Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 15 15 C 1.53010 * 109.47009 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47012 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46936 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00209 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99930 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00047 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00056 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46803 * 90.00319 * 21 19 17 23 23 H 1.48495 * 109.46941 * 210.00212 * 21 19 17 24 24 H 1.48503 * 109.46979 * 330.00359 * 21 19 17 25 25 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 26 26 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 27 27 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 28 28 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 30 30 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 31 31 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 32 32 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 33 33 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 34 34 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 35 35 H 0.97002 * 119.99632 * 359.97438 * 13 11 8 36 36 H 1.08995 * 109.47520 * 299.99754 * 14 13 11 37 37 H 1.08998 * 109.47707 * 60.00223 * 14 13 11 38 38 H 1.08997 * 109.47149 * 299.99848 * 15 14 13 39 39 H 1.08999 * 109.47091 * 60.00433 * 15 14 13 40 40 H 1.08997 * 109.46965 * 299.99870 * 16 15 14 41 41 H 1.08996 * 109.47315 * 59.99932 * 16 15 14 42 42 H 0.96999 * 119.99688 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 1.3999 -5.1642 2.7382 15 6 0.6349 -6.4893 2.7314 16 6 0.9058 -7.2412 4.0361 17 6 0.1528 -8.5466 4.0291 18 1 -0.4581 -8.8131 3.1793 19 6 0.2431 -9.4003 5.1081 20 7 -0.4144 -10.5393 5.1022 21 14 1.2993 -8.9391 6.5783 22 1 0.4790 -8.1849 7.5598 23 1 1.8250 -10.1725 7.2164 24 1 2.4333 -8.0930 6.1271 25 1 -0.3634 -0.1108 1.0217 26 1 -0.3633 -0.8293 -0.6069 27 1 -0.3633 0.9402 -0.4149 28 1 1.6583 2.1328 -0.0004 29 1 4.1204 2.1327 0.0098 30 1 5.3517 0.0001 -0.0010 31 1 4.1206 -2.1322 -0.0103 32 1 2.9753 -3.5496 -1.1078 33 1 1.3624 -4.2960 -1.2019 34 1 1.7135 -2.8158 -2.1265 35 1 0.5556 -4.8310 0.8188 36 1 2.4680 -5.3614 2.8285 37 1 1.0696 -4.5588 3.5823 38 1 -0.4332 -6.2917 2.6414 39 1 0.9649 -7.0950 1.8874 40 1 1.9739 -7.4388 4.1266 41 1 0.5756 -6.6354 4.8799 42 1 -0.3506 -11.1400 5.8612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931971708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = -38.763739 kcal Electronic energy + Delta-G solvation = -20508.281127 eV Core-core repulsion = 17452.126437 eV Total energy + Delta-G solvation = -3056.154690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47070 -38.85585 -35.54524 -34.46122 -33.27545 -32.79676 -31.43088 -29.65226 -27.25336 -26.98742 -24.94447 -23.12299 -21.99915 -21.15861 -20.59442 -19.47876 -17.17193 -16.91083 -16.58979 -15.73432 -15.67651 -15.19652 -14.76551 -14.22499 -14.13496 -13.98077 -13.70779 -13.41933 -13.22411 -12.77750 -12.70740 -12.56671 -12.32277 -12.07163 -11.99229 -11.93676 -11.69601 -11.09742 -11.03665 -10.90219 -10.86373 -10.17294 -9.96010 -9.77679 -9.51016 -9.23993 -8.88039 -8.84215 -8.69159 -8.56617 -6.07503 -4.06252 1.21468 1.31469 2.73635 3.29262 3.30668 3.38194 3.42511 3.73579 4.36467 4.43473 4.57079 4.76160 4.77373 4.90253 4.99583 5.03671 5.10941 5.26656 5.34385 5.37372 5.45266 5.50044 5.56910 5.62100 5.64788 5.67831 5.84801 5.95158 5.99977 6.00909 6.35462 6.36022 6.41503 6.43563 6.52461 6.69597 6.78664 6.90266 7.21599 7.35045 7.63888 7.75753 8.34628 8.49184 8.96249 9.54848 11.05735 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.002991 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.251351 B = 9359.964235 C = 9607.363686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.084 4.084 7 C -0.063 4.063 8 C -0.079 4.079 9 H 0.108 0.892 10 C -0.142 4.142 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.726 5.726 14 C 0.114 3.886 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 22.044 -14.755 26.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.063 4.063 8 C -0.100 4.100 9 H 0.126 0.874 10 C -0.199 4.199 11 C 0.298 3.702 12 O -0.412 6.412 13 N -0.377 5.377 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.884 22.213 -14.020 26.718 hybrid contribution 0.238 -0.128 0.646 0.700 sum 5.122 22.086 -13.374 26.322 Atomic orbital electron populations 1.20875 0.91430 1.02666 1.02604 1.19720 0.95872 0.92600 0.99767 1.20943 0.94276 0.97137 1.01882 1.21096 0.94308 0.97931 1.00314 1.21081 0.99781 0.92478 1.01221 1.20900 0.93496 0.98092 0.97677 1.19133 0.93587 0.92709 1.00866 1.20409 1.01999 0.93331 0.94297 0.87426 1.21809 1.02347 0.99273 0.96475 1.20427 0.80269 0.81304 0.88207 1.90716 1.36902 1.67193 1.46342 1.46160 1.49973 1.19956 1.21595 1.21641 1.00649 0.93542 0.85010 1.21703 0.99210 0.93009 1.01160 1.19502 0.97215 0.95864 0.92333 1.21097 1.28873 1.01373 1.04666 0.91006 1.25029 0.95284 0.94763 0.98393 1.69913 1.42517 1.10377 1.31393 0.86777 0.81494 0.78038 0.83005 1.20238 1.21355 1.18905 0.90992 0.91195 0.91493 0.86240 0.86315 0.86245 0.86338 0.91786 0.91455 0.91283 0.76709 0.91854 0.91884 0.92138 0.92098 0.96333 0.96769 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.27 36.01 0.33 -0.64 16 2 C -0.08 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.23 9.68 -39.58 -0.38 -1.61 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 6 C -0.08 -1.00 8.20 -39.58 -0.32 -1.32 16 7 C -0.06 -0.73 4.32 -104.63 -0.45 -1.18 16 8 C -0.08 -0.82 2.71 -92.93 -0.25 -1.08 16 9 H 0.11 0.92 5.55 -51.93 -0.29 0.64 16 10 C -0.14 -1.17 8.84 37.16 0.33 -0.84 16 11 C 0.51 7.24 7.05 -10.99 -0.08 7.16 16 12 O -0.54 -9.78 15.38 5.56 0.09 -9.69 16 13 N -0.73 -9.74 5.45 -60.30 -0.33 -10.06 16 14 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 15 C -0.11 -2.08 5.27 -26.72 -0.14 -2.23 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 21 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.49 6.35 -51.93 -0.33 0.16 16 27 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.40 7.28 -52.49 -0.38 1.01 16 32 H 0.06 0.57 7.12 -51.93 -0.37 0.20 16 33 H 0.07 0.48 7.56 -51.92 -0.39 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 4.23 7.89 -40.82 -0.32 3.91 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -33.50 343.06 -8.57 -42.07 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.66 Total: 0.57 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.94 Total: -18.20 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.45 Total: -37.02 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.50 -8.57 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931971708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.310 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds