Wall clock time and date at job start Mon Mar 30 2020 01:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52991 * 115.56243 * 2 1 4 4 C 1.53079 * 117.48910 * 214.28817 * 2 1 3 5 5 C 1.53001 * 59.98344 * 252.51589 * 4 2 1 6 6 N 1.46895 * 117.49848 * 107.50591 * 5 4 2 7 7 C 1.46898 * 111.00068 * 80.55493 * 6 5 4 8 8 C 1.53008 * 109.47280 * 181.47995 * 7 6 5 9 9 H 1.08997 * 109.46780 * 60.00170 * 8 7 6 10 10 O 1.42899 * 109.46864 * 300.00128 * 8 7 6 11 11 C 1.50698 * 109.46990 * 180.02562 * 8 7 6 12 12 H 1.07994 * 120.00294 * 359.97438 * 11 8 7 13 13 C 1.37881 * 119.99840 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99927 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00184 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46636 * 59.99800 * 15 13 11 17 17 H 1.48492 * 109.46978 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47087 * 299.99862 * 15 13 11 19 19 C 1.50701 * 117.50030 * 252.50196 * 5 4 2 20 20 C 1.38246 * 119.99730 * 323.31539 * 19 5 4 21 21 C 1.38234 * 119.99711 * 179.97438 * 20 19 5 22 22 C 1.38238 * 119.99981 * 0.02562 * 21 20 19 23 23 C 1.38228 * 120.00082 * 0.26498 * 22 21 20 24 24 C 1.38229 * 120.00316 * 143.29723 * 19 5 4 25 25 H 1.09005 * 109.46681 * 274.31134 * 1 2 3 26 26 H 1.08998 * 109.46665 * 34.30954 * 1 2 3 27 27 H 1.08996 * 109.46950 * 154.31325 * 1 2 3 28 28 H 1.09003 * 109.47284 * 199.66824 * 3 2 1 29 29 H 1.08999 * 109.47652 * 319.66479 * 3 2 1 30 30 H 1.09000 * 109.47576 * 79.66968 * 3 2 1 31 31 H 1.08998 * 117.50803 * 145.03852 * 4 2 1 32 32 H 1.08998 * 117.51756 * 359.97438 * 4 2 1 33 33 H 1.00905 * 110.99775 * 316.60417 * 6 5 4 34 34 H 1.08997 * 109.47641 * 301.48036 * 7 6 5 35 35 H 1.08997 * 109.47075 * 61.48346 * 7 6 5 36 36 H 0.96695 * 114.00110 * 299.99976 * 10 8 7 37 37 H 0.96996 * 120.00410 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.00184 * 359.97438 * 20 19 5 39 39 H 1.07997 * 119.99569 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.99733 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00161 * 179.72674 * 23 22 21 42 42 H 1.08002 * 119.99812 * 359.97438 * 24 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2366 -1.1220 -0.7650 5 6 2.2364 -1.1211 0.7650 6 7 1.3938 -2.1146 1.4437 7 6 2.0567 -3.4248 1.4880 8 6 1.1354 -4.4398 2.1679 9 1 0.2061 -4.5216 1.6040 10 8 0.8484 -4.0058 3.4988 11 6 1.8156 -5.7837 2.2139 12 1 2.8058 -5.9022 1.7993 13 6 1.1734 -6.8623 2.7843 14 7 -0.0326 -6.7181 3.2886 15 14 2.0163 -8.5284 2.8407 16 1 3.2821 -8.4168 3.6092 17 1 1.1222 -9.5133 3.5006 18 1 2.3150 -8.9791 1.4577 19 6 3.5293 -0.7812 1.4608 20 6 4.7328 -1.2051 0.9287 21 6 5.9187 -0.8929 1.5667 22 6 5.9011 -0.1573 2.7370 23 6 4.6974 0.2614 3.2722 24 6 3.5118 -0.0454 2.6308 25 1 -0.3633 0.0773 1.0248 26 1 -0.3632 0.8489 -0.5793 27 1 -0.3633 -0.9261 -0.4454 28 1 3.2200 1.2904 -0.3459 29 1 1.6404 2.0460 -0.6651 30 1 2.1808 1.7875 1.0110 31 1 3.1719 -0.8767 -1.2683 32 1 1.6116 -1.8600 -1.2677 33 1 0.4884 -2.1821 1.0034 34 1 2.2756 -3.7558 0.4729 35 1 2.9859 -3.3430 2.0519 36 1 1.6309 -3.9109 4.0588 37 1 -0.4846 -7.4769 3.6896 38 1 4.7464 -1.7801 0.0147 39 1 6.8588 -1.2237 1.1508 40 1 6.8277 0.0862 3.2357 41 1 4.6834 0.8323 4.1889 42 1 2.5716 0.2864 3.0461 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931080259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:22 Heat of formation + Delta-G solvation = -26.919308 kcal Electronic energy + Delta-G solvation = -21682.904502 eV Core-core repulsion = 18627.263425 eV Total energy + Delta-G solvation = -3055.641077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16853 -38.91274 -37.81185 -34.48286 -34.14807 -32.01401 -31.73641 -30.06803 -29.02170 -28.22624 -26.11000 -24.09877 -23.34936 -22.48960 -21.19155 -19.69329 -18.98711 -17.53779 -16.99881 -16.67907 -16.40171 -16.04620 -15.70309 -15.64329 -15.27080 -14.77596 -14.61849 -14.30082 -14.13266 -13.87534 -13.67692 -13.48382 -13.29476 -13.06089 -12.86757 -12.79754 -12.75704 -12.58240 -12.21788 -12.07486 -11.96202 -11.86835 -11.33904 -11.01446 -10.72387 -10.63046 -10.06991 -9.74076 -9.50982 -9.12302 -8.14207 -6.40457 0.50004 0.57520 1.39357 1.41227 1.49467 2.37131 2.63345 2.89622 3.11620 3.31175 3.59452 3.80321 3.89096 4.16296 4.16676 4.22202 4.28241 4.33568 4.45938 4.48930 4.63092 4.71842 4.76578 4.78527 4.82178 4.84963 5.00949 5.02574 5.04924 5.06499 5.18975 5.21990 5.27173 5.44176 5.58054 5.62615 5.67439 5.73976 5.79821 6.03260 6.17189 6.20324 6.46920 6.72223 7.33145 7.57652 8.90121 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.005257 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.165887 B = 5324.777782 C = 6158.067608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.105 4.105 4 C -0.207 4.207 5 C 0.082 3.918 6 N -0.641 5.641 7 C 0.068 3.932 8 C 0.236 3.764 9 H 0.018 0.982 10 O -0.568 6.568 11 C -0.588 4.588 12 H 0.056 0.944 13 C 0.028 3.972 14 N -0.899 5.899 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.037 4.037 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.105 4.105 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.339 0.661 34 H 0.018 0.982 35 H 0.054 0.946 36 H 0.351 0.649 37 H 0.262 0.738 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 16.359 -5.847 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.100 4.100 3 C -0.162 4.162 4 C -0.246 4.246 5 C -0.010 4.010 6 N -0.270 5.270 7 C -0.061 4.061 8 C 0.178 3.822 9 H 0.036 0.964 10 O -0.371 6.371 11 C -0.627 4.627 12 H 0.074 0.926 13 C -0.175 4.175 14 N -0.535 5.535 15 Si 0.784 3.216 16 H -0.193 1.193 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.037 4.037 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.124 4.124 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.578 16.428 -5.350 19.290 hybrid contribution 0.461 -1.635 -0.731 1.849 sum 9.039 14.793 -6.081 18.372 Atomic orbital electron populations 1.21356 0.91440 1.02324 1.02335 1.21917 0.95256 0.91698 1.01117 1.21283 0.99721 0.92899 1.02280 1.23923 1.03054 1.02032 0.95639 1.20429 0.93792 0.97678 0.89133 1.60167 1.04564 1.06600 1.55693 1.22321 0.97669 0.88303 0.97819 1.19168 0.92601 0.89463 0.80992 0.96410 1.86484 1.35849 1.89948 1.24839 1.21958 1.03137 0.96104 1.41456 0.92607 1.25882 0.95104 1.02677 0.93837 1.70208 1.13925 1.31875 1.37532 0.85620 0.78537 0.78828 0.78643 1.19281 1.20797 1.19314 1.18780 0.91729 0.97689 0.95543 1.21156 0.92510 1.00229 1.00787 1.21359 0.98095 0.98768 0.96232 1.21442 0.98750 0.98142 0.96062 1.21410 0.92202 1.00507 1.00340 1.21026 0.98593 0.98092 0.94667 0.92186 0.90046 0.93153 0.92723 0.90520 0.92114 0.87951 0.89618 0.84141 0.96372 0.92725 0.80485 0.92930 0.86568 0.84261 0.83733 0.84206 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 8.69 71.98 0.63 -2.10 16 2 C -0.10 -2.44 2.70 -52.16 -0.14 -2.58 16 3 C -0.10 -2.13 8.74 71.98 0.63 -1.51 16 4 C -0.21 -5.50 8.91 30.62 0.27 -5.22 16 5 C 0.08 2.46 1.91 2.78 0.01 2.46 16 6 N -0.64 -23.73 6.41 -473.90 -3.04 -26.77 16 7 C 0.07 2.92 5.11 86.31 0.44 3.36 16 8 C 0.24 12.43 3.02 29.85 0.09 12.52 16 9 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 10 O -0.57 -30.88 12.60 -148.98 -1.88 -32.75 16 11 C -0.59 -33.13 8.76 25.60 0.22 -32.90 16 12 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.03 1.57 5.40 84.66 0.46 2.03 16 14 N -0.90 -54.58 12.84 21.45 0.28 -54.30 16 15 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 C -0.04 -1.07 3.51 -19.86 -0.07 -1.14 16 20 C -0.13 -3.48 9.22 22.27 0.21 -3.27 16 21 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 22 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 23 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 24 C -0.11 -2.91 9.09 22.27 0.20 -2.71 16 25 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.08 1.50 7.99 -2.39 -0.02 1.48 16 27 H 0.05 1.22 7.35 -2.39 -0.02 1.21 16 28 H 0.05 1.13 7.80 -2.39 -0.02 1.11 16 29 H 0.08 1.27 8.02 -2.39 -0.02 1.25 16 30 H 0.06 1.26 7.71 -2.39 -0.02 1.24 16 31 H 0.10 2.48 7.40 -2.39 -0.02 2.46 16 32 H 0.09 2.39 8.05 -2.39 -0.02 2.37 16 33 H 0.34 12.59 6.95 -89.69 -0.62 11.97 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 2.42 7.63 -2.39 -0.02 2.40 16 36 H 0.35 17.51 9.04 -74.06 -0.67 16.84 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.12 3.07 7.36 -2.91 -0.02 3.05 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.12 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -65.34 345.91 0.71 -64.63 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.29 Total: 42.17 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 3.61 Total: -38.94 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.76 Total: -81.08 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.88 Total: -32.75 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.34 0.71 -64.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931080259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.709 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds