Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38253 * 120.00219 * 2 1 4 4 C 1.38211 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.00048 * 179.72701 * 2 1 3 8 8 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47404 * 354.44621 * 8 7 2 10 10 C 1.53001 * 109.47081 * 234.44719 * 8 7 2 11 11 C 1.50702 * 109.47122 * 114.44905 * 8 7 2 12 12 O 1.21284 * 119.99937 * 359.97438 * 11 8 7 13 13 N 1.34768 * 120.00069 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00300 * 180.02562 * 13 11 8 15 15 C 1.53003 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46722 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46553 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00594 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99685 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46992 * 90.00668 * 21 19 17 23 23 H 1.48510 * 109.46873 * 210.00167 * 21 19 17 24 24 H 1.48498 * 109.47306 * 330.00045 * 21 19 17 25 25 H 1.08996 * 109.47701 * 96.01173 * 1 2 3 26 26 H 1.09002 * 109.47041 * 336.00916 * 1 2 3 27 27 H 1.09000 * 109.47175 * 216.01483 * 1 2 3 28 28 H 1.08003 * 119.99725 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.99725 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99684 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.99962 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46921 * 300.00197 * 10 8 7 33 33 H 1.09000 * 109.46893 * 59.99996 * 10 8 7 34 34 H 1.08993 * 109.47064 * 180.02562 * 10 8 7 35 35 H 0.97003 * 120.00078 * 359.97438 * 13 11 8 36 36 H 1.09003 * 109.46645 * 299.99652 * 14 13 11 37 37 H 1.09000 * 109.46769 * 59.99653 * 14 13 11 38 38 H 1.09000 * 109.47023 * 300.00057 * 15 14 13 39 39 H 1.09002 * 109.46895 * 59.99579 * 15 14 13 40 40 H 1.09003 * 109.46900 * 299.99774 * 16 15 14 41 41 H 1.09000 * 109.47059 * 60.00110 * 16 15 14 42 42 H 0.96996 * 120.00479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1970 0.0057 8 6 1.4445 -2.5021 0.0125 9 1 0.3771 -2.3049 0.1114 10 6 1.9163 -3.3573 1.1902 11 6 1.7021 -3.2376 -1.2774 12 8 2.4259 -2.7499 -2.1195 13 7 1.1273 -4.4369 -1.4956 14 6 1.3781 -5.1522 -2.7493 15 6 0.6129 -6.4772 -2.7424 16 6 0.8755 -7.2244 -4.0515 17 6 0.1213 -8.5291 -4.0449 18 1 -0.4843 -8.7986 -3.1922 19 6 0.2052 -9.3793 -5.1271 20 7 -0.4525 -10.5181 -5.1213 21 14 1.2532 -8.9136 -6.6016 22 1 2.6341 -9.4245 -6.4086 23 1 0.6718 -9.5109 -7.8307 24 1 1.2868 -7.4352 -6.7379 25 1 -0.3634 -0.1076 -1.0219 26 1 -0.3633 0.9389 0.4178 27 1 -0.3633 -0.8312 0.6043 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1326 0.0010 30 1 5.3516 -0.0001 0.0014 31 1 4.1206 -2.1324 -0.0001 32 1 2.9837 -3.5545 1.0913 33 1 1.7300 -2.8253 2.1231 34 1 1.3716 -4.3014 1.1948 35 1 0.5481 -4.8269 -0.8222 36 1 1.0427 -4.5429 -3.5885 37 1 2.4455 -5.3500 -2.8474 38 1 0.9486 -7.0863 -1.9031 39 1 -0.4545 -6.2797 -2.6439 40 1 0.5400 -6.6154 -4.8910 41 1 1.9430 -7.4218 -4.1493 42 1 -0.3937 -11.1161 -5.8827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931971710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = -38.714611 kcal Electronic energy + Delta-G solvation = -20509.122502 eV Core-core repulsion = 17452.969942 eV Total energy + Delta-G solvation = -3056.152560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47053 -38.85577 -35.54470 -34.46017 -33.27576 -32.79902 -31.43184 -29.65261 -27.25408 -26.98665 -24.94607 -23.12242 -21.99648 -21.15923 -20.59446 -19.47892 -17.17235 -16.91187 -16.58986 -15.73651 -15.67714 -15.19299 -14.76839 -14.22579 -14.13004 -13.98697 -13.70129 -13.42379 -13.22420 -12.78245 -12.70206 -12.56294 -12.32181 -12.07655 -12.00881 -11.91728 -11.69511 -11.09288 -11.04177 -10.89891 -10.86630 -10.17070 -9.96236 -9.77580 -9.51059 -9.23999 -8.88092 -8.84231 -8.69147 -8.56678 -6.07465 -4.06261 1.21397 1.31526 2.73680 3.29261 3.30632 3.38182 3.42565 3.73631 4.36489 4.43476 4.57068 4.76161 4.77285 4.90211 4.99533 5.03550 5.11027 5.26682 5.34442 5.37436 5.45360 5.50096 5.56900 5.62144 5.64812 5.67853 5.84826 5.95135 5.99996 6.00878 6.35428 6.36032 6.41456 6.43540 6.52472 6.69545 6.78635 6.90259 7.21554 7.35039 7.63910 7.75729 8.34652 8.49170 8.96243 9.54868 11.05773 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033553 B = 0.002991 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.289233 B = 9359.453779 C = 9603.148118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.128 4.128 6 C -0.084 4.084 7 C -0.063 4.063 8 C -0.079 4.079 9 H 0.108 0.892 10 C -0.142 4.142 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.726 5.726 14 C 0.114 3.886 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.067 3.933 20 N -0.903 5.903 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.264 1.264 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 22.002 14.787 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.063 4.063 8 C -0.100 4.100 9 H 0.126 0.874 10 C -0.199 4.199 11 C 0.298 3.702 12 O -0.412 6.412 13 N -0.377 5.377 14 C -0.008 4.008 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.946 22.177 14.046 26.713 hybrid contribution 0.273 -0.148 -0.626 0.699 sum 5.219 22.029 13.420 26.318 Atomic orbital electron populations 1.20875 0.91429 1.02664 1.02610 1.19719 0.95873 0.92601 0.99744 1.20939 0.94278 0.97141 1.01879 1.21093 0.94307 0.97929 1.00316 1.21081 0.99780 0.92479 1.01234 1.20897 0.93496 0.98095 0.97677 1.19137 0.93586 0.92710 1.00868 1.20413 1.02007 0.93350 0.94272 0.87424 1.21806 1.02306 0.99231 0.96560 1.20426 0.80188 0.81289 0.88305 1.90717 1.37193 1.66931 1.46316 1.46161 1.50248 1.20106 1.21168 1.21645 1.00680 0.93631 0.84886 1.21702 0.99228 0.93007 1.01143 1.19504 0.96837 0.96046 0.92528 1.21097 1.29135 1.01438 1.04342 0.91006 1.25025 0.95319 0.94718 0.98396 1.69907 1.42576 1.10437 1.31281 0.86781 0.80758 0.79398 0.82393 1.20236 1.21351 1.18905 0.90988 0.91493 0.91193 0.86242 0.86316 0.86246 0.86338 0.91788 0.91283 0.91457 0.76709 0.91865 0.91869 0.92129 0.92108 0.96333 0.96766 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.28 36.00 0.33 -0.64 16 2 C -0.08 -0.84 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.23 9.68 -39.59 -0.38 -1.62 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 6 C -0.08 -1.00 8.21 -39.59 -0.33 -1.32 16 7 C -0.06 -0.73 4.32 -104.62 -0.45 -1.18 16 8 C -0.08 -0.83 2.71 -92.92 -0.25 -1.08 16 9 H 0.11 0.92 5.54 -51.93 -0.29 0.64 16 10 C -0.14 -1.17 8.84 37.16 0.33 -0.84 16 11 C 0.51 7.24 7.05 -10.99 -0.08 7.16 16 12 O -0.54 -9.78 15.38 5.55 0.09 -9.70 16 13 N -0.73 -9.74 5.45 -60.29 -0.33 -10.06 16 14 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 15 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 16 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 17 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 21 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.44 8.05 -51.93 -0.42 0.02 16 27 H 0.07 0.49 6.33 -51.93 -0.33 0.16 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.12 1.39 7.27 -52.48 -0.38 1.01 16 32 H 0.06 0.57 7.11 -51.93 -0.37 0.20 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 35 H 0.40 4.23 7.89 -40.82 -0.32 3.91 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 41 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -33.50 343.04 -8.57 -42.07 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.66 Total: 0.57 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.94 Total: -18.20 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.45 Total: -37.02 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.50 -8.57 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931971710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.358 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds