Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38291 * 119.92295 * 2 1 4 4 C 1.38103 * 120.07254 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.92806 * 359.97438 * 4 3 2 6 6 N 1.39678 * 120.07692 * 179.97438 * 5 4 3 7 7 C 1.46496 * 119.99709 * 0.02562 * 6 5 4 8 8 C 1.53007 * 109.47355 * 269.99919 * 7 6 5 9 9 H 1.08995 * 109.46729 * 60.00268 * 8 7 6 10 10 O 1.42901 * 109.46576 * 300.00101 * 8 7 6 11 11 C 1.50697 * 109.46894 * 180.02562 * 8 7 6 12 12 H 1.08002 * 120.00599 * 0.02562 * 11 8 7 13 13 C 1.37880 * 119.99675 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00210 * 179.97438 * 13 11 8 15 15 Si 1.86800 * 120.00019 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 C 1.46496 * 120.00123 * 180.02562 * 6 5 4 20 20 C 1.53004 * 109.46843 * 270.00112 * 19 6 5 21 21 C 1.53001 * 117.49712 * 243.61628 * 20 19 6 22 22 C 1.52997 * 60.00150 * 252.51327 * 21 20 19 23 23 C 1.38910 * 119.85150 * 0.26269 * 5 4 3 24 24 C 1.38108 * 119.92004 * 359.48227 * 23 5 4 25 25 H 1.09004 * 109.47237 * 90.00840 * 1 2 3 26 26 H 1.08999 * 109.47297 * 210.00313 * 1 2 3 27 27 H 1.08995 * 109.47557 * 330.00376 * 1 2 3 28 28 H 1.07996 * 119.96373 * 359.95273 * 3 2 1 29 29 H 1.08010 * 120.03318 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47160 * 149.99922 * 7 6 5 31 31 H 1.08999 * 109.47596 * 29.99726 * 7 6 5 32 32 H 0.96703 * 114.00389 * 299.99541 * 10 8 7 33 33 H 0.96998 * 119.99640 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47372 * 30.00007 * 19 6 5 35 35 H 1.08993 * 109.47244 * 150.00399 * 19 6 5 36 36 H 1.08992 * 115.55131 * 29.33268 * 20 19 6 37 37 H 1.09004 * 117.49940 * 0.02562 * 21 20 19 38 38 H 1.09005 * 117.49249 * 145.01910 * 21 20 19 39 39 H 1.08997 * 117.49764 * 252.50982 * 22 21 20 40 40 H 1.09004 * 117.49099 * 107.49299 * 22 21 20 41 41 H 1.07995 * 120.03884 * 179.72840 * 23 5 4 42 42 H 1.08005 * 119.96260 * 180.25635 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6707 0.0002 0.0016 7 6 6.4031 1.2689 0.0010 8 6 6.6581 1.7100 -1.4417 9 1 5.7058 1.8401 -1.9555 10 8 7.4305 0.7138 -2.1148 11 6 7.4121 3.0148 -1.4422 12 1 7.6828 3.4825 -0.5071 13 6 7.7574 3.6110 -2.6365 14 7 8.4149 4.7500 -2.6370 15 14 7.2899 2.8017 -4.2539 16 1 8.3781 1.8864 -4.6820 17 1 6.0343 2.0289 -4.0761 18 1 7.0858 3.8464 -5.2893 19 6 6.4032 -1.2685 0.0022 20 6 6.6582 -1.7095 1.4449 21 6 8.1131 -1.7977 1.9100 22 6 7.3108 -3.0764 1.6609 23 6 3.5779 -1.2020 -0.0034 24 6 2.1968 -1.1984 0.0014 25 1 -0.3634 -0.0002 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6549 2.1328 -0.0008 29 1 4.1159 2.1387 0.0010 30 1 7.3555 1.1389 0.5150 31 1 5.8140 2.0288 0.5145 32 1 8.2930 0.5455 -1.7112 33 1 8.6574 5.1696 -3.4773 34 1 5.8142 -2.0285 -0.5113 35 1 7.3556 -1.1384 -0.5116 36 1 5.9152 -1.3858 2.1737 37 1 8.8887 -1.5411 1.1883 38 1 8.3276 -1.5316 2.9451 39 1 6.9975 -3.6516 2.5321 40 1 7.5587 -3.6614 0.7752 41 1 4.1161 -2.1383 -0.0070 42 1 1.6550 -2.1327 0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931743702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = -16.143830 kcal Electronic energy + Delta-G solvation = -21570.562045 eV Core-core repulsion = 18515.388228 eV Total energy + Delta-G solvation = -3055.173818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.74898 -38.84042 -38.01012 -36.17138 -34.48144 -32.52478 -32.05293 -30.72512 -28.30257 -27.51740 -24.95458 -23.45879 -23.19174 -22.57750 -21.79470 -20.89994 -19.44039 -18.22841 -17.13544 -16.84898 -16.57859 -16.25505 -15.68421 -15.62740 -15.39047 -14.89980 -14.87468 -14.62367 -14.46350 -14.19043 -13.80099 -13.37422 -13.11202 -13.03636 -12.86596 -12.74050 -12.51859 -12.45668 -12.31891 -12.15853 -11.89169 -11.62021 -11.45766 -11.20693 -10.91282 -10.88932 -10.68660 -10.12265 -9.74383 -8.40508 -7.95987 -6.54413 0.62207 0.78277 1.36626 1.37625 1.53820 2.26438 2.33515 2.93992 2.96409 3.03796 3.84452 3.89931 4.00267 4.03497 4.15107 4.16353 4.22028 4.30220 4.45132 4.48402 4.54794 4.64476 4.67836 4.80763 4.84395 4.90223 4.92706 4.96528 5.03646 5.05448 5.19945 5.26830 5.29022 5.33724 5.38726 5.42719 5.56468 5.63302 5.90008 6.02985 6.13578 6.46576 6.60367 6.73959 7.13061 7.27989 8.73644 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.006732 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.930218 B = 4158.106905 C = 5802.413254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.164 4.164 3 C -0.082 4.082 4 C -0.220 4.220 5 C 0.202 3.798 6 N -0.616 5.616 7 C 0.123 3.877 8 C 0.191 3.809 9 H 0.039 0.961 10 O -0.583 6.583 11 C -0.560 4.560 12 H 0.047 0.953 13 C 0.037 3.963 14 N -0.933 5.933 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.303 1.303 19 C 0.159 3.841 20 C -0.178 4.178 21 C -0.183 4.183 22 C -0.159 4.159 23 C -0.203 4.203 24 C -0.076 4.076 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.371 0.629 33 H 0.268 0.732 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 -16.026 7.784 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.166 4.166 3 C -0.101 4.101 4 C -0.243 4.243 5 C 0.100 3.900 6 N -0.323 5.323 7 C -0.001 4.001 8 C 0.132 3.868 9 H 0.057 0.943 10 O -0.390 6.390 11 C -0.599 4.599 12 H 0.065 0.935 13 C -0.164 4.164 14 N -0.572 5.572 15 Si 0.800 3.200 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.231 1.231 19 C 0.036 3.964 20 C -0.198 4.198 21 C -0.220 4.220 22 C -0.197 4.197 23 C -0.226 4.226 24 C -0.095 4.095 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.859 -15.909 7.313 20.094 hybrid contribution 0.789 0.668 -0.390 1.105 sum -9.069 -15.241 6.923 19.038 Atomic orbital electron populations 1.20643 0.89612 1.03041 1.02215 1.19962 0.97256 0.92666 1.06680 1.20971 0.92847 0.98531 0.97745 1.20872 0.95339 0.96666 1.11374 1.18131 0.83666 0.94367 0.93863 1.46570 1.01659 1.05536 1.78567 1.21795 0.96220 0.85095 0.96988 1.20041 0.90964 0.85160 0.90598 0.94283 1.86342 1.33057 1.60883 1.58753 1.21780 1.37428 1.07033 0.93623 0.93462 1.25694 0.93400 0.94363 1.02906 1.70054 1.40149 1.18643 1.28366 0.85340 0.79494 0.76720 0.78478 1.19825 1.19861 1.23111 1.21010 0.96837 0.84670 0.93873 1.22776 0.96679 1.02172 0.98152 1.23079 0.93866 1.02599 1.02462 1.22993 1.02841 0.89922 1.03925 1.20833 0.94872 0.96096 1.10785 1.21041 0.93058 0.98198 0.97182 0.91516 0.90698 0.91571 0.85467 0.87543 0.90637 0.91544 0.78126 0.92255 0.90360 0.90500 0.89098 0.88730 0.88776 0.87749 0.87816 0.85024 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 10.01 71.23 0.71 -1.11 16 2 C -0.16 -4.21 5.88 -19.84 -0.12 -4.33 16 3 C -0.08 -2.45 9.69 22.25 0.22 -2.24 16 4 C -0.22 -7.67 9.21 22.40 0.21 -7.46 16 5 C 0.20 6.79 6.55 38.21 0.25 7.04 16 6 N -0.62 -20.45 2.53 -697.30 -1.76 -22.21 16 7 C 0.12 4.69 4.79 86.38 0.41 5.11 16 8 C 0.19 8.79 2.57 29.85 0.08 8.87 16 9 H 0.04 2.00 7.20 -2.39 -0.02 1.98 16 10 O -0.58 -25.14 9.75 -148.98 -1.45 -26.59 16 11 C -0.56 -30.85 9.34 25.60 0.24 -30.61 16 12 H 0.05 2.81 7.99 -2.91 -0.02 2.79 16 13 C 0.04 2.13 5.47 84.65 0.46 2.60 16 14 N -0.93 -57.11 13.96 21.45 0.30 -56.81 16 15 Si 0.97 48.49 26.18 68.60 1.80 50.28 16 16 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.27 -13.80 6.54 99.48 0.65 -13.15 16 18 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 19 C 0.16 4.33 5.19 86.38 0.45 4.78 16 20 C -0.18 -4.14 6.01 -10.79 -0.06 -4.21 16 21 C -0.18 -3.82 10.18 30.59 0.31 -3.50 16 22 C -0.16 -2.85 10.25 30.59 0.31 -2.54 16 23 C -0.20 -5.78 9.21 22.40 0.21 -5.57 16 24 C -0.08 -1.91 9.69 22.25 0.22 -1.70 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 27 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 28 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 29 H 0.11 4.04 6.14 -2.91 -0.02 4.02 16 30 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 31 H 0.07 2.63 6.20 -2.39 -0.01 2.62 16 32 H 0.37 13.79 8.78 -74.06 -0.65 13.14 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.08 2.01 6.19 -2.39 -0.01 1.99 16 35 H 0.08 2.14 6.61 -2.39 -0.02 2.12 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.09 2.00 8.03 -2.39 -0.02 1.98 16 38 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 3.28 6.14 -2.91 -0.02 3.26 16 42 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -65.14 339.87 3.07 -62.07 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.30 Total: 28.15 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 3.89 Total: -34.89 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.46 Total: -79.03 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.45 Total: -26.59 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.80 Total: 50.28 kcal Total: -65.14 3.07 -62.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931743702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.930 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds