Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38253 * 120.00219 * 2 1 4 4 C 1.38211 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99785 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.38219 * 120.00048 * 179.72701 * 2 1 3 8 8 C 1.50707 * 119.99720 * 359.97438 * 7 2 1 9 9 H 1.08996 * 109.47404 * 354.44621 * 8 7 2 10 10 C 1.53001 * 109.47081 * 234.44719 * 8 7 2 11 11 C 1.50702 * 109.47122 * 114.44905 * 8 7 2 12 12 O 1.21284 * 119.99937 * 359.97438 * 11 8 7 13 13 N 1.34768 * 120.00069 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00300 * 180.02562 * 13 11 8 15 15 C 1.53003 * 109.47268 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.46722 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.46553 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00183 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99942 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00594 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99685 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46992 * 90.00668 * 21 19 17 23 23 H 1.48510 * 109.46873 * 210.00167 * 21 19 17 24 24 H 1.48498 * 109.47306 * 330.00045 * 21 19 17 25 25 H 1.08996 * 109.47701 * 96.01173 * 1 2 3 26 26 H 1.09002 * 109.47041 * 336.00916 * 1 2 3 27 27 H 1.09000 * 109.47175 * 216.01483 * 1 2 3 28 28 H 1.08003 * 119.99725 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.99725 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99684 * 180.02562 * 5 4 3 31 31 H 1.08004 * 119.99962 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46921 * 300.00197 * 10 8 7 33 33 H 1.09000 * 109.46893 * 59.99996 * 10 8 7 34 34 H 1.08993 * 109.47064 * 180.02562 * 10 8 7 35 35 H 0.97003 * 120.00078 * 359.97438 * 13 11 8 36 36 H 1.09003 * 109.46645 * 299.99652 * 14 13 11 37 37 H 1.09000 * 109.46769 * 59.99653 * 14 13 11 38 38 H 1.09000 * 109.47023 * 300.00057 * 15 14 13 39 39 H 1.09002 * 109.46895 * 59.99579 * 15 14 13 40 40 H 1.09003 * 109.46900 * 299.99774 * 16 15 14 41 41 H 1.09000 * 109.47059 * 60.00110 * 16 15 14 42 42 H 0.96996 * 120.00479 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5806 -1.1970 -0.0005 7 6 2.1981 -1.1970 0.0057 8 6 1.4445 -2.5021 0.0125 9 1 0.3771 -2.3049 0.1114 10 6 1.9163 -3.3573 1.1902 11 6 1.7021 -3.2376 -1.2774 12 8 2.4259 -2.7499 -2.1195 13 7 1.1273 -4.4369 -1.4956 14 6 1.3781 -5.1522 -2.7493 15 6 0.6129 -6.4772 -2.7424 16 6 0.8755 -7.2244 -4.0515 17 6 0.1213 -8.5291 -4.0449 18 1 -0.4843 -8.7986 -3.1922 19 6 0.2052 -9.3793 -5.1271 20 7 -0.4525 -10.5181 -5.1213 21 14 1.2532 -8.9136 -6.6016 22 1 2.6341 -9.4245 -6.4086 23 1 0.6718 -9.5109 -7.8307 24 1 1.2868 -7.4352 -6.7379 25 1 -0.3634 -0.1076 -1.0219 26 1 -0.3633 0.9389 0.4178 27 1 -0.3633 -0.8312 0.6043 28 1 1.6582 2.1326 0.0004 29 1 4.1203 2.1326 0.0010 30 1 5.3516 -0.0001 0.0014 31 1 4.1206 -2.1324 -0.0001 32 1 2.9837 -3.5545 1.0913 33 1 1.7300 -2.8253 2.1231 34 1 1.3716 -4.3014 1.1948 35 1 0.5481 -4.8269 -0.8222 36 1 1.0427 -4.5429 -3.5885 37 1 2.4455 -5.3500 -2.8474 38 1 0.9486 -7.0863 -1.9031 39 1 -0.4545 -6.2797 -2.6439 40 1 0.5400 -6.6154 -4.8910 41 1 1.9430 -7.4218 -4.1493 42 1 -0.3937 -11.1161 -5.8827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931971710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = -58.983371 kcal Electronic energy + Delta-G solvation = -20510.001422 eV Core-core repulsion = 17452.969942 eV Total energy + Delta-G solvation = -3057.031479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41934 -39.81433 -36.99744 -35.38200 -35.04517 -33.56410 -33.16758 -30.50862 -28.87891 -27.68767 -25.90075 -24.60524 -22.95934 -22.23734 -21.99505 -20.59756 -18.98535 -18.01903 -17.65288 -16.90970 -16.67541 -16.30741 -16.23566 -15.55525 -15.33113 -14.94339 -14.79581 -14.53392 -14.30427 -13.95184 -13.82199 -13.76540 -13.39078 -13.23654 -12.98591 -12.76704 -12.71762 -12.69644 -12.48546 -11.93160 -11.81195 -11.78429 -11.60271 -11.56220 -11.33632 -10.77069 -10.74916 -10.07924 -9.66075 -9.46410 -8.30124 -6.33865 0.43216 0.53027 1.35827 1.37585 1.49227 1.64175 2.23013 2.35439 2.91536 3.05666 3.57076 3.77700 3.99271 4.06228 4.11329 4.17548 4.20747 4.22619 4.29857 4.47435 4.49710 4.64805 4.75524 4.82238 4.84790 4.87725 4.90041 4.94319 5.01354 5.03394 5.17484 5.24659 5.32860 5.39786 5.50307 5.55003 5.60878 5.64200 5.64833 5.74721 6.15788 6.26828 6.58843 6.74342 7.26743 7.31114 8.86266 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033553 B = 0.002991 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.289233 B = 9359.453779 C = 9603.148118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.142 4.142 6 C -0.105 4.105 7 C -0.082 4.082 8 C -0.070 4.070 9 H 0.130 0.870 10 C -0.139 4.139 11 C 0.512 3.488 12 O -0.580 6.580 13 N -0.716 5.716 14 C 0.127 3.873 15 C -0.099 4.099 16 C -0.013 4.013 17 C -0.530 4.530 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.284 1.284 24 H -0.249 1.249 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 23.962 15.403 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.123 4.123 7 C -0.082 4.082 8 C -0.091 4.091 9 H 0.148 0.852 10 C -0.196 4.196 11 C 0.299 3.701 12 O -0.459 6.459 13 N -0.368 5.368 14 C 0.003 3.997 15 C -0.137 4.137 16 C -0.051 4.051 17 C -0.568 4.568 18 H 0.057 0.943 19 C -0.191 4.191 20 N -0.591 5.591 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.173 1.173 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.080 24.140 14.703 28.718 hybrid contribution 0.197 -0.749 -0.751 1.079 sum 5.277 23.392 13.952 27.743 Atomic orbital electron populations 1.20924 0.89765 1.04246 1.02595 1.20080 0.97286 0.92503 0.99300 1.21312 0.94579 0.97963 1.01149 1.21431 0.94695 0.98537 0.99468 1.21342 1.00692 0.92591 1.01345 1.21014 0.94124 0.98296 0.98889 1.19352 0.93651 0.93626 1.01568 1.20425 1.03246 0.92750 0.92642 0.85207 1.21827 1.01775 0.99721 0.96296 1.21095 0.79002 0.80967 0.89027 1.90696 1.39157 1.67990 1.48107 1.45985 1.50366 1.19934 1.20494 1.21273 0.99675 0.92621 0.86104 1.21476 0.99888 0.93554 0.98800 1.19470 0.96179 0.94237 0.95165 1.21463 1.28751 1.03398 1.03181 0.94266 1.25963 0.96786 0.94611 1.01787 1.70048 1.44603 1.11871 1.32538 0.85720 0.79048 0.79897 0.78372 1.19263 1.20979 1.17300 0.91608 0.89748 0.89931 0.84011 0.84016 0.84985 0.87269 0.92865 0.89602 0.90044 0.74839 0.92796 0.92702 0.91567 0.91596 0.96254 0.96353 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.28 71.23 0.66 -0.99 16 2 C -0.09 -1.79 5.88 -19.87 -0.12 -1.91 16 3 C -0.13 -2.37 9.68 22.27 0.22 -2.15 16 4 C -0.12 -2.24 10.05 22.27 0.22 -2.01 16 5 C -0.14 -2.95 10.05 22.27 0.22 -2.72 16 6 C -0.11 -2.50 8.21 22.27 0.18 -2.32 16 7 C -0.08 -1.81 4.32 -19.86 -0.09 -1.90 16 8 C -0.07 -1.34 2.71 -12.28 -0.03 -1.37 16 9 H 0.13 1.88 5.54 -2.39 -0.01 1.87 16 10 C -0.14 -2.03 8.84 71.98 0.64 -1.39 16 11 C 0.51 13.92 7.05 87.66 0.62 14.54 16 12 O -0.58 -21.15 15.38 -3.04 -0.05 -21.20 16 13 N -0.72 -18.07 5.45 -463.05 -2.52 -20.59 16 14 C 0.13 4.05 5.67 86.38 0.49 4.54 16 15 C -0.10 -3.55 5.27 30.60 0.16 -3.39 16 16 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 17 C -0.53 -30.01 9.66 25.60 0.25 -29.77 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 19 C 0.01 0.32 5.47 84.65 0.46 0.78 16 20 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 21 Si 0.95 44.53 27.47 68.60 1.88 46.42 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 0.86 8.05 -2.39 -0.02 0.84 16 27 H 0.08 0.91 6.33 -2.39 -0.02 0.89 16 28 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 30 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.11 2.66 7.27 -2.91 -0.02 2.64 16 32 H 0.05 0.90 7.11 -2.39 -0.02 0.88 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.95 7.56 -2.39 -0.02 0.93 16 35 H 0.41 7.84 7.89 -92.71 -0.73 7.11 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.11 343.04 3.84 -69.28 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.21 Total: 15.61 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 4.01 Total: -30.52 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.22 Total: -79.58 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.42 kcal Total: -73.11 3.84 -69.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931971710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.295 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds