Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38250 * 119.99992 * 2 1 4 4 C 1.38219 * 120.00240 * 180.25729 * 3 2 1 5 5 C 1.38261 * 119.99302 * 359.52498 * 4 3 2 6 6 C 1.38210 * 120.00123 * 0.40512 * 5 4 3 7 7 C 1.38211 * 119.99771 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.00187 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.46983 * 5.82877 * 8 7 2 10 10 C 1.52992 * 109.47297 * 125.82914 * 8 7 2 11 11 C 1.50706 * 109.46988 * 245.83211 * 8 7 2 12 12 O 1.21274 * 119.99755 * 359.97438 * 11 8 7 13 13 N 1.34774 * 119.99617 * 179.97438 * 11 8 7 14 14 C 1.46493 * 120.00368 * 0.02562 * 13 11 8 15 15 C 1.46501 * 119.99778 * 179.97438 * 13 11 8 16 16 H 1.09005 * 109.47362 * 0.02562 * 15 13 11 17 17 C 1.53003 * 109.46947 * 119.99964 * 15 13 11 18 18 C 1.50698 * 109.47507 * 240.00309 * 15 13 11 19 19 H 1.08003 * 119.99721 * 0.02562 * 18 15 13 20 20 C 1.37873 * 119.99958 * 179.97438 * 18 15 13 21 21 N 1.31518 * 119.99569 * 180.02562 * 20 18 15 22 22 Si 1.86793 * 120.00252 * 359.97438 * 20 18 15 23 23 H 1.48506 * 109.47231 * 90.00108 * 22 20 18 24 24 H 1.48502 * 109.47517 * 209.99857 * 22 20 18 25 25 H 1.48498 * 109.47488 * 329.99997 * 22 20 18 26 26 H 1.09000 * 109.46966 * 95.72794 * 1 2 3 27 27 H 1.09000 * 109.47447 * 215.72949 * 1 2 3 28 28 H 1.09002 * 109.47004 * 335.72982 * 1 2 3 29 29 H 1.08003 * 120.00110 * 359.97412 * 3 2 1 30 30 H 1.07991 * 120.00352 * 179.72243 * 4 3 2 31 31 H 1.08004 * 119.99684 * 180.23510 * 5 4 3 32 32 H 1.07998 * 119.99797 * 179.82615 * 6 5 4 33 33 H 1.09004 * 109.47043 * 59.99753 * 10 8 7 34 34 H 1.08998 * 109.47487 * 179.97438 * 10 8 7 35 35 H 1.09001 * 109.47463 * 299.99977 * 10 8 7 36 36 H 1.09003 * 109.47622 * 89.99821 * 14 13 11 37 37 H 1.09002 * 109.47582 * 209.99839 * 14 13 11 38 38 H 1.09004 * 109.47105 * 330.00030 * 14 13 11 39 39 H 1.09000 * 109.46880 * 60.00805 * 17 15 13 40 40 H 1.09007 * 109.46913 * 180.02562 * 17 15 13 41 41 H 1.09001 * 109.47126 * 299.99960 * 17 15 13 42 42 H 0.97000 * 119.99692 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0008 6 6 3.5806 -1.1970 0.0006 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3775 -2.3056 -0.1024 10 6 1.9203 -3.3667 -1.1674 11 6 1.6977 -3.2271 1.2984 12 8 2.4193 -2.7329 2.1386 13 7 1.1221 -4.4246 1.5243 14 6 0.2509 -5.0218 0.5092 15 6 1.3686 -5.1297 2.7846 16 1 2.0360 -4.5355 3.4089 17 6 0.0424 -5.3441 3.5168 18 6 2.0053 -6.4650 2.4971 19 1 2.2067 -6.7588 1.4775 20 6 2.3317 -7.3110 3.5357 21 7 2.8879 -8.4760 3.2847 22 14 1.9855 -6.8018 5.2992 23 1 0.6251 -7.2540 5.6870 24 1 2.9892 -7.4232 6.2001 25 1 2.0667 -5.3234 5.4127 26 1 -0.3633 -0.1026 -1.0225 27 1 -0.3634 -0.8342 0.6001 28 1 -0.3633 0.9369 0.4224 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1326 -0.0099 31 1 5.3518 -0.0001 -0.0012 32 1 4.1206 -2.1323 0.0014 33 1 2.9874 -3.5632 -1.0633 34 1 1.3756 -4.3109 -1.1663 35 1 1.7372 -2.8424 -2.1053 36 1 0.8466 -5.6394 -0.1631 37 1 -0.5043 -5.6389 0.9959 38 1 -0.2377 -4.2315 -0.0607 39 1 -0.6252 -5.9382 2.8928 40 1 0.2258 -5.8683 4.4548 41 1 -0.4181 -4.3783 3.7249 42 1 3.1172 -9.0714 4.0154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = -25.365175 kcal Electronic energy + Delta-G solvation = -21942.059537 eV Core-core repulsion = 18886.485852 eV Total energy + Delta-G solvation = -3055.573685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51291 -39.88159 -37.24943 -35.59404 -34.51947 -33.52681 -32.19826 -30.15796 -27.89405 -27.60940 -27.18803 -25.71833 -23.80785 -22.45974 -21.47618 -19.81621 -18.93900 -17.97810 -17.45822 -17.27998 -16.40697 -16.35432 -15.86823 -15.50430 -15.08745 -14.77324 -14.59661 -14.43569 -14.12114 -14.02431 -13.92472 -13.53267 -13.34187 -13.31928 -13.15796 -12.96190 -12.85382 -12.69627 -12.48268 -12.24552 -12.06348 -11.76951 -11.61947 -11.54649 -11.32754 -10.81228 -10.54601 -9.64127 -9.44258 -9.37126 -8.36562 -6.40481 0.46001 0.54595 1.23298 1.33438 1.41862 1.76031 2.25789 2.29871 2.91709 2.98896 3.59261 3.76585 3.95216 4.07901 4.15961 4.25386 4.28880 4.42228 4.43904 4.48483 4.57473 4.60107 4.65455 4.72202 4.77008 4.84949 4.87840 4.91459 4.97477 5.00718 5.08336 5.17897 5.29931 5.32039 5.35316 5.48551 5.62166 5.65883 5.73071 5.78250 6.17150 6.21041 6.61371 6.75370 7.21261 7.39649 8.79511 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025369 B = 0.004967 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.449322 B = 5636.266807 C = 5800.421092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.122 4.122 5 C -0.142 4.142 6 C -0.110 4.110 7 C -0.078 4.078 8 C -0.063 4.063 9 H 0.133 0.867 10 C -0.149 4.149 11 C 0.503 3.497 12 O -0.593 6.593 13 N -0.594 5.594 14 C 0.079 3.921 15 C 0.230 3.770 16 H 0.026 0.974 17 C -0.153 4.153 18 C -0.523 4.523 19 H 0.046 0.954 20 C 0.024 3.976 21 N -0.939 5.939 22 Si 0.940 3.060 23 H -0.251 1.251 24 H -0.296 1.296 25 H -0.266 1.266 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.889 17.424 -10.215 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.128 4.128 7 C -0.078 4.078 8 C -0.084 4.084 9 H 0.150 0.850 10 C -0.206 4.206 11 C 0.292 3.708 12 O -0.475 6.475 13 N -0.324 5.324 14 C -0.063 4.063 15 C 0.127 3.873 16 H 0.044 0.956 17 C -0.211 4.211 18 C -0.562 4.562 19 H 0.064 0.936 20 C -0.175 4.175 21 N -0.578 5.578 22 Si 0.767 3.233 23 H -0.177 1.177 24 H -0.224 1.224 25 H -0.191 1.191 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.477 17.481 -9.712 21.350 hybrid contribution 0.723 -0.719 1.134 1.524 sum -6.754 16.762 -8.579 20.005 Atomic orbital electron populations 1.20905 0.89419 1.03379 1.03541 1.20089 0.97498 0.92197 0.99235 1.21326 0.94446 0.97933 1.00966 1.21425 0.94790 0.98246 0.99501 1.21306 1.00561 0.92572 1.01533 1.20980 0.94462 0.98066 0.99278 1.19345 0.93487 0.93730 1.01272 1.20369 1.02997 0.92750 0.92274 0.84976 1.22047 1.01346 1.00461 0.96703 1.21241 0.79215 0.81155 0.89229 1.90625 1.39854 1.68011 1.48967 1.47893 1.47336 1.18556 1.18642 1.22029 0.93792 0.99451 0.91034 1.18942 0.93978 0.91072 0.83317 0.95619 1.22309 0.98440 1.00721 0.99643 1.21358 1.39988 1.00583 0.94248 0.93594 1.25617 0.94370 0.94564 1.02957 1.70001 1.43671 1.10391 1.33785 0.86003 0.78245 0.78864 0.80194 1.17656 1.22364 1.19147 0.88905 0.92052 0.90035 0.83415 0.83635 0.85231 0.88590 0.94179 0.89663 0.88942 0.92893 0.90643 0.87983 0.90745 0.94116 0.92607 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 9.14 71.24 0.65 -1.37 16 2 C -0.09 -2.20 5.88 -19.87 -0.12 -2.32 16 3 C -0.13 -2.80 9.68 22.27 0.22 -2.59 16 4 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 5 C -0.14 -3.85 10.05 22.27 0.22 -3.62 16 6 C -0.11 -3.53 8.24 22.27 0.18 -3.35 16 7 C -0.08 -2.31 4.31 -19.87 -0.09 -2.40 16 8 C -0.06 -1.80 1.83 -12.29 -0.02 -1.82 16 9 H 0.13 2.90 4.98 -2.39 -0.01 2.89 16 10 C -0.15 -3.70 8.57 71.98 0.62 -3.09 16 11 C 0.50 20.19 6.97 87.66 0.61 20.80 16 12 O -0.59 -29.52 14.73 -3.01 -0.04 -29.57 16 13 N -0.59 -24.03 2.75 -826.80 -2.28 -26.31 16 14 C 0.08 2.36 8.04 127.77 1.03 3.39 16 15 C 0.23 11.25 2.23 44.25 0.10 11.35 16 16 H 0.03 1.45 5.95 -2.38 -0.01 1.43 16 17 C -0.15 -6.36 8.65 71.98 0.62 -5.73 16 18 C -0.52 -29.67 8.95 25.60 0.23 -29.44 16 19 H 0.05 2.83 7.89 -2.91 -0.02 2.81 16 20 C 0.02 1.37 5.45 84.65 0.46 1.84 16 21 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 22 Si 0.94 45.81 24.37 68.60 1.67 47.48 16 23 H -0.25 -11.15 6.87 99.48 0.68 -10.46 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 25 H -0.27 -13.02 6.53 99.48 0.65 -12.37 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.16 6.54 -2.39 -0.02 1.15 16 28 H 0.08 1.16 8.05 -2.39 -0.02 1.14 16 29 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.15 2.35 8.06 -2.92 -0.02 2.33 16 31 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.10 3.41 7.24 -2.91 -0.02 3.39 16 33 H 0.04 1.17 7.09 -2.38 -0.02 1.16 16 34 H 0.08 1.99 4.53 -2.39 -0.01 1.98 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.64 6.95 -2.39 -0.02 1.62 16 37 H 0.07 2.22 6.43 -2.39 -0.02 2.20 16 38 H 0.10 2.10 6.01 -2.39 -0.01 2.09 16 39 H 0.07 2.79 6.66 -2.39 -0.02 2.77 16 40 H 0.04 1.75 3.28 -2.38 -0.01 1.75 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.40 322.87 5.53 -69.87 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.94 Total: 17.13 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 4.94 Total: -20.88 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -1.98 Total: -84.03 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.04 Total: -29.57 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -75.40 5.53 -69.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.508 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds