Wall clock time and date at job start Mon Mar 30 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38253 * 119.99741 * 2 1 4 4 C 1.38217 * 119.99951 * 180.34557 * 3 2 1 5 5 C 1.38258 * 119.99815 * 359.90410 * 4 3 2 6 6 C 1.38214 * 119.99774 * 0.05246 * 5 4 3 7 7 C 1.38208 * 120.00030 * 180.27342 * 2 1 3 8 8 C 1.50700 * 120.00034 * 359.70158 * 7 2 1 9 9 H 1.09004 * 109.47101 * 5.05569 * 8 7 2 10 10 C 1.53006 * 109.47213 * 125.05353 * 8 7 2 11 11 C 1.50699 * 109.47262 * 245.05419 * 8 7 2 12 12 O 1.21278 * 120.00106 * 0.02562 * 11 8 7 13 13 N 1.34779 * 120.00097 * 180.02562 * 11 8 7 14 14 C 1.46509 * 119.99794 * 359.97438 * 13 11 8 15 15 C 1.46497 * 120.00098 * 180.02562 * 13 11 8 16 16 H 1.08999 * 109.47036 * 359.97438 * 15 13 11 17 17 C 1.52996 * 109.46816 * 239.99802 * 15 13 11 18 18 C 1.50701 * 109.47157 * 119.99968 * 15 13 11 19 19 H 1.07998 * 120.00089 * 0.02562 * 18 15 13 20 20 C 1.37879 * 119.99768 * 180.02562 * 18 15 13 21 21 N 1.31517 * 120.00324 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99998 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46788 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47368 * 119.99329 * 22 20 18 25 25 H 1.48499 * 109.47186 * 239.99798 * 22 20 18 26 26 H 1.08998 * 109.47177 * 263.81181 * 1 2 3 27 27 H 1.09004 * 109.47040 * 23.81518 * 1 2 3 28 28 H 1.09002 * 109.47125 * 143.81203 * 1 2 3 29 29 H 1.08006 * 120.00191 * 0.28045 * 3 2 1 30 30 H 1.08001 * 119.99849 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.00051 * 180.02562 * 5 4 3 32 32 H 1.08006 * 119.99787 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.46911 * 60.00099 * 10 8 7 34 34 H 1.08997 * 109.47206 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47420 * 300.00570 * 10 8 7 36 36 H 1.08996 * 109.46946 * 90.00179 * 14 13 11 37 37 H 1.09000 * 109.47065 * 210.00055 * 14 13 11 38 38 H 1.08994 * 109.47124 * 330.00246 * 14 13 11 39 39 H 1.09003 * 109.47364 * 59.99913 * 17 15 13 40 40 H 1.09005 * 109.47166 * 179.97438 * 17 15 13 41 41 H 1.08999 * 109.47339 * 299.99840 * 17 15 13 42 42 H 0.96998 * 120.00273 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0072 5 6 4.2717 0.0001 -0.0124 6 6 3.5806 -1.1969 -0.0115 7 6 2.1981 -1.1969 -0.0057 8 6 1.4446 -2.5020 -0.0051 9 1 0.3760 -2.3047 -0.0905 10 6 1.9018 -3.3554 -1.1900 11 6 1.7182 -3.2395 1.2803 12 8 2.4523 -2.7530 2.1141 13 7 1.1471 -4.4397 1.5033 14 6 0.2598 -5.0272 0.4963 15 6 1.4126 -5.1564 2.7532 16 1 2.0892 -4.5678 3.3727 17 6 2.0557 -6.5085 2.4389 18 6 0.1172 -5.3756 3.4914 19 1 -0.8110 -5.0174 3.0714 20 6 0.1172 -6.0336 4.7031 21 7 1.2475 -6.4703 5.2143 22 14 -1.4883 -6.3049 5.6186 23 1 -2.6084 -5.7220 4.8369 24 1 -1.7154 -7.7613 5.7991 25 1 -1.4176 -5.6464 6.9477 26 1 -0.3633 -0.1108 1.0217 27 1 -0.3633 0.9402 -0.4150 28 1 -0.3633 -0.8294 -0.6068 29 1 1.6582 2.1327 0.0046 30 1 4.1204 2.1328 -0.0076 31 1 5.3517 0.0001 -0.0177 32 1 4.1206 -2.1322 -0.0160 33 1 2.9704 -3.5528 -1.1046 34 1 1.3572 -4.2995 -1.1893 35 1 1.7040 -2.8220 -2.1197 36 1 0.8448 -5.6374 -0.1917 37 1 -0.4871 -5.6497 0.9890 38 1 -0.2384 -4.2315 -0.0575 39 1 2.9926 -6.3500 1.9049 40 1 2.2537 -7.0416 3.3688 41 1 1.3794 -7.0973 1.8191 42 1 1.2474 -6.9335 6.0666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:05 Heat of formation + Delta-G solvation = -31.892422 kcal Electronic energy + Delta-G solvation = -21873.238273 eV Core-core repulsion = 18817.381545 eV Total energy + Delta-G solvation = -3055.856728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44449 -39.82126 -37.10951 -35.57098 -34.48058 -33.49610 -31.48874 -30.00661 -27.82835 -27.59472 -27.30683 -25.61675 -23.72532 -22.45291 -21.51425 -19.75972 -18.47095 -18.05982 -17.36235 -17.08338 -16.42691 -16.20421 -15.82611 -15.47840 -14.92637 -14.65538 -14.44731 -14.27767 -13.98472 -13.90610 -13.61779 -13.38002 -13.23508 -13.10552 -12.99656 -12.82455 -12.73264 -12.64424 -12.45604 -12.30313 -12.16174 -12.09664 -11.76169 -11.50582 -11.17886 -10.61067 -10.40233 -9.63137 -9.44321 -9.28518 -8.14790 -6.31458 0.46834 0.55152 1.40177 1.41995 1.53266 1.84904 2.32387 2.50212 2.94072 3.13201 3.61785 3.79011 4.00923 4.08782 4.16218 4.24973 4.30531 4.47841 4.50794 4.66398 4.68744 4.75283 4.79106 4.83495 4.86315 4.90731 4.94878 4.98128 5.06414 5.07084 5.19373 5.29639 5.33466 5.48491 5.59874 5.63323 5.66394 5.68097 5.79081 6.05203 6.16780 6.18786 6.77294 6.86813 7.33325 7.51888 8.89814 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.004768 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.514747 B = 5871.263108 C = 6025.552831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.123 4.123 5 C -0.141 4.141 6 C -0.106 4.106 7 C -0.078 4.078 8 C -0.067 4.067 9 H 0.123 0.877 10 C -0.146 4.146 11 C 0.500 3.500 12 O -0.599 6.599 13 N -0.599 5.599 14 C 0.076 3.924 15 C 0.262 3.738 16 H 0.004 0.996 17 C -0.130 4.130 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.966 3.034 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.287 1.287 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.017 0.983 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 10.116 -16.171 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.141 4.141 5 C -0.159 4.159 6 C -0.125 4.125 7 C -0.078 4.078 8 C -0.087 4.087 9 H 0.140 0.860 10 C -0.203 4.203 11 C 0.288 3.712 12 O -0.481 6.481 13 N -0.329 5.329 14 C -0.066 4.066 15 C 0.159 3.841 16 H 0.022 0.978 17 C -0.189 4.189 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.186 4.186 21 N -0.558 5.558 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.213 1.213 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.449 10.227 -15.595 18.706 hybrid contribution -0.193 -0.502 1.248 1.359 sum -1.642 9.725 -14.347 17.410 Atomic orbital electron populations 1.20905 0.89890 1.04299 1.02260 1.20081 0.97283 0.92531 0.99561 1.21315 0.94621 0.97790 1.01072 1.21428 0.94622 0.98451 0.99597 1.21332 1.00660 0.92486 1.01374 1.20977 0.94143 0.98235 0.99113 1.19374 0.93750 0.93664 1.01030 1.20374 1.02543 0.92909 0.92910 0.85989 1.22046 1.01735 1.00520 0.95975 1.21221 0.79724 0.81322 0.88898 1.90627 1.40214 1.68133 1.49083 1.48187 1.46068 1.18918 1.19749 1.22035 0.93956 0.99650 0.90936 1.18502 0.95280 0.89183 0.81090 0.97812 1.21851 0.97088 0.98867 1.01058 1.21617 0.93619 1.36930 1.05276 0.91939 1.25762 0.99826 0.95097 0.97927 1.70040 1.27389 1.39101 1.19297 0.85395 0.79507 0.77988 0.78044 1.18686 1.19929 1.21329 0.92303 0.89182 0.90106 0.83644 0.83584 0.84854 0.87963 0.93388 0.89323 0.89164 0.91107 0.91325 0.89090 0.96382 0.91579 0.93296 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.26 71.24 0.66 -1.82 16 2 C -0.09 -2.55 5.88 -19.87 -0.12 -2.67 16 3 C -0.13 -3.09 9.68 22.27 0.22 -2.88 16 4 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 5 C -0.14 -3.84 10.05 22.27 0.22 -3.61 16 6 C -0.11 -3.42 8.20 22.27 0.18 -3.24 16 7 C -0.08 -2.42 4.32 -19.87 -0.09 -2.51 16 8 C -0.07 -2.00 1.91 -12.28 -0.02 -2.02 16 9 H 0.12 3.12 4.81 -2.39 -0.01 3.11 16 10 C -0.15 -3.39 8.58 71.98 0.62 -2.77 16 11 C 0.50 21.29 6.97 87.66 0.61 21.90 16 12 O -0.60 -31.84 14.70 -3.02 -0.04 -31.89 16 13 N -0.60 -25.61 2.75 -826.80 -2.28 -27.89 16 14 C 0.08 2.35 7.80 127.77 1.00 3.35 16 15 C 0.26 13.91 2.64 44.24 0.12 14.02 16 16 H 0.00 0.25 6.90 -2.39 -0.02 0.23 16 17 C -0.13 -6.39 8.97 71.98 0.65 -5.75 16 18 C -0.54 -29.43 7.99 25.60 0.20 -29.22 16 19 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 20 C 0.01 0.73 5.30 84.65 0.45 1.18 16 21 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 22 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.41 8.04 -2.39 -0.02 1.39 16 28 H 0.08 1.47 6.36 -2.39 -0.02 1.46 16 29 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 30 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.10 3.46 7.28 -2.91 -0.02 3.44 16 33 H 0.05 1.23 7.12 -2.39 -0.02 1.22 16 34 H 0.09 1.83 4.53 -2.39 -0.01 1.82 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.85 6.95 -2.39 -0.02 1.83 16 37 H 0.07 2.29 7.02 -2.39 -0.02 2.27 16 38 H 0.09 2.13 6.01 -2.39 -0.01 2.12 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 3.61 6.07 -2.38 -0.01 3.60 16 41 H 0.05 2.15 7.67 -2.39 -0.02 2.14 16 42 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -73.01 330.23 5.88 -67.13 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 1.01 Total: 19.60 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.92 Total: -18.73 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.03 Total: -81.49 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.04 Total: -31.89 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -73.01 5.88 -67.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.240 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds