7398 3.2611 24 6 0.7048 -1.8040 2.6230 25 1 -0.3633 0.1764 1.0125 26 1 -0.3634 0.7885 -0.6590 27 1 -0.3634 -0.9650 -0.3533 28 1 3.1823 1.3085 -0.4455 29 1 1.5810 2.0744 -0.5792 30 1 2.2772 1.7414 1.0248 31 1 3.1715 -0.8750 -1.2683 32 1 1.6112 -1.8586 -1.2680 33 1 3.8197 0.1287 1.1776 34 1 4.7765 -1.7949 0.1147 35 1 4.1385 -2.7900 1.4455 36 1 6.5226 -0.1286 0.7158 37 1 7.6152 -0.8303 3.3881 38 1 1.7615 -3.6743 0.0224 39 1 0.3570 -5.3440 1.1640 40 1 -0.8313 -4.7439 3.2354 41 1 -0.6086 -2.4767 4.1699 42 1 0.8021 -0.8094 3.0326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931080258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:19 Heat of formation + Delta-G solvation = -35.506798 kcal Electronic energy + Delta-G solvation = -21674.985824 eV Core-core repulsion = 18618.972365 eV Total energy + Delta-G solvation = -3056.013459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.25049 -39.07018 -38.17270 -34.55576 -34.21771 -32.09179 -31.78714 -30.02829 -29.04821 -28.20726 -25.91284 -24.17077 -23.40532 -22.75837 -21.18451 -19.85600 -19.33409 -17.64851 -17.36562 -16.61543 -16.55096 -15.89489 -15.78084 -15.62417 -15.29459 -14.92353 -14.61448 -14.50240 -14.24349 -13.96282 -13.81540 -13.66563 -13.45089 -13.12240 -13.02106 -12.68544 -12.56824 -12.27156 -12.25647 -12.01485 -11.94941 -11.93486 -11.44770 -11.11713 -10.67886 -10.64720 -10.12833 -9.78902 -9.56479 -9.30438 -8.63514 -6.48479 0.45603 0.52684 1.51725 1.59574 1.79361 2.50108 2.58036 2.83829 3.14811 3.24839 3.54241 3.73677 3.80015 3.98745 4.10024 4.11717 4.17665 4.27785 4.30581 4.41858 4.46547 4.67445 4.70844 4.71908 4.75831 4.79990 4.93204 4.95350 4.97597 5.00511 5.14431 5.17034 5.21032 5.37648 5.42643 5.58311 5.62655 5.73283 5.79675 6.05057 6.13148 6.16786 6.43961 6.55714 7.13751 7.48178 8.74286 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.005170 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.712379 B = 5414.341222 C = 6322.451495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.199 4.199 5 C 0.077 3.923 6 N -0.652 5.652 7 C 0.075 3.925 8 C 0.220 3.780 9 H 0.017 0.983 10 O -0.587 6.587 11 C -0.660 4.660 12 H 0.049 0.951 13 C -0.016 4.016 14 N -0.919 5.919 15 Si 1.116 2.884 16 H -0.284 1.284 17 H -0.272 1.272 18 H -0.268 1.268 19 C -0.038 4.038 20 C -0.129 4.129 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.109 4.109 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.347 0.653 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.361 0.639 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.055 -0.626 -7.193 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.177 4.177 4 C -0.239 4.239 5 C -0.015 4.015 6 N -0.283 5.283 7 C -0.054 4.054 8 C 0.162 3.838 9 H 0.034 0.966 10 O -0.392 6.392 11 C -0.698 4.698 12 H 0.067 0.933 13 C -0.218 4.218 14 N -0.555 5.555 15 Si 0.937 3.063 16 H -0.209 1.209 17 H -0.197 1.197 18 H -0.193 1.193 19 C -0.038 4.038 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.168 0.832 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.206 0.794 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.826 -1.216 -5.546 18.709 hybrid contribution -0.846 0.589 -1.662 1.956 sum -18.673 -0.627 -7.208 20.026 Atomic orbital electron populations 1.21300 0.90260 1.02322 1.02373 1.21965 0.96117 0.90986 1.01001 1.21386 1.00007 0.93931 1.02419 1.23821 1.02520 1.02400 0.95133 1.20414 0.92229 0.99416 0.89421 1.60079 1.02388 1.05621 1.60243 1.22138 0.91692 0.94730 0.96822 1.19361 0.89730 0.81361 0.93311 0.96557 1.86444 1.86192 1.35792 1.30822 1.22785 1.02578 1.13832 1.30611 0.93311 1.27319 1.01477 1.00859 0.92157 1.70769 1.37834 1.13711 1.33136 0.82975 0.73286 0.73059 0.76975 1.20945 1.19700 1.19268 1.18834 0.96111 0.93274 0.95610 1.21166 0.99637 0.93164 1.00824 1.21377 0.97083 0.99745 0.96217 1.21458 0.99958 0.96874 0.96156 1.21423 0.98991 0.93731 1.00371 1.21040 0.96753 1.00101 0.94805 0.92042 0.90356 0.92675 0.93110 0.89655 0.92102 0.89604 0.87797 0.83198 0.95898 0.92959 0.79375 0.92229 0.86552 0.84150 0.83611 0.84102 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 8.73 71.98 0.63 -1.47 16 2 C -0.10 -2.42 2.70 -52.18 -0.14 -2.56 16 3 C -0.12 -2.70 8.49 71.98 0.61 -2.09 16 4 C -0.20 -5.27 8.43 30.59 0.26 -5.02 16 5 C 0.08 2.32 1.91 2.78 0.01 2.33 16 6 N -0.65 -24.25 6.59 -473.92 -3.12 -27.37 16 7 C 0.08 3.26 5.10 86.30 0.44 3.70 16 8 C 0.22 11.59 2.70 29.85 0.08 11.67 16 9 H 0.02 1.00 8.01 -2.39 -0.02 0.98 16 10 O -0.59 -29.99 11.46 -148.98 -1.71 -31.70 16 11 C -0.66 -37.64 8.76 25.60 0.22 -37.42 16 12 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 13 C -0.02 -0.93 5.40 84.66 0.46 -0.47 16 14 N -0.92 -57.89 13.53 21.45 0.29 -57.60 16 15 Si 1.12 50.40 29.90 68.60 2.05 52.45 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 19 C -0.04 -1.11 4.15 -19.87 -0.08 -1.19 16 20 C -0.13 -3.58 9.22 22.27 0.21 -3.37 16 21 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 22 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 23 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 24 C -0.11 -3.03 9.02 22.27 0.20 -2.83 16 25 H 0.06 1.24 7.65 -2.38 -0.02 1.22 16 26 H 0.08 1.25 8.02 -2.39 -0.02 1.23 16 27 H 0.05 1.12 7.81 -2.38 -0.02 1.10 16 28 H 0.05 1.21 7.49 -2.39 -0.02 1.19 16 29 H 0.08 1.51 7.99 -2.39 -0.02 1.49 16 30 H 0.06 1.45 8.05 -2.39 -0.02 1.43 16 31 H 0.09 2.39 7.78 -2.39 -0.02 2.37 16 32 H 0.10 2.50 7.42 -2.39 -0.02 2.49 16 33 H 0.35 12.63 6.20 -89.69 -0.56 12.07 16 34 H 0.02 0.96 7.64 -2.39 -0.02 0.94 16 35 H 0.05 2.39 7.98 -2.39 -0.02 2.37 16 36 H 0.36 16.30 9.04 -74.06 -0.67 15.63 16 37 H 0.27 17.44 6.47 -92.71 -0.60 16.84 16 38 H 0.12 3.12 7.39 -2.91 -0.02 3.10 16 39 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 41 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.62 342.45 1.02 -66.59 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: -0.05 Total: 44.37 kcal Atomic # 6 Polarization: -50.30 SS G_CDS: 3.56 Total: -46.74 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.83 Total: -84.97 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.71 Total: -31.70 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -67.62 1.02 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931080258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.087 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds