Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38284 * 119.92655 * 2 1 4 4 C 1.38104 * 120.07725 * 179.70269 * 3 2 1 5 5 C 1.38916 * 119.92232 * 0.27539 * 4 3 2 6 6 N 1.39671 * 120.07189 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00248 * 3.59122 * 6 5 4 8 8 C 1.52996 * 109.47053 * 90.00261 * 7 6 5 9 9 H 1.09003 * 109.47665 * 59.99741 * 8 7 6 10 10 O 1.42905 * 109.46985 * 299.99690 * 8 7 6 11 11 C 1.50706 * 109.47161 * 180.02562 * 8 7 6 12 12 H 1.07999 * 119.99534 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99844 * 180.02562 * 11 8 7 14 14 N 1.31519 * 120.00125 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99681 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47235 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47123 * 119.99451 * 15 13 11 18 18 H 1.48508 * 109.46720 * 239.99643 * 15 13 11 19 19 C 1.46505 * 119.99599 * 183.59286 * 6 5 4 20 20 C 1.53781 * 113.61221 * 212.03902 * 19 6 5 21 21 C 1.53953 * 87.01995 * 220.04615 * 20 19 6 22 22 C 1.53781 * 113.61417 * 114.43260 * 19 6 5 23 23 C 1.38910 * 119.85213 * 359.97438 * 5 4 3 24 24 C 1.38112 * 119.92202 * 0.02562 * 23 5 4 25 25 H 1.08998 * 109.47517 * 89.99822 * 1 2 3 26 26 H 1.09001 * 109.47249 * 210.00294 * 1 2 3 27 27 H 1.09000 * 109.47441 * 330.00006 * 1 2 3 28 28 H 1.08002 * 119.95913 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03789 * 180.29630 * 4 3 2 30 30 H 1.09000 * 109.46728 * 210.00178 * 7 6 5 31 31 H 1.08997 * 109.47251 * 330.00093 * 7 6 5 32 32 H 0.96694 * 114.00349 * 300.00238 * 10 8 7 33 33 H 0.96994 * 119.99442 * 180.02562 * 14 13 11 34 34 H 1.09002 * 112.85055 * 343.23620 * 19 6 5 35 35 H 1.09004 * 113.61630 * 334.57088 * 20 19 6 36 36 H 1.09006 * 113.61399 * 105.46671 * 20 19 6 37 37 H 1.08991 * 113.54249 * 270.81092 * 21 20 19 38 38 H 1.09007 * 113.66253 * 139.92740 * 21 20 19 39 39 H 1.08997 * 113.61262 * 254.52732 * 22 19 6 40 40 H 1.09006 * 113.61406 * 25.34753 * 22 19 6 41 41 H 1.07999 * 120.03919 * 180.02562 * 23 5 4 42 42 H 1.08000 * 119.95691 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 0.0062 5 6 4.2740 -0.0001 0.0067 6 7 5.6707 0.0000 0.0135 7 6 6.4028 1.2660 0.0996 8 6 6.6507 1.6128 1.5690 9 1 7.2375 0.8213 2.0352 10 8 5.3987 1.7395 2.2462 11 6 7.4033 2.9155 1.6576 12 1 7.6776 3.4430 0.7560 13 6 7.7423 3.4333 2.8897 14 7 7.4086 2.7906 3.9875 15 14 8.6746 5.0483 2.9995 16 1 8.9279 5.5677 1.6315 17 1 7.8679 6.0345 3.7623 18 1 9.9694 4.8263 3.6919 19 6 6.4035 -1.2661 -0.0656 20 6 7.7423 -1.2512 0.6910 21 6 8.3257 -2.0507 -0.4882 22 6 7.2226 -1.4242 -1.3575 23 6 3.5779 -1.2021 0.0014 24 6 2.1968 -1.1985 -0.0048 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6550 2.1327 -0.0004 29 1 4.1160 2.1385 0.0110 30 1 7.3577 1.1693 -0.4170 31 1 5.8160 2.0575 -0.3666 32 1 4.8233 2.4270 1.8839 33 1 7.6469 3.1551 4.8542 34 1 5.7811 -2.1306 0.1653 35 1 8.1720 -0.2552 0.7986 36 1 7.7203 -1.8072 1.6284 37 1 8.2299 -3.1301 -0.3722 38 1 9.3322 -1.7419 -0.7707 39 1 6.7816 -2.1197 -2.0716 40 1 7.5087 -0.4756 -1.8119 41 1 4.1160 -2.1385 0.0022 42 1 1.6550 -2.1327 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931743734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = -0.024043 kcal Electronic energy + Delta-G solvation = -21950.964294 eV Core-core repulsion = 18896.489482 eV Total energy + Delta-G solvation = -3054.474811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.77920 -38.17585 -35.99081 -34.13051 -32.11814 -31.10980 -30.47509 -28.53438 -25.96841 -25.43019 -25.33104 -23.24585 -22.15143 -20.93536 -19.94194 -18.78342 -17.35570 -16.92055 -15.58306 -15.00864 -14.74262 -14.63156 -14.45790 -14.02807 -13.83214 -13.52316 -13.26572 -13.18454 -12.81762 -12.42688 -12.26598 -11.99052 -11.82324 -11.65246 -11.23565 -11.14530 -11.02437 -10.83936 -10.75053 -10.68731 -10.37868 -10.15813 -10.14841 -9.98684 -9.39767 -8.83345 -8.59201 -8.42758 -8.18337 -6.50878 -6.01964 -4.23236 1.94417 2.10834 3.24020 3.32719 3.35123 3.70030 4.34274 4.37214 4.83830 4.91859 5.01430 5.21464 5.23821 5.27521 5.34138 5.41841 5.60205 5.69697 5.83353 5.84040 5.88483 5.91266 6.02491 6.04363 6.04885 6.10764 6.20522 6.33360 6.34833 6.38458 6.49227 6.55258 6.63660 6.72482 6.87292 6.91839 7.15206 7.39525 7.66874 7.78597 7.87563 8.12376 8.22234 8.80975 9.40716 9.56764 11.00128 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.006338 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.013677 B = 4417.069378 C = 5875.374005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.167 4.167 3 C -0.071 4.071 4 C -0.184 4.184 5 C 0.241 3.759 6 N -0.603 5.603 7 C 0.092 3.908 8 C 0.214 3.786 9 H 0.061 0.939 10 O -0.555 6.555 11 C -0.577 4.577 12 H 0.056 0.944 13 C 0.082 3.918 14 N -0.856 5.856 15 Si 0.887 3.113 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.133 3.867 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.154 4.154 23 C -0.209 4.209 24 C -0.074 4.074 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.340 0.660 33 H 0.260 0.740 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -7.898 -9.550 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.169 4.169 3 C -0.090 4.090 4 C -0.206 4.206 5 C 0.137 3.863 6 N -0.309 5.309 7 C -0.031 4.031 8 C 0.156 3.844 9 H 0.079 0.921 10 O -0.357 6.357 11 C -0.615 4.615 12 H 0.074 0.926 13 C -0.125 4.125 14 N -0.491 5.491 15 Si 0.714 3.286 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C 0.028 3.972 20 C -0.190 4.190 21 C -0.180 4.180 22 C -0.193 4.193 23 C -0.231 4.231 24 C -0.093 4.093 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.184 0.816 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.445 -8.387 -8.985 13.443 hybrid contribution 0.520 1.389 -0.100 1.487 sum -4.926 -6.997 -9.085 12.480 Atomic orbital electron populations 1.20574 0.92273 1.01720 1.00976 1.19474 0.95223 0.93229 1.08998 1.20686 0.93472 0.96931 0.97912 1.20691 0.93950 0.96828 1.09179 1.17792 0.83493 0.93547 0.91453 1.46697 1.01625 1.05671 1.76910 1.22503 0.95346 0.83499 1.01721 1.19900 0.83251 0.96085 0.85194 0.92138 1.86626 1.29705 1.58146 1.61239 1.21658 1.39154 1.08087 0.92641 0.92619 1.25014 0.94664 0.96976 0.95814 1.70097 1.43618 1.37943 0.97448 0.86649 0.79732 0.83989 0.78198 1.19702 1.20862 1.20908 1.22437 0.91724 0.87436 0.95645 1.23573 0.95929 1.02127 0.97414 1.22729 0.98483 0.99294 0.97458 1.23457 0.97434 1.01098 0.97356 1.20551 0.94163 0.96228 1.12193 1.20591 0.93324 0.96835 0.98552 0.92590 0.92590 0.92409 0.86909 0.85985 0.91516 0.91739 0.81634 0.93032 0.88133 0.88030 0.91336 0.90520 0.91277 0.91838 0.89921 0.86870 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.17 -2.47 5.88 -104.59 -0.62 -3.09 16 3 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 16 4 C -0.18 -3.23 7.83 -39.38 -0.31 -3.54 16 5 C 0.24 4.33 6.14 -83.79 -0.51 3.81 16 6 N -0.60 -10.81 2.75 -163.26 -0.45 -11.26 16 7 C 0.09 1.81 4.10 -4.04 -0.02 1.79 16 8 C 0.21 5.21 2.76 -27.88 -0.08 5.13 16 9 H 0.06 1.63 6.15 -51.93 -0.32 1.31 16 10 O -0.55 -14.24 11.44 -35.23 -0.40 -14.64 16 11 C -0.58 -15.29 8.76 -34.44 -0.30 -15.60 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 14 N -0.86 -25.06 12.84 55.43 0.71 -24.35 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.13 2.06 4.06 -67.12 -0.27 1.79 16 20 C -0.15 -2.41 6.68 -25.83 -0.17 -2.58 16 21 C -0.14 -1.77 8.09 -25.83 -0.21 -1.98 16 22 C -0.15 -2.05 7.64 -25.92 -0.20 -2.25 16 23 C -0.21 -3.40 9.31 -39.38 -0.37 -3.77 16 24 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.12 2.17 5.06 -52.49 -0.27 1.91 16 30 H 0.07 1.27 6.39 -51.93 -0.33 0.94 16 31 H 0.06 1.25 6.06 -51.93 -0.31 0.94 16 32 H 0.34 8.04 7.30 45.56 0.33 8.37 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.10 1.47 5.79 -51.93 -0.30 1.16 16 35 H 0.10 1.87 5.17 -51.93 -0.27 1.60 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.16 7.32 -51.93 -0.38 0.78 16 41 H 0.11 1.67 5.88 -52.49 -0.31 1.36 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -29.77 328.09 -9.27 -39.04 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.50 Total: 12.38 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -3.56 Total: -21.92 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.26 Total: -35.61 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.40 Total: -14.64 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.77 -9.27 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931743734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.012 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds