Wall clock time and date at job start Mon Mar 30 2020 01:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48505 * 109.47314 * 87.87521 * 3 2 1 5 5 H 1.48499 * 109.47245 * 207.87727 * 3 2 1 6 6 H 1.48498 * 109.47008 * 327.87927 * 3 2 1 7 7 C 1.37881 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99243 * 0.49705 * 7 2 1 9 9 C 1.50693 * 120.00180 * 180.50188 * 7 2 1 10 10 C 1.53002 * 115.54817 * 272.46226 * 9 7 2 11 11 N 1.46498 * 109.47208 * 296.85091 * 10 9 7 12 12 C 1.34776 * 120.00326 * 184.69471 * 11 10 9 13 13 O 1.21276 * 119.99775 * 4.47564 * 12 11 10 14 14 C 1.50703 * 120.00079 * 184.47644 * 12 11 10 15 15 H 1.09000 * 115.50819 * 332.36946 * 14 12 11 16 16 C 1.52999 * 117.42736 * 117.63168 * 14 12 11 17 17 H 1.08999 * 119.99238 * 355.25069 * 16 14 12 18 18 C 1.53002 * 117.42875 * 187.00956 * 14 12 11 19 19 H 1.09000 * 119.98559 * 4.74356 * 18 14 12 20 20 C 1.55923 * 117.17332 * 159.54486 * 18 14 12 21 21 H 1.09001 * 115.92442 * 263.05555 * 20 18 14 22 22 C 1.55923 * 104.49733 * 133.36191 * 20 18 14 23 23 C 1.54577 * 104.64619 * 289.72767 * 22 20 18 24 24 C 1.55929 * 104.64555 * 359.97438 * 23 22 20 25 25 H 1.09000 * 115.92500 * 199.97297 * 24 23 22 26 26 C 1.56955 * 100.65183 * 29.30748 * 20 18 14 27 27 C 1.53005 * 117.49890 * 126.75663 * 9 7 2 28 28 C 1.53000 * 117.50228 * 58.13407 * 9 7 2 29 29 H 0.96996 * 119.99555 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47315 * 56.85385 * 10 9 7 31 31 H 1.09005 * 109.47245 * 176.85544 * 10 9 7 32 32 H 0.97003 * 120.00162 * 4.69610 * 11 10 9 33 33 H 1.09007 * 110.40005 * 48.51987 * 22 20 18 34 34 H 1.09004 * 110.40235 * 170.93113 * 22 20 18 35 35 H 1.09002 * 110.40267 * 241.20787 * 23 22 20 36 36 H 1.08996 * 110.40308 * 118.78630 * 23 22 20 37 37 H 1.08990 * 112.02761 * 170.30080 * 26 20 18 38 38 H 1.09001 * 112.02754 * 296.74921 * 26 20 18 39 39 H 1.08989 * 117.49885 * 359.97438 * 27 9 7 40 40 H 1.09000 * 117.49698 * 145.01981 * 27 9 7 41 41 H 1.09004 * 117.49855 * 214.98270 * 28 9 7 42 42 H 1.09001 * 117.49916 * 359.97090 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4518 2.0724 1.3991 5 1 3.5685 1.4276 -0.6546 6 1 1.4698 2.6393 -0.7444 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0072 9 6 3.5115 -1.1940 0.0120 10 6 4.1818 -1.1293 -1.3619 11 7 3.8354 -2.3270 -2.1312 12 6 4.3904 -2.5343 -3.3417 13 8 5.2369 -1.7727 -3.7591 14 6 3.9592 -3.7125 -4.1766 15 1 3.5915 -4.5737 -3.6186 16 6 3.3040 -3.4171 -5.5272 17 1 3.0946 -2.3876 -5.8177 18 6 4.7393 -3.9874 -5.4638 19 1 5.6184 -3.3903 -5.7061 20 6 4.6443 -5.4247 -6.0608 21 1 5.4600 -6.1014 -5.8060 22 6 4.3751 -5.1993 -7.5800 23 6 2.9304 -4.6532 -7.6441 24 6 2.4625 -4.6006 -6.1576 25 1 1.3847 -4.5688 -5.9981 26 6 3.2139 -5.8478 -5.5724 27 6 4.2097 -2.0105 1.1014 28 6 4.2092 -0.4821 1.1727 29 1 -0.4849 0.8401 -0.0004 30 1 3.8356 -0.2431 -1.8937 31 1 5.2634 -1.0784 -1.2365 32 1 3.2065 -2.9708 -1.7693 33 1 5.0756 -4.4695 -7.9858 34 1 4.4496 -6.1416 -8.1230 35 1 2.2946 -5.3269 -8.2186 36 1 2.9207 -3.6548 -8.0814 37 1 2.8828 -6.7779 -6.0341 38 1 3.1497 -5.8923 -4.4852 39 1 3.5792 -2.5472 1.8101 40 1 5.1468 -2.5018 0.8395 41 1 5.1460 0.0321 0.9576 42 1 3.5783 -0.0133 1.9278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935781512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:54 Heat of formation + Delta-G solvation = 22.014330 kcal Electronic energy + Delta-G solvation = -21377.125464 eV Core-core repulsion = 18323.606308 eV Total energy + Delta-G solvation = -3053.519156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24379 -38.79410 -37.01721 -33.46376 -33.39298 -32.14692 -28.96303 -28.21238 -27.09311 -25.48756 -23.55082 -21.74438 -21.68607 -20.26688 -19.45409 -18.75385 -18.63176 -17.20642 -16.45483 -15.99269 -15.46938 -15.17085 -15.04626 -14.31897 -14.09919 -13.37731 -13.05196 -12.84994 -12.61815 -12.50271 -12.32063 -12.00365 -11.62463 -11.50379 -11.36843 -11.22315 -11.17436 -10.97169 -10.81696 -10.52909 -10.40952 -10.19389 -9.81143 -9.68764 -9.62008 -9.36038 -9.19324 -8.67897 -8.57837 -8.27531 -6.17846 -4.22611 2.86991 3.26725 3.37293 3.42295 3.57080 3.97963 4.35674 4.38224 4.40356 4.42537 4.89013 4.98861 5.02513 5.04375 5.10408 5.15436 5.20584 5.28378 5.35006 5.43671 5.48161 5.67839 5.69131 5.82188 5.87726 5.96735 6.00537 6.01074 6.05123 6.06427 6.17477 6.25244 6.26327 6.31068 6.41626 6.51360 6.69301 6.97227 7.05900 7.14811 7.66193 8.20066 8.39012 8.78690 8.82106 9.45413 10.93389 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.004338 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.025490 B = 6452.327727 C = 6789.487612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.257 1.257 6 H -0.294 1.294 7 C -0.491 4.491 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.156 3.844 11 N -0.697 5.697 12 C 0.536 3.464 13 O -0.561 6.561 14 C -0.164 4.164 15 H 0.122 0.878 16 C -0.131 4.131 17 H 0.119 0.881 18 C -0.132 4.132 19 H 0.120 0.880 20 C -0.074 4.074 21 H 0.100 0.900 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.072 4.072 25 H 0.102 0.898 26 C -0.139 4.139 27 C -0.178 4.178 28 C -0.193 4.193 29 H 0.265 0.735 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.406 0.594 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 -10.992 -11.390 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.181 1.181 6 H -0.220 1.220 7 C -0.528 4.528 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.033 3.967 11 N -0.345 5.345 12 C 0.322 3.678 13 O -0.441 6.441 14 C -0.185 4.185 15 H 0.140 0.860 16 C -0.150 4.150 17 H 0.137 0.863 18 C -0.151 4.151 19 H 0.138 0.862 20 C -0.092 4.092 21 H 0.118 0.882 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.090 4.090 25 H 0.120 0.880 26 C -0.176 4.176 27 C -0.215 4.215 28 C -0.231 4.231 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.241 0.759 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.097 -10.295 -11.686 17.115 hybrid contribution 0.032 0.861 0.391 0.946 sum 7.129 -9.434 -11.295 16.353 Atomic orbital electron populations 1.69884 1.06368 1.27258 1.49613 1.24961 0.94573 0.99119 0.93575 0.86864 0.80793 0.83326 0.78401 1.20417 1.18117 1.22046 1.20180 0.86015 0.94516 1.52099 0.90356 1.19617 0.95293 1.00791 0.86011 1.21129 0.96826 0.86639 0.92111 1.45783 1.45676 1.25405 1.17661 1.19533 0.81352 0.85296 0.81641 1.90635 1.33030 1.48297 1.72114 1.22362 1.05839 0.99464 0.90837 0.86034 1.24053 0.95439 0.99251 0.96215 0.86293 1.23535 0.96194 0.97464 0.97880 0.86215 1.23169 0.97135 0.94086 0.94833 0.88209 1.22508 0.96789 1.00651 0.95399 1.22531 0.96044 1.01113 0.95867 1.23590 0.98324 0.92594 0.94509 0.87963 1.23749 0.95295 0.97587 1.00930 1.22834 1.01087 0.93050 1.04529 1.22939 1.01429 0.94953 1.03774 0.92474 0.92095 0.93582 0.75921 0.91583 0.91784 0.91710 0.91530 0.90839 0.90388 0.89394 0.90913 0.90753 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.41 24.84 -169.99 -4.22 17.19 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.26 -6.05 5.74 56.52 0.32 -5.72 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.49 -12.84 9.10 -34.44 -0.31 -13.15 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C -0.02 -0.35 0.86 -155.66 -0.13 -0.49 16 10 C 0.16 3.36 5.18 -4.04 -0.02 3.34 16 11 N -0.70 -13.34 5.46 -60.29 -0.33 -13.67 16 12 C 0.54 9.95 7.60 -10.98 -0.08 9.87 16 13 O -0.56 -12.22 16.36 5.56 0.09 -12.13 16 14 C -0.16 -2.35 5.39 -91.77 -0.49 -2.85 16 15 H 0.12 1.52 5.96 -51.93 -0.31 1.22 16 16 C -0.13 -1.72 6.40 -86.87 -0.56 -2.28 16 17 H 0.12 1.72 8.14 -51.93 -0.42 1.29 16 18 C -0.13 -1.69 5.87 -88.23 -0.52 -2.21 16 19 H 0.12 1.71 7.85 -51.93 -0.41 1.30 16 20 C -0.07 -0.73 5.18 -85.35 -0.44 -1.17 16 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.12 -1.03 6.21 -24.34 -0.15 -1.18 16 23 C -0.12 -1.08 6.20 -24.34 -0.15 -1.23 16 24 C -0.07 -0.75 5.22 -84.00 -0.44 -1.19 16 25 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 26 C -0.14 -1.32 6.23 -22.46 -0.14 -1.46 16 27 C -0.18 -3.44 9.95 -26.73 -0.27 -3.71 16 28 C -0.19 -4.00 7.51 -26.73 -0.20 -4.20 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 1.44 6.79 -51.93 -0.35 1.09 16 31 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.41 7.27 8.27 -40.82 -0.34 6.94 16 33 H 0.07 0.60 8.04 -51.93 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.77 5.91 -51.93 -0.31 0.46 16 39 H 0.09 1.70 8.14 -51.94 -0.42 1.27 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.09 1.95 7.15 -51.93 -0.37 1.58 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -30.13 328.65 -9.52 -39.65 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.78 Total: 9.32 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -4.01 Total: -19.76 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.44 Total: -39.21 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.22 Total: 17.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.13 -9.52 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.659 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds