Wall clock time and date at job start Mon Mar 30 2020 02:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38250 * 119.99992 * 2 1 4 4 C 1.38219 * 120.00240 * 180.25729 * 3 2 1 5 5 C 1.38261 * 119.99302 * 359.52498 * 4 3 2 6 6 C 1.38210 * 120.00123 * 0.40512 * 5 4 3 7 7 C 1.38211 * 119.99771 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46983 * 5.82877 * 8 7 2 10 10 C 1.52992 * 109.47297 * 125.82914 * 8 7 2 11 11 C 1.50706 * 109.46988 * 245.83211 * 8 7 2 12 12 O 1.21274 * 119.99755 * 359.97438 * 11 8 7 13 13 N 1.34774 * 119.99617 * 179.97438 * 11 8 7 14 14 C 1.46493 * 120.00368 * 0.02562 * 13 11 8 15 15 C 1.46501 * 119.99778 * 179.97438 * 13 11 8 16 16 H 1.09005 * 109.47362 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46947 * 119.99964 * 15 13 11 18 18 C 1.50698 * 109.47507 * 240.00309 * 15 13 11 19 19 H 1.08003 * 119.99721 * 0.02562 * 18 15 13 20 20 C 1.37873 * 119.99958 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99569 * 180.02562 * 20 18 15 22 22 Si 1.86793 * 120.00252 * 359.97438 * 20 18 15 23 23 H 1.48506 * 109.47231 * 90.00108 * 22 20 18 24 24 H 1.48502 * 109.47517 * 209.99857 * 22 20 18 25 25 H 1.48498 * 109.47488 * 329.99997 * 22 20 18 26 26 H 1.09000 * 109.46966 * 95.72794 * 1 2 3 27 27 H 1.09000 * 109.47447 * 215.72949 * 1 2 3 28 28 H 1.09002 * 109.47004 * 335.72982 * 1 2 3 29 29 H 1.08003 * 120.00110 * 359.97412 * 3 2 1 30 30 H 1.07991 * 120.00352 * 179.72243 * 4 3 2 31 31 H 1.08004 * 119.99684 * 180.23510 * 5 4 3 32 32 H 1.07998 * 119.99797 * 179.82615 * 6 5 4 33 33 H 1.09004 * 109.47043 * 59.99753 * 10 8 7 34 34 H 1.08998 * 109.47487 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.47463 * 299.99977 * 10 8 7 36 36 H 1.09003 * 109.47622 * 89.99821 * 14 13 11 37 37 H 1.09002 * 109.47582 * 209.99839 * 14 13 11 38 38 H 1.09004 * 109.47105 * 330.00030 * 14 13 11 39 39 H 1.09000 * 109.46880 * 60.00805 * 17 15 13 40 40 H 1.09007 * 109.46913 * 180.02562 * 17 15 13 41 41 H 1.09001 * 109.47126 * 299.99960 * 17 15 13 42 42 H 0.97000 * 119.99692 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 3.5806 -1.1970 0.0006 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3775 -2.3056 -0.1024 10 6 1.9203 -3.3667 -1.1674 11 6 1.6977 -3.2271 1.2984 12 8 2.4193 -2.7329 2.1386 13 7 1.1221 -4.4246 1.5243 14 6 0.2509 -5.0218 0.5092 15 6 1.3686 -5.1297 2.7846 16 1 2.0360 -4.5355 3.4089 17 6 0.0424 -5.3441 3.5168 18 6 2.0053 -6.4650 2.4971 19 1 2.2067 -6.7588 1.4775 20 6 2.3317 -7.3110 3.5357 21 7 2.8879 -8.4760 3.2847 22 14 1.9855 -6.8018 5.2992 23 1 0.6251 -7.2540 5.6870 24 1 2.9892 -7.4232 6.2001 25 1 2.0667 -5.3234 5.4127 26 1 -0.3633 -0.1026 -1.0225 27 1 -0.3634 -0.8342 0.6001 28 1 -0.3633 0.9369 0.4224 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1326 -0.0099 31 1 5.3518 -0.0001 -0.0012 32 1 4.1206 -2.1323 0.0014 33 1 2.9874 -3.5632 -1.0633 34 1 1.3756 -4.3109 -1.1663 35 1 1.7372 -2.8424 -2.1053 36 1 0.8466 -5.6394 -0.1631 37 1 -0.5043 -5.6389 0.9959 38 1 -0.2377 -4.2315 -0.0607 39 1 -0.6252 -5.9382 2.8928 40 1 0.2258 -5.8683 4.4548 41 1 -0.4181 -4.3783 3.7249 42 1 3.1172 -9.0714 4.0154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:13 Heat of formation + Delta-G solvation = -4.866959 kcal Electronic energy + Delta-G solvation = -21941.170668 eV Core-core repulsion = 18886.485852 eV Total energy + Delta-G solvation = -3054.684816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19879 -38.60550 -35.52098 -34.26995 -32.74802 -32.40968 -30.49990 -28.99853 -26.79105 -26.40796 -25.19710 -24.44636 -22.39869 -21.32201 -20.12197 -18.29171 -17.05529 -16.53802 -16.03276 -15.73772 -15.19467 -14.80961 -14.45817 -14.19678 -13.77218 -13.52130 -13.08029 -13.06051 -12.93222 -12.59647 -12.36162 -12.26621 -12.11714 -12.04513 -11.84424 -11.63013 -11.44615 -11.24192 -11.10987 -10.76608 -10.66907 -10.46939 -10.12710 -9.64693 -9.33288 -8.97378 -8.63896 -8.59890 -8.40147 -7.70703 -6.14813 -4.15135 1.48730 1.57876 3.22909 3.29578 3.36905 3.39976 3.72442 4.04221 4.35232 4.72592 4.85492 5.03263 5.04119 5.15775 5.22572 5.29727 5.34052 5.38762 5.57070 5.60054 5.69236 5.74471 5.85110 5.86917 5.95031 5.96665 6.16956 6.20537 6.23469 6.26031 6.28092 6.37810 6.49527 6.61024 6.68266 6.82433 6.84606 7.11401 7.18697 7.36115 7.63604 8.19989 8.48190 8.85298 8.94263 9.46687 10.97958 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.004967 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.449322 B = 5636.266807 C = 5800.421092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.123 4.123 5 C -0.127 4.127 6 C -0.082 4.082 7 C -0.055 4.055 8 C -0.077 4.077 9 H 0.102 0.898 10 C -0.152 4.152 11 C 0.511 3.489 12 O -0.544 6.544 13 N -0.587 5.587 14 C 0.084 3.916 15 C 0.229 3.771 16 H 0.062 0.938 17 C -0.161 4.161 18 C -0.525 4.525 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.896 5.896 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.264 1.264 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.032 0.968 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 15.065 -9.562 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.100 4.100 7 C -0.055 4.055 8 C -0.098 4.098 9 H 0.120 0.880 10 C -0.209 4.209 11 C 0.298 3.702 12 O -0.422 6.422 13 N -0.318 5.318 14 C -0.059 4.059 15 C 0.127 3.873 16 H 0.080 0.920 17 C -0.219 4.219 18 C -0.564 4.564 19 H 0.096 0.904 20 C -0.127 4.127 21 N -0.533 5.533 22 Si 0.712 3.288 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.188 1.188 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.952 15.126 -9.024 18.296 hybrid contribution -0.135 -0.040 1.024 1.034 sum -5.087 15.086 -7.999 17.817 Atomic orbital electron populations 1.20834 0.91633 1.02752 1.02090 1.19692 0.95754 0.92626 1.00240 1.20891 0.94255 0.96991 1.02256 1.21043 0.94276 0.97788 1.00954 1.21072 0.99695 0.92488 1.01259 1.20957 0.93633 0.98167 0.97285 1.19210 0.93632 0.92867 0.99793 1.20381 1.01185 0.93175 0.95063 0.88044 1.22043 1.02770 1.00061 0.96067 1.20268 0.80524 0.81442 0.88011 1.90661 1.37830 1.66770 1.46897 1.47819 1.46652 1.18387 1.18940 1.21751 0.94397 0.97957 0.91803 1.19281 0.93197 0.93423 0.81387 0.92038 1.22461 0.99913 0.99245 1.00306 1.21153 1.40323 0.99167 0.95736 0.90361 1.24859 0.94386 0.94618 0.98865 1.69877 1.41926 1.09056 1.32451 0.86928 0.77224 0.79565 0.85041 1.20417 1.22152 1.18845 0.91212 0.91339 0.91674 0.86474 0.86523 0.86356 0.86159 0.91874 0.90281 0.91927 0.92422 0.90940 0.92551 0.92526 0.93182 0.94864 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.14 36.01 0.33 -0.91 16 2 C -0.08 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.56 9.68 -39.58 -0.38 -1.94 16 4 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 5 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 6 C -0.08 -1.29 8.24 -39.58 -0.33 -1.61 16 7 C -0.05 -0.83 4.31 -104.62 -0.45 -1.28 16 8 C -0.08 -1.15 1.83 -92.92 -0.17 -1.32 16 9 H 0.10 1.29 4.98 -51.93 -0.26 1.03 16 10 C -0.15 -1.98 8.57 37.15 0.32 -1.66 16 11 C 0.51 10.21 6.97 -10.98 -0.08 10.13 16 12 O -0.54 -13.06 14.73 5.56 0.08 -12.98 16 13 N -0.59 -11.94 2.75 -175.26 -0.48 -12.42 16 14 C 0.08 1.34 8.04 59.84 0.48 1.82 16 15 C 0.23 5.54 2.23 -69.08 -0.15 5.39 16 16 H 0.06 1.67 5.95 -51.93 -0.31 1.36 16 17 C -0.16 -3.48 8.65 37.16 0.32 -3.16 16 18 C -0.53 -14.49 8.95 -34.44 -0.31 -14.80 16 19 H 0.08 2.31 7.89 -52.48 -0.41 1.90 16 20 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 21 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 22 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 23 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.77 6.54 -51.93 -0.34 0.43 16 28 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 29 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.95 7.24 -52.49 -0.38 1.57 16 33 H 0.06 0.90 7.09 -51.93 -0.37 0.53 16 34 H 0.08 0.99 4.53 -51.93 -0.24 0.75 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.91 6.95 -51.93 -0.36 0.55 16 37 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 38 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 39 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 40 H 0.05 1.13 3.28 -51.92 -0.17 0.96 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -33.02 322.87 -6.79 -39.82 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.96 Total: 2.11 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.93 Total: -13.07 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.29 Total: -38.59 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.02 -6.79 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.949 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds