Wall clock time and date at job start Mon Mar 30 2020 02:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38254 * 119.99995 * 2 1 4 4 C 1.38222 * 120.00177 * 180.22792 * 3 2 1 5 5 C 1.38253 * 119.99618 * 359.81530 * 4 3 2 6 6 C 1.38216 * 120.00353 * 359.97438 * 5 4 3 7 7 C 1.38216 * 120.00182 * 179.78542 * 2 1 3 8 8 C 1.50700 * 119.99863 * 0.02562 * 7 2 1 9 9 H 1.09005 * 109.47243 * 353.82923 * 8 7 2 10 10 C 1.52998 * 109.47273 * 233.82881 * 8 7 2 11 11 C 1.50702 * 109.46959 * 113.82638 * 8 7 2 12 12 O 1.21279 * 120.00062 * 10.09607 * 11 8 7 13 13 N 1.34779 * 120.00137 * 190.09200 * 11 8 7 14 14 C 1.46493 * 120.00457 * 183.90659 * 13 11 8 15 15 C 1.46508 * 119.99701 * 3.90854 * 13 11 8 16 16 H 1.08996 * 109.47001 * 354.44164 * 15 13 11 17 17 C 1.52995 * 109.46912 * 114.43823 * 15 13 11 18 18 C 1.50697 * 109.46792 * 234.44055 * 15 13 11 19 19 H 1.08000 * 120.00277 * 359.97438 * 18 15 13 20 20 C 1.37875 * 119.99675 * 180.02562 * 18 15 13 21 21 N 1.31518 * 120.00254 * 359.97438 * 20 18 15 22 22 Si 1.86807 * 120.00173 * 180.02562 * 20 18 15 23 23 H 1.48489 * 109.47420 * 89.99620 * 22 20 18 24 24 H 1.48496 * 109.46978 * 210.00009 * 22 20 18 25 25 H 1.48500 * 109.46826 * 329.99523 * 22 20 18 26 26 H 1.09007 * 109.47261 * 264.41283 * 1 2 3 27 27 H 1.09005 * 109.47353 * 24.41679 * 1 2 3 28 28 H 1.09006 * 109.47358 * 144.41816 * 1 2 3 29 29 H 1.08002 * 120.00274 * 0.06472 * 3 2 1 30 30 H 1.07993 * 120.00317 * 179.82898 * 4 3 2 31 31 H 1.07995 * 120.00273 * 179.97438 * 5 4 3 32 32 H 1.07992 * 120.00259 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47233 * 63.36905 * 10 8 7 34 34 H 1.09002 * 109.47323 * 183.37022 * 10 8 7 35 35 H 1.09000 * 109.46732 * 303.37099 * 10 8 7 36 36 H 1.09007 * 109.47196 * 84.89767 * 14 13 11 37 37 H 1.09005 * 109.47145 * 324.90370 * 14 13 11 38 38 H 1.08997 * 109.47700 * 204.90247 * 14 13 11 39 39 H 1.08994 * 109.47543 * 300.00197 * 17 15 13 40 40 H 1.09005 * 109.47057 * 60.00163 * 17 15 13 41 41 H 1.09003 * 109.46934 * 179.97438 * 17 15 13 42 42 H 0.97003 * 120.00039 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0013 7 6 2.1980 -1.1970 0.0045 8 6 1.4445 -2.5021 0.0088 9 1 0.3780 -2.3055 0.1182 10 6 1.9264 -3.3653 1.1765 11 6 1.6910 -3.2286 -1.2883 12 8 2.5441 -2.8314 -2.0533 13 7 0.9633 -4.3200 -1.5982 14 6 1.2599 -5.0761 -2.8174 15 6 -0.1243 -4.7500 -0.7158 16 1 -0.1309 -4.1307 0.1810 17 6 -1.4609 -4.6046 -1.4458 18 6 0.0829 -6.1917 -0.3293 19 1 0.9388 -6.7337 -0.7037 20 6 -0.8208 -6.8193 0.5016 21 7 -1.8634 -6.1595 0.9573 22 14 -0.5638 -8.6063 0.9815 23 1 0.2473 -8.6736 2.2235 24 1 -1.8812 -9.2504 1.2151 25 1 0.1467 -9.3153 -0.1128 26 1 -0.3634 -0.1001 1.0228 27 1 -0.3634 0.9358 -0.4248 28 1 -0.3634 -0.8358 -0.5980 29 1 1.6582 2.1327 0.0011 30 1 4.1204 2.1326 -0.0076 31 1 5.3516 0.0000 -0.0098 32 1 4.1205 -2.1322 -0.0016 33 1 1.6939 -2.8664 2.1173 34 1 1.4248 -4.3325 1.1445 35 1 3.0037 -3.5120 1.0995 36 1 2.0573 -5.7916 -2.6163 37 1 1.5771 -4.3898 -3.6026 38 1 0.3660 -5.6097 -3.1405 39 1 -1.6107 -3.5618 -1.7255 40 1 -1.4543 -5.2240 -2.3428 41 1 -2.2701 -4.9250 -0.7895 42 1 -2.4990 -6.6010 1.5422 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:15 Heat of formation + Delta-G solvation = -32.365412 kcal Electronic energy + Delta-G solvation = -22134.893373 eV Core-core repulsion = 19079.016134 eV Total energy + Delta-G solvation = -3055.877238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47691 -39.81454 -37.31646 -35.18499 -34.52530 -33.50048 -31.00519 -30.54809 -28.01845 -27.63103 -27.24734 -25.40867 -23.40696 -22.58458 -21.74988 -19.67524 -18.55683 -17.94439 -17.38227 -16.74811 -16.59156 -16.11197 -15.89627 -15.42649 -14.97114 -14.67798 -14.46690 -14.33052 -14.10882 -13.89553 -13.44669 -13.28980 -13.27623 -13.12113 -12.95148 -12.81616 -12.75223 -12.58766 -12.53125 -12.39355 -12.14641 -11.95713 -11.74018 -11.54075 -11.18549 -10.60796 -10.45436 -9.61358 -9.41987 -9.36053 -8.12504 -6.25772 0.48289 0.57451 1.43670 1.47377 1.54566 1.74990 2.33729 2.49213 2.95033 3.16688 3.69424 3.77394 3.98562 4.10191 4.19490 4.31870 4.33163 4.48414 4.54104 4.64757 4.66520 4.72355 4.79136 4.82231 4.88197 4.93030 4.96297 4.98160 5.02324 5.07198 5.20128 5.31026 5.33928 5.41580 5.58417 5.64304 5.67680 5.78402 5.82565 5.96300 6.19858 6.22935 6.68974 6.85868 7.32401 7.47568 8.90989 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024799 B = 0.005149 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.817417 B = 5436.586772 C = 5548.780888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.137 4.137 6 C -0.101 4.101 7 C -0.080 4.080 8 C -0.066 4.066 9 H 0.104 0.896 10 C -0.137 4.137 11 C 0.510 3.490 12 O -0.589 6.589 13 N -0.597 5.597 14 C 0.099 3.901 15 C 0.255 3.745 16 H 0.053 0.947 17 C -0.143 4.143 18 C -0.536 4.536 19 H 0.052 0.948 20 C 0.032 3.968 21 N -0.906 5.906 22 Si 0.949 3.051 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 11.132 0.459 12.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.155 4.155 6 C -0.119 4.119 7 C -0.080 4.080 8 C -0.087 4.087 9 H 0.121 0.879 10 C -0.194 4.194 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.327 5.327 14 C -0.043 4.043 15 C 0.154 3.846 16 H 0.071 0.929 17 C -0.202 4.202 18 C -0.575 4.575 19 H 0.070 0.930 20 C -0.169 4.169 21 N -0.544 5.544 22 Si 0.776 3.224 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.122 0.878 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.041 11.266 0.167 12.344 hybrid contribution -0.046 -1.506 0.144 1.514 sum 4.994 9.760 0.311 10.968 Atomic orbital electron populations 1.20875 0.90452 1.03081 1.02968 1.20041 0.96905 0.92694 0.99813 1.21286 0.94727 0.97461 1.01091 1.21443 0.94393 0.98572 0.99361 1.21341 1.00745 0.92215 1.01229 1.20966 0.93705 0.98460 0.98790 1.19369 0.93985 0.93119 1.01534 1.20237 1.01827 0.93285 0.93314 0.87859 1.21804 1.01219 0.99949 0.96436 1.20835 0.80751 0.80465 0.88088 1.90573 1.35868 1.68113 1.52587 1.48283 1.33802 1.26219 1.24411 1.21368 1.00992 0.95457 0.86529 1.19018 0.82320 0.94983 0.88324 0.92923 1.22012 1.00763 0.97504 0.99908 1.21440 1.09234 0.96936 1.29876 0.93007 1.25434 0.94667 1.01222 0.95599 1.69936 1.13064 1.37821 1.33622 0.85689 0.77374 0.80875 0.78485 1.20414 1.20843 1.19914 0.90026 0.89518 0.92990 0.83530 0.83246 0.84434 0.87752 0.90418 0.91439 0.92575 0.93851 0.92201 0.90590 0.95610 0.94788 0.90446 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.13 71.23 0.65 -2.33 16 2 C -0.09 -2.76 5.88 -19.87 -0.12 -2.88 16 3 C -0.13 -3.10 9.68 22.27 0.22 -2.88 16 4 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 5 C -0.14 -3.67 10.05 22.27 0.22 -3.44 16 6 C -0.10 -3.32 8.00 22.27 0.18 -3.14 16 7 C -0.08 -2.70 4.42 -19.87 -0.09 -2.79 16 8 C -0.07 -2.43 1.76 -12.29 -0.02 -2.45 16 9 H 0.10 3.78 4.75 -2.38 -0.01 3.77 16 10 C -0.14 -4.89 8.58 71.98 0.62 -4.27 16 11 C 0.51 21.72 6.88 87.66 0.60 22.32 16 12 O -0.59 -27.38 14.88 -3.03 -0.05 -27.43 16 13 N -0.60 -25.73 2.75 -826.80 -2.28 -28.01 16 14 C 0.10 3.92 9.36 127.77 1.20 5.11 16 15 C 0.25 11.64 1.69 44.24 0.07 11.72 16 16 H 0.05 2.49 4.50 -2.39 -0.01 2.48 16 17 C -0.14 -6.34 9.04 71.98 0.65 -5.69 16 18 C -0.54 -26.68 7.92 25.60 0.20 -26.48 16 19 H 0.05 2.64 7.45 -2.91 -0.02 2.62 16 20 C 0.03 1.58 5.30 84.65 0.45 2.03 16 21 N -0.91 -46.51 11.32 21.45 0.24 -46.26 16 22 Si 0.95 40.53 29.54 68.60 2.03 42.56 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.09 1.76 8.05 -2.38 -0.02 1.74 16 28 H 0.05 1.50 6.56 -2.38 -0.02 1.49 16 29 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.10 3.60 7.20 -2.91 -0.02 3.58 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.78 5.78 -2.39 -0.01 2.76 16 35 H 0.06 1.93 6.96 -2.39 -0.02 1.91 16 36 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.06 2.27 7.53 -2.38 -0.02 2.25 16 38 H 0.08 2.86 6.76 -2.39 -0.02 2.85 16 39 H 0.02 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.03 1.45 6.92 -2.38 -0.02 1.43 16 41 H 0.08 3.73 6.07 -2.39 -0.01 3.72 16 42 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -58.30 331.11 6.01 -52.29 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 1.01 Total: 24.57 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 5.06 Total: -17.72 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.03 Total: -74.27 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -58.30 6.01 -52.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.920 kcal (2) G-P(sol) polarization free energy of solvation -58.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds