Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38291 * 119.92295 * 2 1 4 4 C 1.38103 * 120.07254 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.92806 * 359.97438 * 4 3 2 6 6 N 1.39678 * 120.07692 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99709 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.47355 * 269.99919 * 7 6 5 9 9 H 1.08995 * 109.46729 * 60.00268 * 8 7 6 10 10 O 1.42901 * 109.46576 * 300.00101 * 8 7 6 11 11 C 1.50697 * 109.46894 * 180.02562 * 8 7 6 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 8 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.46496 * 120.00123 * 180.02562 * 6 5 4 20 20 C 1.53004 * 109.46843 * 270.00112 * 19 6 5 21 21 C 1.53001 * 117.49712 * 243.61628 * 20 19 6 22 22 C 1.52997 * 60.00150 * 252.51327 * 21 20 19 23 23 C 1.38910 * 119.85150 * 0.26269 * 5 4 3 24 24 C 1.38108 * 119.92004 * 359.48227 * 23 5 4 25 25 H 1.09004 * 109.47237 * 90.00840 * 1 2 3 26 26 H 1.08999 * 109.47297 * 210.00313 * 1 2 3 27 27 H 1.08995 * 109.47557 * 330.00376 * 1 2 3 28 28 H 1.07996 * 119.96373 * 359.95273 * 3 2 1 29 29 H 1.08010 * 120.03318 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47160 * 149.99922 * 7 6 5 31 31 H 1.08999 * 109.47596 * 29.99726 * 7 6 5 32 32 H 0.96703 * 114.00389 * 299.99541 * 10 8 7 33 33 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47372 * 30.00007 * 19 6 5 35 35 H 1.08993 * 109.47244 * 150.00399 * 19 6 5 36 36 H 1.08992 * 115.55131 * 29.33268 * 20 19 6 37 37 H 1.09004 * 117.49940 * 0.02562 * 21 20 19 38 38 H 1.09005 * 117.49249 * 145.01910 * 21 20 19 39 39 H 1.08997 * 117.49764 * 252.50982 * 22 21 20 40 40 H 1.09004 * 117.49099 * 107.49299 * 22 21 20 41 41 H 1.07995 * 120.03884 * 179.72840 * 23 5 4 42 42 H 1.08005 * 119.96260 * 180.25635 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6707 0.0002 0.0016 7 6 6.4031 1.2689 0.0010 8 6 6.6581 1.7100 -1.4417 9 1 5.7058 1.8401 -1.9555 10 8 7.4305 0.7138 -2.1148 11 6 7.4121 3.0148 -1.4422 12 1 7.6828 3.4825 -0.5071 13 6 7.7574 3.6110 -2.6365 14 7 8.4149 4.7500 -2.6370 15 14 7.2899 2.8017 -4.2539 16 1 8.3781 1.8864 -4.6820 17 1 6.0343 2.0289 -4.0761 18 1 7.0858 3.8464 -5.2893 19 6 6.4032 -1.2685 0.0022 20 6 6.6582 -1.7095 1.4449 21 6 8.1131 -1.7977 1.9100 22 6 7.3108 -3.0764 1.6609 23 6 3.5779 -1.2020 -0.0034 24 6 2.1968 -1.1984 0.0014 25 1 -0.3634 -0.0002 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6549 2.1328 -0.0008 29 1 4.1159 2.1387 0.0010 30 1 7.3555 1.1389 0.5150 31 1 5.8140 2.0288 0.5145 32 1 8.2930 0.5455 -1.7112 33 1 8.6574 5.1696 -3.4773 34 1 5.8142 -2.0285 -0.5113 35 1 7.3556 -1.1384 -0.5116 36 1 5.9152 -1.3858 2.1737 37 1 8.8887 -1.5411 1.1883 38 1 8.3276 -1.5316 2.9451 39 1 6.9975 -3.6516 2.5321 40 1 7.5587 -3.6614 0.7752 41 1 4.1161 -2.1383 -0.0070 42 1 1.6550 -2.1327 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931743702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = 0.992679 kcal Electronic energy + Delta-G solvation = -21569.818951 eV Core-core repulsion = 18515.388228 eV Total energy + Delta-G solvation = -3054.430723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.53550 -37.69350 -36.56113 -34.82943 -32.32525 -31.35937 -30.84446 -29.14830 -27.10676 -25.95695 -23.59038 -22.37952 -22.17414 -21.00767 -20.65974 -19.68052 -17.51826 -16.91385 -15.89533 -15.09593 -15.03647 -14.82902 -14.57464 -14.14814 -14.05205 -13.64827 -13.51856 -13.41357 -12.99590 -12.86488 -12.39599 -12.02401 -11.95531 -11.67710 -11.50490 -11.42500 -11.16158 -11.07067 -10.88707 -10.76088 -10.52689 -10.25913 -10.02328 -9.82053 -9.56895 -9.09448 -8.70719 -8.57959 -8.49157 -6.70117 -6.18670 -4.31575 1.80317 1.95106 3.42440 3.45396 3.49912 3.60009 3.88173 4.20814 4.46340 4.80100 4.93816 5.00549 5.11412 5.13399 5.22636 5.35086 5.44797 5.48168 5.60156 5.65635 5.69421 5.75729 5.78945 5.85439 5.88682 5.93927 5.95166 6.04385 6.10655 6.23513 6.24504 6.35129 6.38715 6.49838 6.71652 6.78764 7.03078 7.22138 7.29006 7.45041 7.81803 7.98863 8.20170 8.74962 8.92988 9.44895 10.91298 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.006732 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.930218 B = 4158.106905 C = 5802.413254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.164 4.164 3 C -0.071 4.071 4 C -0.194 4.194 5 C 0.225 3.775 6 N -0.612 5.612 7 C 0.105 3.895 8 C 0.178 3.822 9 H 0.062 0.938 10 O -0.582 6.582 11 C -0.564 4.564 12 H 0.075 0.925 13 C 0.085 3.915 14 N -0.891 5.891 15 Si 0.914 3.086 16 H -0.279 1.279 17 H -0.268 1.268 18 H -0.305 1.305 19 C 0.158 3.842 20 C -0.168 4.168 21 C -0.179 4.179 22 C -0.180 4.180 23 C -0.203 4.203 24 C -0.075 4.075 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.356 0.644 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 -13.321 7.697 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.216 4.216 5 C 0.122 3.878 6 N -0.318 5.318 7 C -0.017 4.017 8 C 0.120 3.880 9 H 0.080 0.920 10 O -0.388 6.388 11 C -0.602 4.602 12 H 0.093 0.907 13 C -0.120 4.120 14 N -0.528 5.528 15 Si 0.744 3.256 16 H -0.205 1.205 17 H -0.193 1.193 18 H -0.234 1.234 19 C 0.034 3.966 20 C -0.188 4.188 21 C -0.215 4.215 22 C -0.218 4.218 23 C -0.226 4.226 24 C -0.094 4.094 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.202 0.798 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.532 -13.176 7.214 17.276 hybrid contribution 0.438 -0.160 -0.427 0.633 sum -8.094 -13.337 6.787 17.013 Atomic orbital electron populations 1.20591 0.92105 1.01662 1.01313 1.19539 0.95378 0.93216 1.08487 1.20730 0.93441 0.97084 0.97740 1.20839 0.94249 0.97116 1.09431 1.17901 0.83589 0.93682 0.92655 1.46661 1.01528 1.05774 1.77857 1.22251 0.95738 0.83820 0.99921 1.20352 0.92683 0.86652 0.88336 0.92024 1.86422 1.32088 1.61760 1.58500 1.21469 1.38193 1.05600 0.94928 0.90741 1.24994 0.93160 0.93911 0.99947 1.69955 1.38198 1.17068 1.27541 0.86242 0.80106 0.77639 0.81656 1.20525 1.19276 1.23365 1.20931 0.97360 0.85717 0.92577 1.22993 0.96230 0.99917 0.99642 1.23018 0.94641 1.01641 1.02249 1.22905 1.05043 0.90761 1.03092 1.20605 0.94143 0.96348 1.11463 1.20638 0.93368 0.96899 0.98484 0.92312 0.92529 0.92383 0.86679 0.85487 0.91222 0.90696 0.79787 0.92463 0.90976 0.89992 0.87919 0.88573 0.89216 0.89158 0.88843 0.86454 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.01 36.00 0.36 -0.72 16 2 C -0.16 -2.29 5.88 -104.59 -0.62 -2.91 16 3 C -0.07 -1.08 9.69 -39.61 -0.38 -1.46 16 4 C -0.19 -3.31 9.21 -39.38 -0.36 -3.68 16 5 C 0.23 3.81 6.55 -83.79 -0.55 3.26 16 6 N -0.61 -10.21 2.53 -171.75 -0.43 -10.65 16 7 C 0.11 1.97 4.79 -4.04 -0.02 1.95 16 8 C 0.18 4.04 2.57 -27.88 -0.07 3.97 16 9 H 0.06 1.54 7.20 -51.93 -0.37 1.17 16 10 O -0.58 -12.78 9.75 -35.23 -0.34 -13.12 16 11 C -0.56 -15.16 9.34 -34.44 -0.32 -15.48 16 12 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 13 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 14 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 15 Si 0.91 23.32 26.18 -169.99 -4.45 18.87 16 16 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.92 6.54 56.52 0.37 -6.55 16 18 H -0.31 -7.77 7.11 56.52 0.40 -7.36 16 19 C 0.16 2.25 5.19 -4.04 -0.02 2.23 16 20 C -0.17 -2.08 6.01 -90.62 -0.54 -2.63 16 21 C -0.18 -2.01 10.18 -26.73 -0.27 -2.28 16 22 C -0.18 -1.86 10.25 -26.73 -0.27 -2.13 16 23 C -0.20 -3.06 9.21 -39.38 -0.36 -3.43 16 24 C -0.08 -1.04 9.69 -39.61 -0.38 -1.43 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 29 H 0.13 2.26 6.14 -52.48 -0.32 1.94 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.07 1.42 6.20 -51.93 -0.32 1.09 16 32 H 0.36 6.81 8.78 45.56 0.40 7.21 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 35 H 0.08 1.19 6.61 -51.93 -0.34 0.85 16 36 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.10 1.08 8.03 -51.93 -0.42 0.67 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.12 1.61 6.14 -52.49 -0.32 1.28 16 42 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -30.24 339.87 -9.08 -39.32 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.83 Total: 8.80 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.92 Total: -22.41 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.34 Total: -36.58 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.34 Total: -13.12 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.45 Total: 18.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.24 -9.08 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931743702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.314 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds