Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38263 * 119.99715 * 2 1 4 4 C 1.38216 * 119.99563 * 179.73814 * 3 2 1 5 5 C 1.38261 * 119.99974 * 0.55614 * 4 3 2 6 6 C 1.38213 * 119.99742 * 359.69335 * 5 4 3 7 7 C 1.38209 * 120.00017 * 180.26633 * 2 1 3 8 8 C 1.50699 * 119.99831 * 0.02562 * 7 2 1 9 9 H 1.08997 * 109.47167 * 5.02997 * 8 7 2 10 10 C 1.53000 * 109.46907 * 125.03060 * 8 7 2 11 11 C 1.50698 * 109.47056 * 245.03141 * 8 7 2 12 12 O 1.21281 * 120.00260 * 0.02562 * 11 8 7 13 13 N 1.34780 * 120.00156 * 180.02562 * 11 8 7 14 14 C 1.46492 * 120.00081 * 180.02562 * 13 11 8 15 15 C 1.53010 * 109.47009 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47012 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46936 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00209 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99930 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00047 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00056 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.46803 * 90.00319 * 21 19 17 23 23 H 1.48495 * 109.46941 * 210.00212 * 21 19 17 24 24 H 1.48503 * 109.46979 * 330.00359 * 21 19 17 25 25 H 1.08999 * 109.47276 * 263.81239 * 1 2 3 26 26 H 1.08996 * 109.46939 * 143.80454 * 1 2 3 27 27 H 1.09002 * 109.46876 * 23.80831 * 1 2 3 28 28 H 1.08004 * 120.00228 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.99831 * 180.26640 * 4 3 2 30 30 H 1.07994 * 119.99911 * 179.72148 * 5 4 3 31 31 H 1.08000 * 119.99850 * 180.02562 * 6 5 4 32 32 H 1.09006 * 109.47282 * 60.00210 * 10 8 7 33 33 H 1.09007 * 109.46809 * 179.97438 * 10 8 7 34 34 H 1.08995 * 109.47551 * 300.00140 * 10 8 7 35 35 H 0.97002 * 119.99632 * 359.97438 * 13 11 8 36 36 H 1.08995 * 109.47520 * 299.99754 * 14 13 11 37 37 H 1.08998 * 109.47707 * 60.00223 * 14 13 11 38 38 H 1.08997 * 109.47149 * 299.99848 * 15 14 13 39 39 H 1.08999 * 109.47091 * 60.00433 * 15 14 13 40 40 H 1.08997 * 109.46965 * 299.99870 * 16 15 14 41 41 H 1.08996 * 109.47315 * 59.99932 * 16 15 14 42 42 H 0.96999 * 119.99688 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0055 5 6 4.2717 0.0000 -0.0007 6 6 3.5806 -1.1969 -0.0059 7 6 2.1981 -1.1969 -0.0056 8 6 1.4445 -2.5020 -0.0122 9 1 0.3764 -2.3043 -0.1018 10 6 1.9071 -3.3519 -1.1974 11 6 1.7123 -3.2431 1.2723 12 8 2.4426 -2.7591 2.1109 13 7 1.1401 -4.4440 1.4893 14 6 1.3999 -5.1642 2.7382 15 6 0.6349 -6.4893 2.7314 16 6 0.9058 -7.2412 4.0361 17 6 0.1528 -8.5466 4.0291 18 1 -0.4581 -8.8131 3.1793 19 6 0.2431 -9.4003 5.1081 20 7 -0.4144 -10.5393 5.1022 21 14 1.2993 -8.9391 6.5783 22 1 0.4790 -8.1849 7.5598 23 1 1.8250 -10.1725 7.2164 24 1 2.4333 -8.0930 6.1271 25 1 -0.3634 -0.1108 1.0217 26 1 -0.3633 -0.8293 -0.6069 27 1 -0.3633 0.9402 -0.4149 28 1 1.6583 2.1328 -0.0004 29 1 4.1204 2.1327 0.0098 30 1 5.3517 0.0001 -0.0010 31 1 4.1206 -2.1322 -0.0103 32 1 2.9753 -3.5496 -1.1078 33 1 1.3624 -4.2960 -1.2019 34 1 1.7135 -2.8158 -2.1265 35 1 0.5556 -4.8310 0.8188 36 1 2.4680 -5.3614 2.8285 37 1 1.0696 -4.5588 3.5823 38 1 -0.4332 -6.2917 2.6414 39 1 0.9649 -7.0950 1.8874 40 1 1.9739 -7.4388 4.1266 41 1 0.5756 -6.6354 4.8799 42 1 -0.3506 -11.1400 5.8612 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931971708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = -59.031245 kcal Electronic energy + Delta-G solvation = -20509.159993 eV Core-core repulsion = 17452.126437 eV Total energy + Delta-G solvation = -3057.033555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41963 -39.81431 -36.99801 -35.38277 -35.04504 -33.56171 -33.16662 -30.50859 -28.87823 -27.68734 -25.89958 -24.60515 -22.96249 -22.23768 -21.99402 -20.59765 -18.98556 -18.01778 -17.65298 -16.90257 -16.68647 -16.30872 -16.22589 -15.56095 -15.32910 -14.94228 -14.79703 -14.52902 -14.30387 -13.95079 -13.86969 -13.71364 -13.39750 -13.23570 -12.98610 -12.75338 -12.74572 -12.68762 -12.48234 -11.93244 -11.80233 -11.79525 -11.60257 -11.56244 -11.33628 -10.77034 -10.74879 -10.07897 -9.66028 -9.46399 -8.30172 -6.33871 0.43289 0.52961 1.35848 1.37582 1.49226 1.64130 2.23003 2.35441 2.91501 3.05629 3.57028 3.77674 3.99377 4.06277 4.11329 4.17656 4.20740 4.22637 4.29887 4.47453 4.49712 4.64749 4.75494 4.82340 4.84750 4.87860 4.89938 4.94375 5.01351 5.03420 5.17456 5.24647 5.32914 5.39828 5.50339 5.55005 5.60868 5.64216 5.64850 5.74706 6.15782 6.26823 6.58815 6.74339 7.26725 7.31082 8.86219 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.002991 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.251351 B = 9359.964235 C = 9607.363686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.142 4.142 6 C -0.105 4.105 7 C -0.082 4.082 8 C -0.070 4.070 9 H 0.130 0.870 10 C -0.139 4.139 11 C 0.512 3.488 12 O -0.580 6.580 13 N -0.716 5.716 14 C 0.127 3.873 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.530 4.530 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.249 1.249 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 24.029 -15.348 28.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.123 4.123 7 C -0.082 4.082 8 C -0.091 4.091 9 H 0.148 0.852 10 C -0.196 4.196 11 C 0.299 3.701 12 O -0.459 6.459 13 N -0.368 5.368 14 C 0.003 3.997 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.173 1.173 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.970 24.202 -14.654 28.726 hybrid contribution 0.175 -0.735 0.765 1.075 sum 5.145 23.467 -13.889 27.750 Atomic orbital electron populations 1.20925 0.89748 1.04249 1.02605 1.20082 0.97294 0.92490 0.99304 1.21316 0.94568 0.97965 1.01142 1.21434 0.94705 0.98532 0.99470 1.21342 1.00687 0.92597 1.01347 1.21014 0.94129 0.98279 0.98900 1.19348 0.93647 0.93633 1.01568 1.20422 1.03229 0.92710 0.92695 0.85199 1.21829 1.01815 0.99778 0.96196 1.21096 0.79091 0.80994 0.88912 1.90695 1.38867 1.68247 1.48134 1.45984 1.50097 1.19777 1.20925 1.21270 0.99604 0.92559 0.86240 1.21477 0.99881 0.93538 0.98822 1.19468 0.96358 0.94144 0.95081 1.21463 1.28486 1.03347 1.03494 0.94268 1.25967 0.96778 0.94647 1.01765 1.70055 1.44540 1.11804 1.32662 0.85717 0.80087 0.78076 0.79145 1.19258 1.20984 1.17298 0.91588 0.89928 0.89751 0.83999 0.84019 0.85000 0.87295 0.92875 0.90041 0.89597 0.74839 0.92767 0.92734 0.91579 0.91585 0.96253 0.96355 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.27 71.24 0.66 -0.98 16 2 C -0.09 -1.79 5.88 -19.86 -0.12 -1.91 16 3 C -0.13 -2.36 9.68 22.27 0.22 -2.14 16 4 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 5 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 6 C -0.11 -2.50 8.20 22.27 0.18 -2.32 16 7 C -0.08 -1.81 4.32 -19.87 -0.09 -1.90 16 8 C -0.07 -1.34 2.71 -12.29 -0.03 -1.37 16 9 H 0.13 1.88 5.55 -2.39 -0.01 1.86 16 10 C -0.14 -2.03 8.84 71.98 0.64 -1.39 16 11 C 0.51 13.92 7.05 87.66 0.62 14.54 16 12 O -0.58 -21.15 15.38 -3.03 -0.05 -21.20 16 13 N -0.72 -18.07 5.45 -463.07 -2.52 -20.59 16 14 C 0.13 4.05 5.67 86.38 0.49 4.54 16 15 C -0.10 -3.55 5.27 30.60 0.16 -3.39 16 16 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 17 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 19 C 0.01 0.31 5.47 84.65 0.46 0.77 16 20 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 21 Si 0.95 44.54 27.47 68.60 1.88 46.42 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 0.90 6.35 -2.39 -0.02 0.88 16 27 H 0.08 0.85 8.04 -2.39 -0.02 0.84 16 28 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.11 2.67 7.28 -2.91 -0.02 2.64 16 32 H 0.05 0.90 7.12 -2.38 -0.02 0.88 16 33 H 0.08 0.95 7.56 -2.38 -0.02 0.93 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.41 7.84 7.89 -92.71 -0.73 7.11 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.12 343.06 3.83 -69.29 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.21 Total: 15.60 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.01 Total: -30.52 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.22 Total: -79.59 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -73.12 3.83 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931971708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.257 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds