Wall clock time and date at job start Mon Mar 30 2020 02:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99741 * 2 1 4 4 C 1.38217 * 119.99951 * 180.34557 * 3 2 1 5 5 C 1.38258 * 119.99815 * 359.90410 * 4 3 2 6 6 C 1.38214 * 119.99774 * 0.05246 * 5 4 3 7 7 C 1.38208 * 120.00030 * 180.27342 * 2 1 3 8 8 C 1.50700 * 120.00034 * 359.70158 * 7 2 1 9 9 H 1.09004 * 109.47101 * 5.05569 * 8 7 2 10 10 C 1.53006 * 109.47213 * 125.05353 * 8 7 2 11 11 C 1.50699 * 109.47262 * 245.05419 * 8 7 2 12 12 O 1.21278 * 120.00106 * 0.02562 * 11 8 7 13 13 N 1.34779 * 120.00097 * 180.02562 * 11 8 7 14 14 C 1.46509 * 119.99794 * 359.97438 * 13 11 8 15 15 C 1.46497 * 120.00098 * 180.02562 * 13 11 8 16 16 H 1.08999 * 109.47036 * 359.97438 * 15 13 11 17 17 C 1.52996 * 109.46816 * 239.99802 * 15 13 11 18 18 C 1.50701 * 109.47157 * 119.99968 * 15 13 11 19 19 H 1.07998 * 120.00089 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99768 * 180.02562 * 18 15 13 21 21 N 1.31517 * 120.00324 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99998 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46788 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47368 * 119.99329 * 22 20 18 25 25 H 1.48499 * 109.47186 * 239.99798 * 22 20 18 26 26 H 1.08998 * 109.47177 * 263.81181 * 1 2 3 27 27 H 1.09004 * 109.47040 * 23.81518 * 1 2 3 28 28 H 1.09002 * 109.47125 * 143.81203 * 1 2 3 29 29 H 1.08006 * 120.00191 * 0.28045 * 3 2 1 30 30 H 1.08001 * 119.99849 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00051 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.99787 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46911 * 60.00099 * 10 8 7 34 34 H 1.08997 * 109.47206 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47420 * 300.00570 * 10 8 7 36 36 H 1.08996 * 109.46946 * 90.00179 * 14 13 11 37 37 H 1.09000 * 109.47065 * 210.00055 * 14 13 11 38 38 H 1.08994 * 109.47124 * 330.00246 * 14 13 11 39 39 H 1.09003 * 109.47364 * 59.99913 * 17 15 13 40 40 H 1.09005 * 109.47166 * 179.97438 * 17 15 13 41 41 H 1.08999 * 109.47339 * 299.99840 * 17 15 13 42 42 H 0.96998 * 120.00273 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0072 5 6 4.2717 0.0001 -0.0124 6 6 3.5806 -1.1969 -0.0115 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0051 9 1 0.3760 -2.3047 -0.0905 10 6 1.9018 -3.3554 -1.1900 11 6 1.7182 -3.2395 1.2803 12 8 2.4523 -2.7530 2.1141 13 7 1.1471 -4.4397 1.5033 14 6 0.2598 -5.0272 0.4963 15 6 1.4126 -5.1564 2.7532 16 1 2.0892 -4.5678 3.3727 17 6 2.0557 -6.5085 2.4389 18 6 0.1172 -5.3756 3.4914 19 1 -0.8110 -5.0174 3.0714 20 6 0.1172 -6.0336 4.7031 21 7 1.2475 -6.4703 5.2143 22 14 -1.4883 -6.3049 5.6186 23 1 -2.6084 -5.7220 4.8369 24 1 -1.7154 -7.7613 5.7991 25 1 -1.4176 -5.6464 6.9477 26 1 -0.3633 -0.1108 1.0217 27 1 -0.3633 0.9402 -0.4150 28 1 -0.3633 -0.8294 -0.6068 29 1 1.6582 2.1327 0.0046 30 1 4.1204 2.1328 -0.0076 31 1 5.3517 0.0001 -0.0177 32 1 4.1206 -2.1322 -0.0160 33 1 2.9704 -3.5528 -1.1046 34 1 1.3572 -4.2995 -1.1893 35 1 1.7040 -2.8220 -2.1197 36 1 0.8448 -5.6374 -0.1917 37 1 -0.4871 -5.6497 0.9890 38 1 -0.2384 -4.2315 -0.0575 39 1 2.9926 -6.3500 1.9049 40 1 2.2537 -7.0416 3.3688 41 1 1.3794 -7.0973 1.8191 42 1 1.2474 -6.9335 6.0666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:06 Heat of formation + Delta-G solvation = -13.947673 kcal Electronic energy + Delta-G solvation = -21872.460130 eV Core-core repulsion = 18817.381545 eV Total energy + Delta-G solvation = -3055.078585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09722 -38.47288 -35.30167 -34.19636 -32.76171 -32.37765 -29.86121 -28.65097 -26.73037 -26.26451 -25.21140 -24.39315 -22.26575 -21.24588 -20.09502 -18.19993 -16.71448 -16.49191 -16.02060 -15.47089 -15.08233 -14.67543 -14.33370 -14.17589 -13.57091 -13.54156 -12.97412 -12.88093 -12.77297 -12.50143 -12.31847 -12.07552 -11.99501 -11.70188 -11.57648 -11.37210 -11.14429 -11.02491 -10.83607 -10.75186 -10.65001 -10.39188 -10.22513 -10.16493 -9.16448 -8.84540 -8.55270 -8.42784 -8.33346 -7.54683 -6.06571 -4.14456 1.54231 1.62442 3.25839 3.33709 3.36181 3.44930 3.83907 4.14500 4.41329 4.78232 4.92006 5.08553 5.10211 5.24192 5.26753 5.35950 5.38223 5.41165 5.65094 5.68441 5.74303 5.83042 5.86396 5.93360 5.95422 6.06247 6.17806 6.26388 6.31056 6.42711 6.65593 6.71298 6.76953 6.84983 6.87901 7.08398 7.21379 7.45876 7.56361 7.73306 8.03650 8.21723 8.56782 8.85248 9.11325 9.52224 10.98747 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.004768 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.514747 B = 5871.263108 C = 6025.552831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.081 4.081 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.053 4.053 8 C -0.080 4.080 9 H 0.102 0.898 10 C -0.151 4.151 11 C 0.509 3.491 12 O -0.544 6.544 13 N -0.592 5.592 14 C 0.082 3.918 15 C 0.258 3.742 16 H 0.062 0.938 17 C -0.145 4.145 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.010 0.990 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 9.091 -14.169 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.147 4.147 6 C -0.101 4.101 7 C -0.054 4.054 8 C -0.102 4.102 9 H 0.120 0.880 10 C -0.208 4.208 11 C 0.296 3.704 12 O -0.422 6.422 13 N -0.324 5.324 14 C -0.062 4.062 15 C 0.157 3.843 16 H 0.080 0.920 17 C -0.204 4.204 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.029 0.971 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.510 9.215 -13.543 16.389 hybrid contribution -0.869 -0.252 0.623 1.099 sum -0.359 8.963 -12.921 15.729 Atomic orbital electron populations 1.20859 0.91585 1.02290 1.02702 1.19709 0.95822 0.92637 0.99963 1.20895 0.94249 0.97014 1.02214 1.21032 0.94276 0.97763 1.01031 1.21047 0.99589 0.92526 1.01499 1.20899 0.93594 0.97986 0.97583 1.19209 0.93605 0.92952 0.99607 1.20410 1.01328 0.93144 0.95279 0.88005 1.22038 1.02405 1.00200 0.96188 1.20198 0.80976 0.81679 0.87593 1.90664 1.37873 1.66877 1.46763 1.48187 1.45245 1.18687 1.20240 1.21738 0.94456 0.98315 0.91684 1.18923 0.96690 0.89161 0.79477 0.91984 1.22073 0.96454 0.99777 1.02059 1.21360 0.93213 1.37025 1.04714 0.92231 1.24897 0.96504 0.95360 0.97050 1.69892 1.25235 1.38511 1.18939 0.86453 0.83443 0.77760 0.79799 1.19825 1.20940 1.20933 0.90930 0.91755 0.91304 0.86463 0.86551 0.86444 0.86390 0.92165 0.90465 0.91990 0.93599 0.90246 0.92718 0.97099 0.88916 0.95204 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.26 36.01 0.33 -1.06 16 2 C -0.08 -1.16 5.88 -104.63 -0.62 -1.78 16 3 C -0.13 -1.64 9.68 -39.58 -0.38 -2.02 16 4 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 5 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 6 C -0.08 -1.30 8.20 -39.59 -0.32 -1.63 16 7 C -0.05 -0.85 4.32 -104.63 -0.45 -1.30 16 8 C -0.08 -1.25 1.91 -92.92 -0.18 -1.43 16 9 H 0.10 1.43 4.81 -51.93 -0.25 1.18 16 10 C -0.15 -1.92 8.58 37.16 0.32 -1.60 16 11 C 0.51 10.66 6.97 -10.98 -0.08 10.58 16 12 O -0.54 -13.70 14.70 5.56 0.08 -13.62 16 13 N -0.59 -12.60 2.75 -175.26 -0.48 -13.09 16 14 C 0.08 1.35 7.80 59.85 0.47 1.82 16 15 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 16 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 17 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 18 C -0.52 -14.19 7.99 -34.44 -0.28 -14.47 16 19 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 22 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 28 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 29 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.87 7.28 -52.48 -0.38 1.49 16 33 H 0.06 0.80 7.12 -51.93 -0.37 0.43 16 34 H 0.08 0.92 4.53 -51.93 -0.24 0.68 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.66 6.95 -51.93 -0.36 0.30 16 37 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 38 H 0.05 0.73 6.01 -51.93 -0.31 0.42 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -31.84 330.23 -7.89 -39.73 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.15 Total: 2.69 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.92 Total: -12.10 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.15 Total: -37.73 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.84 -7.89 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.786 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds