Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38264 * 119.99916 * 2 1 4 4 C 1.38215 * 119.99708 * 180.22979 * 3 2 1 5 5 C 1.38258 * 119.99928 * 359.80945 * 4 3 2 6 6 C 1.38211 * 120.00242 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00092 * 179.78919 * 2 1 3 8 8 C 1.50702 * 119.99774 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47175 * 353.92891 * 8 7 2 10 10 C 1.53003 * 109.47058 * 233.92387 * 8 7 2 11 11 C 1.50704 * 109.46673 * 113.92824 * 8 7 2 12 12 O 1.21277 * 120.00249 * 359.97438 * 11 8 7 13 13 N 1.34778 * 119.99684 * 180.02562 * 11 8 7 14 14 C 1.46502 * 120.00175 * 359.97438 * 13 11 8 15 15 C 1.46496 * 119.99745 * 179.97438 * 13 11 8 16 16 H 1.09003 * 109.47354 * 359.97438 * 15 13 11 17 17 C 1.52998 * 109.47124 * 239.99919 * 15 13 11 18 18 C 1.50705 * 109.47290 * 120.00237 * 15 13 11 19 19 H 1.08001 * 119.99759 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00150 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00030 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99934 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46760 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47091 * 119.99596 * 22 20 18 25 25 H 1.48493 * 109.46923 * 239.99796 * 22 20 18 26 26 H 1.09005 * 109.47539 * 264.48805 * 1 2 3 27 27 H 1.08998 * 109.47252 * 24.48243 * 1 2 3 28 28 H 1.09001 * 109.47242 * 144.48549 * 1 2 3 29 29 H 1.07998 * 119.99961 * 0.06583 * 3 2 1 30 30 H 1.07996 * 119.99770 * 179.82931 * 4 3 2 31 31 H 1.08006 * 120.00061 * 179.97438 * 5 4 3 32 32 H 1.08008 * 120.00254 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47539 * 300.00281 * 10 8 7 34 34 H 1.08998 * 109.47109 * 60.00580 * 10 8 7 35 35 H 1.08998 * 109.46821 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47044 * 269.99976 * 14 13 11 37 37 H 1.09007 * 109.46767 * 30.00268 * 14 13 11 38 38 H 1.09000 * 109.46956 * 150.00092 * 14 13 11 39 39 H 1.09002 * 109.47319 * 299.99771 * 17 15 13 40 40 H 1.09008 * 109.47092 * 180.02562 * 17 15 13 41 41 H 1.09001 * 109.47616 * 60.00353 * 17 15 13 42 42 H 0.96998 * 120.00136 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0056 6 6 3.5806 -1.1970 -0.0011 7 6 2.1980 -1.1969 0.0044 8 6 1.4445 -2.5020 0.0098 9 1 0.3779 -2.3053 0.1181 10 6 1.9256 -3.3639 1.1789 11 6 1.6919 -3.2302 -1.2862 12 8 2.4091 -2.7377 -2.1312 13 7 1.1154 -4.4283 -1.5067 14 6 0.2486 -5.0230 -0.4863 15 6 1.3555 -5.1359 -2.7668 16 1 2.0195 -4.5429 -3.3957 17 6 0.0256 -5.3521 -3.4917 18 6 1.9938 -6.4706 -2.4797 19 1 2.2003 -6.7623 -1.4606 20 6 2.3150 -7.3187 -3.5182 21 7 2.0639 -6.9632 -4.7592 22 14 3.1068 -8.9728 -3.1624 23 1 3.2832 -9.1320 -1.6965 24 1 2.2358 -10.0596 -3.6776 25 1 4.4314 -9.0413 -3.8302 26 1 -0.3634 -0.0987 1.0229 27 1 -0.3633 0.9352 -0.4259 28 1 -0.3634 -0.8365 -0.5970 29 1 1.6582 2.1327 0.0011 30 1 4.1203 2.1326 -0.0076 31 1 5.3517 -0.0001 -0.0098 32 1 4.1206 -2.1324 -0.0013 33 1 2.9922 -3.5606 1.0705 34 1 1.7466 -2.8372 2.1163 35 1 1.3808 -4.3080 1.1825 36 1 0.8472 -5.6389 0.1848 37 1 -0.2376 -4.2313 0.0838 38 1 -0.5087 -5.6413 -0.9683 39 1 -0.6388 -5.9449 -2.8630 40 1 0.2042 -5.8790 -4.4291 41 1 -0.4362 -4.3868 -3.6994 42 1 2.2902 -7.5598 -5.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -13.588762 kcal Electronic energy + Delta-G solvation = -21878.007178 eV Core-core repulsion = 18822.944156 eV Total energy + Delta-G solvation = -3055.063022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.09795 -38.47399 -35.30951 -34.18181 -32.76373 -32.39146 -29.86530 -28.62416 -26.72878 -26.28716 -25.23234 -24.39420 -22.25266 -21.24012 -20.05489 -18.22970 -16.75729 -16.46140 -15.95370 -15.43693 -15.12069 -14.66262 -14.33890 -14.21827 -13.64305 -13.44691 -13.07508 -12.92064 -12.79492 -12.50810 -12.31001 -12.04704 -11.94491 -11.67452 -11.55800 -11.37383 -11.14596 -11.05704 -10.78701 -10.74424 -10.60742 -10.47801 -10.21724 -10.13722 -9.14332 -8.86865 -8.55337 -8.42740 -8.32799 -7.54568 -6.06104 -4.13965 1.53855 1.62526 3.26019 3.33762 3.36283 3.44631 3.83560 4.15232 4.41163 4.78878 4.91346 5.08597 5.11030 5.24007 5.28192 5.35963 5.39006 5.43845 5.61780 5.65852 5.74409 5.80123 5.89668 5.91984 5.99576 6.05293 6.21142 6.25758 6.30423 6.39844 6.65420 6.72252 6.77949 6.83521 6.88166 7.07614 7.21476 7.46814 7.55215 7.73473 8.03633 8.21678 8.56845 8.85879 9.11061 9.52828 10.99207 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004733 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.733064 B = 5914.493496 C = 6147.588282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.128 4.128 6 C -0.082 4.082 7 C -0.053 4.053 8 C -0.079 4.079 9 H 0.100 0.900 10 C -0.151 4.151 11 C 0.508 3.492 12 O -0.544 6.544 13 N -0.593 5.593 14 C 0.085 3.915 15 C 0.257 3.743 16 H 0.063 0.937 17 C -0.147 4.147 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.093 0.907 41 H 0.011 0.989 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 11.120 12.369 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.101 4.101 7 C -0.053 4.053 8 C -0.100 4.100 9 H 0.118 0.882 10 C -0.208 4.208 11 C 0.294 3.706 12 O -0.422 6.422 13 N -0.324 5.324 14 C -0.059 4.059 15 C 0.157 3.843 16 H 0.080 0.920 17 C -0.205 4.205 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.905 11.277 11.707 16.512 hybrid contribution 0.440 -1.022 0.078 1.116 sum -2.465 10.254 11.785 15.815 Atomic orbital electron populations 1.20830 0.91636 1.02803 1.02031 1.19701 0.95770 0.92636 1.00211 1.20889 0.94246 0.96986 1.02268 1.21032 0.94278 0.97762 1.01055 1.21061 0.99645 0.92511 1.01348 1.20940 0.93644 0.98092 0.97375 1.19223 0.93620 0.92925 0.99569 1.20407 1.01078 0.93170 0.95353 0.88179 1.22030 1.02576 1.00081 0.96138 1.20221 0.80756 0.81687 0.87887 1.90665 1.38147 1.66819 1.46521 1.48186 1.46359 1.18429 1.19429 1.21702 0.94553 0.97905 0.91737 1.18929 0.94048 0.91689 0.79595 0.91959 1.22095 0.97342 0.97914 1.03190 1.21354 1.40268 1.01176 0.93355 0.92269 1.24896 0.95578 0.98422 0.94938 1.69890 1.47426 1.36822 0.98509 0.86454 0.79103 0.83550 0.78364 1.19829 1.20954 1.20950 0.91283 0.91675 0.91278 0.86490 0.86553 0.86411 0.86244 0.92009 0.92057 0.90400 0.92981 0.92844 0.91024 0.95126 0.88840 0.97037 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.13 36.00 0.33 -0.99 16 2 C -0.08 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.13 -1.62 9.68 -39.58 -0.38 -2.00 16 4 C -0.12 -1.58 10.05 -39.58 -0.40 -1.97 16 5 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 6 C -0.08 -1.33 8.25 -39.58 -0.33 -1.65 16 7 C -0.05 -0.84 4.31 -104.62 -0.45 -1.29 16 8 C -0.08 -1.23 1.82 -92.92 -0.17 -1.40 16 9 H 0.10 1.35 4.99 -51.93 -0.26 1.09 16 10 C -0.15 -2.01 8.57 37.16 0.32 -1.69 16 11 C 0.51 10.62 6.97 -10.98 -0.08 10.54 16 12 O -0.54 -13.69 14.74 5.56 0.08 -13.61 16 13 N -0.59 -12.60 2.75 -175.26 -0.48 -13.08 16 14 C 0.08 1.40 8.04 59.85 0.48 1.88 16 15 C 0.26 6.62 2.64 -69.08 -0.18 6.43 16 16 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -3.53 8.95 37.16 0.33 -3.20 16 18 C -0.52 -14.14 8.37 -34.44 -0.29 -14.43 16 19 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 28 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.12 1.98 7.24 -52.48 -0.38 1.60 16 33 H 0.06 0.88 7.09 -51.93 -0.37 0.52 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.99 4.53 -51.93 -0.24 0.75 16 36 H 0.05 0.82 6.95 -51.93 -0.36 0.46 16 37 H 0.05 0.69 6.01 -51.93 -0.31 0.38 16 38 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 39 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 40 H 0.09 2.47 6.07 -51.92 -0.32 2.16 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -31.83 329.70 -7.85 -39.68 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.10 Total: 2.73 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.92 Total: -12.10 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.15 Total: -37.74 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.83 -7.85 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.089 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds