Wall clock time and date at job start Mon Mar 30 2020 02:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38284 * 119.92655 * 2 1 4 4 C 1.38104 * 120.07725 * 179.70269 * 3 2 1 5 5 C 1.38916 * 119.92232 * 0.27539 * 4 3 2 6 6 N 1.39671 * 120.07189 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00248 * 3.59122 * 6 5 4 8 8 C 1.52996 * 109.47053 * 90.00261 * 7 6 5 9 9 H 1.09003 * 109.47665 * 59.99741 * 8 7 6 10 10 O 1.42905 * 109.46985 * 299.99690 * 8 7 6 11 11 C 1.50706 * 109.47161 * 180.02562 * 8 7 6 12 12 H 1.07999 * 119.99534 * 359.97438 * 11 8 7 13 13 C 1.37877 * 119.99844 * 180.02562 * 11 8 7 14 14 N 1.31519 * 120.00125 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99681 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47235 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47123 * 119.99451 * 15 13 11 18 18 H 1.48508 * 109.46720 * 239.99643 * 15 13 11 19 19 C 1.46505 * 119.99599 * 183.59286 * 6 5 4 20 20 C 1.53781 * 113.61221 * 212.03902 * 19 6 5 21 21 C 1.53953 * 87.01995 * 220.04615 * 20 19 6 22 22 C 1.53781 * 113.61417 * 114.43260 * 19 6 5 23 23 C 1.38910 * 119.85213 * 359.97438 * 5 4 3 24 24 C 1.38112 * 119.92202 * 0.02562 * 23 5 4 25 25 H 1.08998 * 109.47517 * 89.99822 * 1 2 3 26 26 H 1.09001 * 109.47249 * 210.00294 * 1 2 3 27 27 H 1.09000 * 109.47441 * 330.00006 * 1 2 3 28 28 H 1.08002 * 119.95913 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.03789 * 180.29630 * 4 3 2 30 30 H 1.09000 * 109.46728 * 210.00178 * 7 6 5 31 31 H 1.08997 * 109.47251 * 330.00093 * 7 6 5 32 32 H 0.96694 * 114.00349 * 300.00238 * 10 8 7 33 33 H 0.96994 * 119.99442 * 180.02562 * 14 13 11 34 34 H 1.09002 * 112.85055 * 343.23620 * 19 6 5 35 35 H 1.09004 * 113.61630 * 334.57088 * 20 19 6 36 36 H 1.09006 * 113.61399 * 105.46671 * 20 19 6 37 37 H 1.08991 * 113.54249 * 270.81092 * 21 20 19 38 38 H 1.09007 * 113.66253 * 139.92740 * 21 20 19 39 39 H 1.08997 * 113.61262 * 254.52732 * 22 19 6 40 40 H 1.09006 * 113.61406 * 25.34753 * 22 19 6 41 41 H 1.07999 * 120.03919 * 180.02562 * 23 5 4 42 42 H 1.08000 * 119.95691 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2021 0.0062 5 6 4.2740 -0.0001 0.0067 6 7 5.6707 0.0000 0.0135 7 6 6.4028 1.2660 0.0996 8 6 6.6507 1.6128 1.5690 9 1 7.2375 0.8213 2.0352 10 8 5.3987 1.7395 2.2462 11 6 7.4033 2.9155 1.6576 12 1 7.6776 3.4430 0.7560 13 6 7.7423 3.4333 2.8897 14 7 7.4086 2.7906 3.9875 15 14 8.6746 5.0483 2.9995 16 1 8.9279 5.5677 1.6315 17 1 7.8679 6.0345 3.7623 18 1 9.9694 4.8263 3.6919 19 6 6.4035 -1.2661 -0.0656 20 6 7.7423 -1.2512 0.6910 21 6 8.3257 -2.0507 -0.4882 22 6 7.2226 -1.4242 -1.3575 23 6 3.5779 -1.2021 0.0014 24 6 2.1968 -1.1985 -0.0048 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6550 2.1327 -0.0004 29 1 4.1160 2.1385 0.0110 30 1 7.3577 1.1693 -0.4170 31 1 5.8160 2.0575 -0.3666 32 1 4.8233 2.4270 1.8839 33 1 7.6469 3.1551 4.8542 34 1 5.7811 -2.1306 0.1653 35 1 8.1720 -0.2552 0.7986 36 1 7.7203 -1.8072 1.6284 37 1 8.2299 -3.1301 -0.3722 38 1 9.3322 -1.7419 -0.7707 39 1 6.7816 -2.1197 -2.0716 40 1 7.5087 -0.4756 -1.8119 41 1 4.1160 -2.1385 0.0022 42 1 1.6550 -2.1327 -0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931743734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:29 Heat of formation + Delta-G solvation = -16.884475 kcal Electronic energy + Delta-G solvation = -21951.695417 eV Core-core repulsion = 18896.489482 eV Total energy + Delta-G solvation = -3055.205934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06796 -39.36086 -37.75763 -35.55878 -34.22207 -32.42591 -31.70469 -30.19701 -27.33992 -26.95197 -26.50751 -24.64211 -23.49534 -22.48805 -21.24562 -20.11085 -18.97874 -18.52993 -17.02904 -16.68781 -16.26528 -16.11475 -15.93536 -15.46584 -15.29686 -14.96772 -14.48267 -14.40427 -14.22347 -13.88118 -13.53963 -13.26225 -13.13972 -12.90896 -12.86201 -12.77007 -12.70910 -12.39323 -12.20988 -12.03917 -11.84094 -11.60254 -11.47662 -11.22653 -11.01183 -10.68699 -10.47849 -9.99434 -9.66391 -8.17796 -7.80886 -6.40350 0.69824 0.87131 1.37551 1.39467 1.50940 2.29539 2.44913 3.10606 3.12460 3.69731 3.76478 3.85094 4.04236 4.07019 4.17674 4.23983 4.28808 4.46852 4.57980 4.63858 4.71107 4.72362 4.78637 4.87114 4.91947 4.96833 5.00011 5.02303 5.07787 5.08969 5.17942 5.29244 5.32656 5.49212 5.58724 5.61015 5.69103 5.76850 5.95668 6.03725 6.22809 6.51698 6.75966 6.85394 7.33428 7.55449 8.90116 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.006338 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.013677 B = 4417.069378 C = 5875.374005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.168 4.168 3 C -0.081 4.081 4 C -0.204 4.204 5 C 0.214 3.786 6 N -0.610 5.610 7 C 0.113 3.887 8 C 0.218 3.782 9 H 0.029 0.971 10 O -0.570 6.570 11 C -0.586 4.586 12 H 0.060 0.940 13 C 0.029 3.971 14 N -0.899 5.899 15 Si 0.957 3.043 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.123 3.877 20 C -0.164 4.164 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.215 4.215 24 C -0.078 4.078 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.346 0.654 33 H 0.260 0.740 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 -8.637 -11.000 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.170 4.170 3 C -0.100 4.100 4 C -0.226 4.226 5 C 0.111 3.889 6 N -0.317 5.317 7 C -0.010 4.010 8 C 0.159 3.841 9 H 0.046 0.954 10 O -0.374 6.374 11 C -0.624 4.624 12 H 0.078 0.922 13 C -0.174 4.174 14 N -0.536 5.536 15 Si 0.782 3.218 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.206 1.206 19 C 0.019 3.981 20 C -0.202 4.202 21 C -0.160 4.160 22 C -0.182 4.182 23 C -0.238 4.238 24 C -0.097 4.097 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.190 0.810 33 H 0.069 0.931 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.355 -9.136 -10.461 15.273 hybrid contribution 0.701 1.575 0.372 1.763 sum -5.655 -7.561 -10.088 13.817 Atomic orbital electron populations 1.20623 0.89724 1.02731 1.02284 1.19924 0.97166 0.92735 1.07134 1.20961 0.92926 0.98378 0.97703 1.20750 0.94954 0.96394 1.10534 1.18078 0.83525 0.94444 0.92843 1.46639 1.01857 1.05516 1.77680 1.21982 0.95847 0.84903 0.98262 1.19772 0.82283 0.94361 0.87639 0.95359 1.86571 1.30208 1.58481 1.62138 1.22068 1.38742 1.08837 0.92800 0.92153 1.25857 0.95580 1.00492 0.95470 1.70240 1.45483 1.39916 0.97985 0.85557 0.78207 0.79566 0.78516 1.18553 1.20713 1.20594 1.22716 0.91474 0.86840 0.97033 1.23541 0.97201 1.01001 0.98500 1.22702 0.98517 1.00150 0.94653 1.23354 0.96972 1.01180 0.96734 1.20808 0.95014 0.96099 1.11844 1.20982 0.92962 0.98218 0.97506 0.91024 0.91243 0.91812 0.85302 0.87307 0.91137 0.91688 0.80981 0.93142 0.86990 0.91247 0.92357 0.88052 0.90552 0.89663 0.90965 0.85568 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.94 10.01 71.23 0.71 -1.23 16 2 C -0.17 -4.61 5.88 -19.84 -0.12 -4.73 16 3 C -0.08 -2.49 9.69 22.25 0.22 -2.27 16 4 C -0.20 -7.25 7.83 22.40 0.18 -7.07 16 5 C 0.21 7.68 6.14 38.22 0.23 7.92 16 6 N -0.61 -22.18 2.75 -670.45 -1.85 -24.02 16 7 C 0.11 4.62 4.10 86.38 0.35 4.97 16 8 C 0.22 11.04 2.76 29.85 0.08 11.12 16 9 H 0.03 1.63 6.15 -2.39 -0.01 1.61 16 10 O -0.57 -30.46 11.44 -148.98 -1.70 -32.16 16 11 C -0.59 -31.81 8.76 25.60 0.22 -31.59 16 12 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 13 C 0.03 1.59 5.40 84.65 0.46 2.05 16 14 N -0.90 -54.21 12.84 21.45 0.28 -53.94 16 15 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 16 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 C 0.12 3.79 4.06 45.52 0.18 3.98 16 20 C -0.16 -5.31 6.68 31.18 0.21 -5.10 16 21 C -0.12 -2.87 8.09 31.18 0.25 -2.62 16 22 C -0.14 -3.59 7.64 31.12 0.24 -3.35 16 23 C -0.22 -6.75 9.31 22.40 0.21 -6.54 16 24 C -0.08 -2.16 9.69 22.25 0.22 -1.94 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 28 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.11 4.03 5.06 -2.91 -0.01 4.02 16 30 H 0.07 2.77 6.39 -2.39 -0.02 2.75 16 31 H 0.06 2.61 6.06 -2.39 -0.01 2.59 16 32 H 0.35 17.06 7.30 -74.06 -0.54 16.52 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.11 3.14 5.79 -2.39 -0.01 3.12 16 35 H 0.07 2.70 5.17 -2.38 -0.01 2.69 16 36 H 0.06 1.93 8.14 -2.38 -0.02 1.92 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.97 7.32 -2.38 -0.02 1.95 16 41 H 0.13 3.50 5.88 -2.91 -0.02 3.48 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -65.18 328.09 2.88 -62.29 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.48 Total: 38.87 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.65 Total: -36.40 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.57 Total: -77.96 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -1.70 Total: -32.16 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.18 2.88 -62.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931743734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.409 kcal (2) G-P(sol) polarization free energy of solvation -65.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds