Wall clock time and date at job start Mon Mar 30 2020 02:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38264 * 119.99916 * 2 1 4 4 C 1.38215 * 119.99708 * 180.22979 * 3 2 1 5 5 C 1.38258 * 119.99928 * 359.80945 * 4 3 2 6 6 C 1.38211 * 120.00242 * 359.97438 * 5 4 3 7 7 C 1.38213 * 120.00092 * 179.78919 * 2 1 3 8 8 C 1.50702 * 119.99774 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47175 * 353.92891 * 8 7 2 10 10 C 1.53003 * 109.47058 * 233.92387 * 8 7 2 11 11 C 1.50704 * 109.46673 * 113.92824 * 8 7 2 12 12 O 1.21277 * 120.00249 * 359.97438 * 11 8 7 13 13 N 1.34778 * 119.99684 * 180.02562 * 11 8 7 14 14 C 1.46502 * 120.00175 * 359.97438 * 13 11 8 15 15 C 1.46496 * 119.99745 * 179.97438 * 13 11 8 16 16 H 1.09003 * 109.47354 * 359.97438 * 15 13 11 17 17 C 1.52998 * 109.47124 * 239.99919 * 15 13 11 18 18 C 1.50705 * 109.47290 * 120.00237 * 15 13 11 19 19 H 1.08001 * 119.99759 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00150 * 180.02562 * 18 15 13 21 21 N 1.31512 * 120.00030 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99934 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.46760 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47091 * 119.99596 * 22 20 18 25 25 H 1.48493 * 109.46923 * 239.99796 * 22 20 18 26 26 H 1.09005 * 109.47539 * 264.48805 * 1 2 3 27 27 H 1.08998 * 109.47252 * 24.48243 * 1 2 3 28 28 H 1.09001 * 109.47242 * 144.48549 * 1 2 3 29 29 H 1.07998 * 119.99961 * 0.06583 * 3 2 1 30 30 H 1.07996 * 119.99770 * 179.82931 * 4 3 2 31 31 H 1.08006 * 120.00061 * 179.97438 * 5 4 3 32 32 H 1.08008 * 120.00254 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47539 * 300.00281 * 10 8 7 34 34 H 1.08998 * 109.47109 * 60.00580 * 10 8 7 35 35 H 1.08998 * 109.46821 * 180.02562 * 10 8 7 36 36 H 1.08996 * 109.47044 * 269.99976 * 14 13 11 37 37 H 1.09007 * 109.46767 * 30.00268 * 14 13 11 38 38 H 1.09000 * 109.46956 * 150.00092 * 14 13 11 39 39 H 1.09002 * 109.47319 * 299.99771 * 17 15 13 40 40 H 1.09008 * 109.47092 * 180.02562 * 17 15 13 41 41 H 1.09001 * 109.47616 * 60.00353 * 17 15 13 42 42 H 0.96998 * 120.00136 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0056 6 6 3.5806 -1.1970 -0.0011 7 6 2.1980 -1.1969 0.0044 8 6 1.4445 -2.5020 0.0098 9 1 0.3779 -2.3053 0.1181 10 6 1.9256 -3.3639 1.1789 11 6 1.6919 -3.2302 -1.2862 12 8 2.4091 -2.7377 -2.1312 13 7 1.1154 -4.4283 -1.5067 14 6 0.2486 -5.0230 -0.4863 15 6 1.3555 -5.1359 -2.7668 16 1 2.0195 -4.5429 -3.3957 17 6 0.0256 -5.3521 -3.4917 18 6 1.9938 -6.4706 -2.4797 19 1 2.2003 -6.7623 -1.4606 20 6 2.3150 -7.3187 -3.5182 21 7 2.0639 -6.9632 -4.7592 22 14 3.1068 -8.9728 -3.1624 23 1 3.2832 -9.1320 -1.6965 24 1 2.2358 -10.0596 -3.6776 25 1 4.4314 -9.0413 -3.8302 26 1 -0.3634 -0.0987 1.0229 27 1 -0.3633 0.9352 -0.4259 28 1 -0.3634 -0.8365 -0.5970 29 1 1.6582 2.1327 0.0011 30 1 4.1203 2.1326 -0.0076 31 1 5.3517 -0.0001 -0.0098 32 1 4.1206 -2.1324 -0.0013 33 1 2.9922 -3.5606 1.0705 34 1 1.7466 -2.8372 2.1163 35 1 1.3808 -4.3080 1.1825 36 1 0.8472 -5.6389 0.1848 37 1 -0.2376 -4.2313 0.0838 38 1 -0.5087 -5.6413 -0.9683 39 1 -0.6388 -5.9449 -2.8630 40 1 0.2042 -5.8790 -4.4291 41 1 -0.4362 -4.3868 -3.6994 42 1 2.2902 -7.5598 -5.4898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:09 Heat of formation + Delta-G solvation = -31.590512 kcal Electronic energy + Delta-G solvation = -21878.787792 eV Core-core repulsion = 18822.944156 eV Total energy + Delta-G solvation = -3055.843636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44870 -39.82140 -37.11743 -35.56847 -34.48500 -33.50186 -31.49016 -29.99441 -27.83321 -27.59620 -27.31225 -25.66066 -23.70444 -22.43787 -21.48187 -19.79362 -18.54158 -17.96475 -17.32602 -17.11161 -16.41998 -16.23077 -15.81520 -15.50791 -14.92057 -14.69100 -14.46837 -14.34559 -14.05418 -13.92565 -13.49308 -13.33624 -13.21159 -13.12047 -12.99621 -12.82177 -12.73649 -12.64325 -12.46423 -12.30797 -12.14597 -12.10783 -11.75760 -11.54378 -11.14618 -10.61659 -10.41705 -9.63373 -9.42757 -9.29485 -8.14808 -6.31470 0.46850 0.55039 1.39560 1.41394 1.52622 1.83910 2.32799 2.49736 2.93856 3.13017 3.61878 3.79811 3.98420 4.08505 4.17147 4.26515 4.30324 4.46443 4.49968 4.65647 4.67752 4.72608 4.80873 4.86716 4.87049 4.89676 4.92556 4.98235 5.03483 5.09497 5.18857 5.29958 5.34127 5.47063 5.61126 5.64112 5.66532 5.68780 5.79022 6.04668 6.16467 6.18922 6.77182 6.86548 7.33318 7.51620 8.89673 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026023 B = 0.004733 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.733064 B = 5914.493496 C = 6147.588282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.142 4.142 6 C -0.109 4.109 7 C -0.077 4.077 8 C -0.064 4.064 9 H 0.128 0.872 10 C -0.147 4.147 11 C 0.499 3.501 12 O -0.599 6.599 13 N -0.599 5.599 14 C 0.079 3.921 15 C 0.261 3.739 16 H 0.004 0.996 17 C -0.132 4.132 18 C -0.534 4.534 19 H 0.061 0.939 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.273 1.273 25 H -0.287 1.287 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.131 0.869 32 H 0.098 0.902 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.018 0.982 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 11.839 14.757 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.127 4.127 7 C -0.078 4.078 8 C -0.085 4.085 9 H 0.145 0.855 10 C -0.204 4.204 11 C 0.287 3.713 12 O -0.480 6.480 13 N -0.329 5.329 14 C -0.063 4.063 15 C 0.159 3.841 16 H 0.022 0.978 17 C -0.191 4.191 18 C -0.573 4.573 19 H 0.079 0.921 20 C -0.186 4.186 21 N -0.558 5.558 22 Si 0.790 3.210 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.213 1.213 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.279 11.988 14.139 19.025 hybrid contribution 0.892 -1.152 -0.686 1.611 sum -3.387 10.836 13.453 17.603 Atomic orbital electron populations 1.20891 0.89575 1.03226 1.03498 1.20099 0.97445 0.92335 0.99394 1.21319 0.94499 0.97863 1.01008 1.21425 0.94739 0.98308 0.99566 1.21315 1.00595 0.92547 1.01500 1.20980 0.94376 0.98114 0.99238 1.19369 0.93584 0.93745 1.01093 1.20377 1.02722 0.92835 0.92572 0.85468 1.22036 1.01407 1.00468 0.96443 1.21250 0.79434 0.81364 0.89212 1.90627 1.40454 1.68123 1.48830 1.48187 1.47112 1.18628 1.19019 1.22002 0.94006 0.99383 0.90892 1.18510 0.93661 0.90650 0.81270 0.97794 1.21875 0.96912 0.98240 1.02043 1.21601 1.40524 1.01719 0.93456 0.92108 1.25748 0.96038 1.02088 0.94699 1.70036 1.48260 1.38123 0.99402 0.85408 0.77837 0.79214 0.78562 1.18801 1.19884 1.21323 0.88815 0.90077 0.92385 0.83452 0.83576 0.85098 0.88425 0.93929 0.89035 0.89498 0.92102 0.88595 0.91131 0.93110 0.91519 0.96256 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.13 71.23 0.65 -1.60 16 2 C -0.09 -2.42 5.88 -19.87 -0.12 -2.54 16 3 C -0.13 -2.98 9.68 22.27 0.22 -2.77 16 4 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 5 C -0.14 -3.96 10.05 22.27 0.22 -3.74 16 6 C -0.11 -3.61 8.25 22.27 0.18 -3.42 16 7 C -0.08 -2.41 4.31 -19.87 -0.09 -2.50 16 8 C -0.06 -1.93 1.82 -12.28 -0.02 -1.96 16 9 H 0.13 3.08 4.99 -2.39 -0.01 3.07 16 10 C -0.15 -3.66 8.57 71.98 0.62 -3.04 16 11 C 0.50 21.28 6.97 87.66 0.61 21.89 16 12 O -0.60 -31.89 14.74 -3.02 -0.04 -31.94 16 13 N -0.60 -25.66 2.75 -826.78 -2.28 -27.94 16 14 C 0.08 2.45 8.04 127.77 1.03 3.48 16 15 C 0.26 13.90 2.64 44.25 0.12 14.01 16 16 H 0.00 0.26 6.90 -2.39 -0.02 0.25 16 17 C -0.13 -6.48 8.95 71.98 0.64 -5.83 16 18 C -0.53 -29.44 8.37 25.60 0.21 -29.22 16 19 H 0.06 3.25 7.65 -2.91 -0.02 3.22 16 20 C 0.01 0.75 5.30 84.65 0.45 1.20 16 21 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 22 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 28 H 0.06 1.26 6.55 -2.39 -0.02 1.24 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.10 3.51 7.24 -2.91 -0.02 3.49 16 33 H 0.04 1.22 7.09 -2.39 -0.02 1.20 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.98 4.53 -2.39 -0.01 1.97 16 36 H 0.06 1.79 6.95 -2.39 -0.02 1.77 16 37 H 0.10 2.14 6.01 -2.38 -0.01 2.12 16 38 H 0.07 2.20 6.43 -2.39 -0.02 2.19 16 39 H 0.05 2.22 6.66 -2.39 -0.02 2.21 16 40 H 0.07 3.64 6.07 -2.38 -0.01 3.62 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -73.34 329.70 5.91 -67.42 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.01 Total: 19.23 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 4.95 Total: -18.71 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.03 Total: -81.56 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.04 Total: -31.94 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -73.34 5.91 -67.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.833 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds