Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 115.56243 * 2 1 4 4 C 1.53079 * 117.48910 * 214.28817 * 2 1 3 5 5 C 1.53001 * 59.98344 * 252.51589 * 4 2 1 6 6 N 1.46895 * 117.49848 * 107.50591 * 5 4 2 7 7 C 1.46898 * 111.00068 * 80.55493 * 6 5 4 8 8 C 1.53008 * 109.47280 * 181.47995 * 7 6 5 9 9 H 1.08997 * 109.46780 * 60.00170 * 8 7 6 10 10 O 1.42899 * 109.46864 * 300.00128 * 8 7 6 11 11 C 1.50698 * 109.46990 * 180.02562 * 8 7 6 12 12 H 1.07994 * 120.00294 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99840 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99927 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00184 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46636 * 59.99800 * 15 13 11 17 17 H 1.48492 * 109.46978 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47087 * 299.99862 * 15 13 11 19 19 C 1.50701 * 117.50030 * 252.50196 * 5 4 2 20 20 C 1.38246 * 119.99730 * 323.31539 * 19 5 4 21 21 C 1.38234 * 119.99711 * 179.97438 * 20 19 5 22 22 C 1.38238 * 119.99981 * 0.02562 * 21 20 19 23 23 C 1.38228 * 120.00082 * 0.26498 * 22 21 20 24 24 C 1.38229 * 120.00316 * 143.29723 * 19 5 4 25 25 H 1.09005 * 109.46681 * 274.31134 * 1 2 3 26 26 H 1.08998 * 109.46665 * 34.30954 * 1 2 3 27 27 H 1.08996 * 109.46950 * 154.31325 * 1 2 3 28 28 H 1.09003 * 109.47284 * 199.66824 * 3 2 1 29 29 H 1.08999 * 109.47652 * 319.66479 * 3 2 1 30 30 H 1.09000 * 109.47576 * 79.66968 * 3 2 1 31 31 H 1.08998 * 117.50803 * 145.03852 * 4 2 1 32 32 H 1.08998 * 117.51756 * 359.97438 * 4 2 1 33 33 H 1.00905 * 110.99775 * 316.60417 * 6 5 4 34 34 H 1.08997 * 109.47641 * 301.48036 * 7 6 5 35 35 H 1.08997 * 109.47075 * 61.48346 * 7 6 5 36 36 H 0.96695 * 114.00110 * 299.99976 * 10 8 7 37 37 H 0.96996 * 120.00410 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.00184 * 359.97438 * 20 19 5 39 39 H 1.07997 * 119.99569 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.99733 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00161 * 179.72674 * 23 22 21 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2366 -1.1220 -0.7650 5 6 2.2364 -1.1211 0.7650 6 7 1.3938 -2.1146 1.4437 7 6 2.0567 -3.4248 1.4880 8 6 1.1354 -4.4398 2.1679 9 1 0.2061 -4.5216 1.6040 10 8 0.8484 -4.0058 3.4988 11 6 1.8156 -5.7837 2.2139 12 1 2.8058 -5.9022 1.7993 13 6 1.1734 -6.8623 2.7843 14 7 -0.0326 -6.7181 3.2886 15 14 2.0163 -8.5284 2.8407 16 1 3.2821 -8.4168 3.6092 17 1 1.1222 -9.5133 3.5006 18 1 2.3150 -8.9791 1.4577 19 6 3.5293 -0.7812 1.4608 20 6 4.7328 -1.2051 0.9287 21 6 5.9187 -0.8929 1.5667 22 6 5.9011 -0.1573 2.7370 23 6 4.6974 0.2614 3.2722 24 6 3.5118 -0.0454 2.6308 25 1 -0.3633 0.0773 1.0248 26 1 -0.3632 0.8489 -0.5793 27 1 -0.3633 -0.9261 -0.4454 28 1 3.2200 1.2904 -0.3459 29 1 1.6404 2.0460 -0.6651 30 1 2.1808 1.7875 1.0110 31 1 3.1719 -0.8767 -1.2683 32 1 1.6116 -1.8600 -1.2677 33 1 0.4884 -2.1821 1.0034 34 1 2.2756 -3.7558 0.4729 35 1 2.9859 -3.3430 2.0519 36 1 1.6309 -3.9109 4.0588 37 1 -0.4846 -7.4769 3.6896 38 1 4.7464 -1.7801 0.0147 39 1 6.8588 -1.2237 1.1508 40 1 6.8277 0.0862 3.2357 41 1 4.6834 0.8323 4.1889 42 1 2.5716 0.2864 3.0461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931080259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = -7.390612 kcal Electronic energy + Delta-G solvation = -21682.057674 eV Core-core repulsion = 18627.263425 eV Total energy + Delta-G solvation = -3054.794250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07012 -37.83918 -35.88545 -32.87906 -32.02819 -30.95535 -30.74380 -28.63425 -27.64495 -27.06005 -24.28053 -22.95435 -22.30982 -20.70377 -19.98784 -18.58847 -16.97054 -16.40522 -15.58233 -15.27956 -14.73874 -14.56029 -14.41264 -14.04338 -13.89257 -13.65249 -13.25222 -13.00884 -12.76865 -12.67148 -12.49625 -12.33464 -12.12407 -11.73052 -11.39525 -11.23973 -10.99541 -10.96734 -10.86946 -10.80058 -10.73656 -10.11857 -10.03696 -9.55323 -8.94536 -8.73768 -8.57753 -8.49519 -8.00504 -7.69475 -5.97882 -4.16045 1.50561 1.58006 3.30348 3.35504 3.37307 3.74075 3.93763 4.38200 4.52518 4.67588 4.86422 5.00527 5.11457 5.16224 5.20688 5.26568 5.30018 5.49591 5.68244 5.68793 5.75332 5.83817 5.89192 5.94897 5.99964 6.01059 6.17702 6.18608 6.19914 6.26437 6.30897 6.40845 6.53420 6.62309 6.65507 6.83931 6.90238 7.15524 7.60833 7.71168 7.87023 7.95188 8.23569 8.87448 9.48860 9.65133 11.06318 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.005257 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.165887 B = 5324.777782 C = 6158.067608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.211 4.211 5 C 0.103 3.897 6 N -0.636 5.636 7 C 0.040 3.960 8 C 0.235 3.765 9 H 0.050 0.950 10 O -0.555 6.555 11 C -0.572 4.572 12 H 0.054 0.946 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.022 4.022 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.089 4.089 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.341 0.659 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.344 0.656 37 H 0.261 0.739 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 15.598 -5.541 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.114 4.114 3 C -0.166 4.166 4 C -0.251 4.251 5 C 0.010 3.990 6 N -0.265 5.265 7 C -0.089 4.089 8 C 0.177 3.823 9 H 0.067 0.933 10 O -0.357 6.357 11 C -0.611 4.611 12 H 0.072 0.928 13 C -0.126 4.126 14 N -0.495 5.495 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.023 4.023 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.107 4.107 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.187 0.813 37 H 0.070 0.930 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.790 15.648 -5.031 17.784 hybrid contribution 1.012 -1.467 -0.830 1.967 sum 7.802 14.180 -5.861 17.214 Atomic orbital electron populations 1.21335 0.91907 1.01633 1.02532 1.21782 0.94882 0.91334 1.03442 1.21287 0.99664 0.93874 1.01793 1.23944 1.02527 1.01740 0.96868 1.20341 0.93186 0.97089 0.88382 1.60279 1.04317 1.07596 1.54344 1.22867 0.99265 0.87743 0.99000 1.19297 0.93329 0.88440 0.81217 0.93252 1.86537 1.35063 1.89881 1.24180 1.21585 1.02974 0.94858 1.41655 0.92817 1.25017 0.94557 0.98649 0.94372 1.70070 1.12314 1.30636 1.36470 0.86742 0.79565 0.83826 0.78267 1.20134 1.21179 1.20233 1.18732 0.91773 0.96841 0.94963 1.21024 0.92028 0.99659 1.00330 1.21040 0.97756 0.99235 0.96156 1.21079 0.97830 0.99107 0.96385 1.21113 0.92553 1.00789 0.99796 1.20953 0.98072 0.97340 0.94366 0.91302 0.92350 0.92469 0.92653 0.92457 0.92078 0.89040 0.88892 0.83903 0.95960 0.91975 0.81316 0.92967 0.86454 0.86433 0.86547 0.86318 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 8.69 37.16 0.32 -1.08 16 2 C -0.11 -1.45 2.70 -154.47 -0.42 -1.87 16 3 C -0.11 -1.21 8.74 37.15 0.32 -0.88 16 4 C -0.21 -2.86 8.91 -26.69 -0.24 -3.10 16 5 C 0.10 1.55 1.91 -132.75 -0.25 1.30 16 6 N -0.64 -11.52 6.41 -101.14 -0.65 -12.17 16 7 C 0.04 0.83 5.11 -3.82 -0.02 0.81 16 8 C 0.24 6.02 3.02 -27.88 -0.08 5.94 16 9 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 10 O -0.55 -14.68 12.60 -35.23 -0.44 -15.13 16 11 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 14 N -0.86 -25.68 12.84 55.43 0.71 -24.96 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 C -0.02 -0.33 3.51 -104.62 -0.37 -0.70 16 20 C -0.11 -1.57 9.22 -39.58 -0.36 -1.93 16 21 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 22 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 23 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 24 C -0.09 -1.26 9.09 -39.58 -0.36 -1.62 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.59 7.99 -51.93 -0.42 0.18 16 27 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 28 H 0.05 0.62 7.80 -51.93 -0.41 0.21 16 29 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 30 H 0.06 0.68 7.71 -51.93 -0.40 0.28 16 31 H 0.09 1.15 7.40 -51.93 -0.38 0.77 16 32 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 33 H 0.34 6.12 6.95 -39.29 -0.27 5.85 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 1.36 7.63 -51.93 -0.40 0.96 16 36 H 0.34 8.38 9.04 45.56 0.41 8.79 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.12 1.58 7.36 -52.49 -0.39 1.20 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -30.47 345.91 -9.20 -39.67 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.97 Total: 13.97 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -3.05 Total: -22.98 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.06 Total: -37.13 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.44 Total: -15.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.47 -9.20 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931080259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.279 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds