Wall clock time and date at job start Mon Mar 30 2020 01:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48505 * 109.47314 * 87.87521 * 3 2 1 5 5 H 1.48499 * 109.47245 * 207.87727 * 3 2 1 6 6 H 1.48498 * 109.47008 * 327.87927 * 3 2 1 7 7 C 1.37881 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99243 * 0.49705 * 7 2 1 9 9 C 1.50693 * 120.00180 * 180.50188 * 7 2 1 10 10 C 1.53002 * 115.54817 * 272.46226 * 9 7 2 11 11 N 1.46498 * 109.47208 * 296.85091 * 10 9 7 12 12 C 1.34776 * 120.00326 * 184.69471 * 11 10 9 13 13 O 1.21276 * 119.99775 * 4.47564 * 12 11 10 14 14 C 1.50703 * 120.00079 * 184.47644 * 12 11 10 15 15 H 1.09000 * 115.50819 * 332.36946 * 14 12 11 16 16 C 1.52999 * 117.42736 * 117.63168 * 14 12 11 17 17 H 1.08999 * 119.99238 * 355.25069 * 16 14 12 18 18 C 1.53002 * 117.42875 * 187.00956 * 14 12 11 19 19 H 1.09000 * 119.98559 * 4.74356 * 18 14 12 20 20 C 1.55923 * 117.17332 * 159.54486 * 18 14 12 21 21 H 1.09001 * 115.92442 * 263.05555 * 20 18 14 22 22 C 1.55923 * 104.49733 * 133.36191 * 20 18 14 23 23 C 1.54577 * 104.64619 * 289.72767 * 22 20 18 24 24 C 1.55929 * 104.64555 * 359.97438 * 23 22 20 25 25 H 1.09000 * 115.92500 * 199.97297 * 24 23 22 26 26 C 1.56955 * 100.65183 * 29.30748 * 20 18 14 27 27 C 1.53005 * 117.49890 * 126.75663 * 9 7 2 28 28 C 1.53000 * 117.50228 * 58.13407 * 9 7 2 29 29 H 0.96996 * 119.99555 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47315 * 56.85385 * 10 9 7 31 31 H 1.09005 * 109.47245 * 176.85544 * 10 9 7 32 32 H 0.97003 * 120.00162 * 4.69610 * 11 10 9 33 33 H 1.09007 * 110.40005 * 48.51987 * 22 20 18 34 34 H 1.09004 * 110.40235 * 170.93113 * 22 20 18 35 35 H 1.09002 * 110.40267 * 241.20787 * 23 22 20 36 36 H 1.08996 * 110.40308 * 118.78630 * 23 22 20 37 37 H 1.08990 * 112.02761 * 170.30080 * 26 20 18 38 38 H 1.09001 * 112.02754 * 296.74921 * 26 20 18 39 39 H 1.08989 * 117.49885 * 359.97438 * 27 9 7 40 40 H 1.09000 * 117.49698 * 145.01981 * 27 9 7 41 41 H 1.09004 * 117.49855 * 214.98270 * 28 9 7 42 42 H 1.09001 * 117.49916 * 359.97090 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4518 2.0724 1.3991 5 1 3.5685 1.4276 -0.6546 6 1 1.4698 2.6393 -0.7444 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 -0.0072 9 6 3.5115 -1.1940 0.0120 10 6 4.1818 -1.1293 -1.3619 11 7 3.8354 -2.3270 -2.1312 12 6 4.3904 -2.5343 -3.3417 13 8 5.2369 -1.7727 -3.7591 14 6 3.9592 -3.7125 -4.1766 15 1 3.5915 -4.5737 -3.6186 16 6 3.3040 -3.4171 -5.5272 17 1 3.0946 -2.3876 -5.8177 18 6 4.7393 -3.9874 -5.4638 19 1 5.6184 -3.3903 -5.7061 20 6 4.6443 -5.4247 -6.0608 21 1 5.4600 -6.1014 -5.8060 22 6 4.3751 -5.1993 -7.5800 23 6 2.9304 -4.6532 -7.6441 24 6 2.4625 -4.6006 -6.1576 25 1 1.3847 -4.5688 -5.9981 26 6 3.2139 -5.8478 -5.5724 27 6 4.2097 -2.0105 1.1014 28 6 4.2092 -0.4821 1.1727 29 1 -0.4849 0.8401 -0.0004 30 1 3.8356 -0.2431 -1.8937 31 1 5.2634 -1.0784 -1.2365 32 1 3.2065 -2.9708 -1.7693 33 1 5.0756 -4.4695 -7.9858 34 1 4.4496 -6.1416 -8.1230 35 1 2.2946 -5.3269 -8.2186 36 1 2.9207 -3.6548 -8.0814 37 1 2.8828 -6.7779 -6.0341 38 1 3.1497 -5.8923 -4.4852 39 1 3.5792 -2.5472 1.8101 40 1 5.1468 -2.5018 0.8395 41 1 5.1460 0.0321 0.9576 42 1 3.5783 -0.0133 1.9278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:53 Heat of formation + Delta-G solvation = 4.282481 kcal Electronic energy + Delta-G solvation = -21377.894374 eV Core-core repulsion = 18323.606308 eV Total energy + Delta-G solvation = -3054.288066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22971 -40.27521 -38.69929 -35.02253 -34.45755 -34.22546 -29.76958 -29.09581 -28.62735 -27.41468 -24.82933 -23.36809 -22.54791 -21.55047 -21.12536 -19.95929 -19.53747 -18.62508 -18.20623 -17.02022 -16.91453 -16.68780 -16.36444 -15.90311 -15.58684 -14.88842 -14.75971 -14.30670 -13.93944 -13.88711 -13.72574 -13.16859 -13.11412 -12.70784 -12.44080 -12.38236 -12.21852 -12.15549 -12.01690 -11.98107 -11.80716 -11.59829 -11.20882 -11.03502 -10.97251 -10.73465 -10.69329 -10.58992 -10.33503 -9.92314 -8.31723 -6.38024 1.31120 1.37487 1.46052 1.48459 2.18057 2.34423 2.84130 3.03403 3.17479 3.42978 3.57168 3.59850 3.95549 3.99032 4.01129 4.08970 4.14411 4.29489 4.33445 4.39008 4.46017 4.46920 4.49937 4.60124 4.70609 4.79313 4.83757 4.89631 5.05391 5.06196 5.08689 5.19635 5.23271 5.25434 5.26697 5.27254 5.40866 5.45664 5.52965 5.54536 5.67978 6.26694 6.65798 6.72407 7.27429 7.32954 8.82763 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025611 B = 0.004338 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.025490 B = 6452.327727 C = 6789.487612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.029 3.971 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.244 1.244 6 H -0.302 1.302 7 C -0.478 4.478 8 H 0.048 0.952 9 C -0.040 4.040 10 C 0.165 3.835 11 N -0.697 5.697 12 C 0.532 3.468 13 O -0.597 6.597 14 C -0.172 4.172 15 H 0.144 0.856 16 C -0.139 4.139 17 H 0.096 0.904 18 C -0.126 4.126 19 H 0.100 0.900 20 C -0.067 4.067 21 H 0.116 0.884 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.070 4.070 25 H 0.107 0.893 26 C -0.133 4.133 27 C -0.151 4.151 28 C -0.192 4.192 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.411 0.589 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -12.804 -11.963 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.168 1.168 6 H -0.230 1.230 7 C -0.516 4.516 8 H 0.066 0.934 9 C -0.041 4.041 10 C 0.041 3.959 11 N -0.345 5.345 12 C 0.320 3.680 13 O -0.480 6.480 14 C -0.193 4.193 15 H 0.161 0.839 16 C -0.158 4.158 17 H 0.115 0.885 18 C -0.145 4.145 19 H 0.118 0.882 20 C -0.085 4.085 21 H 0.134 0.866 22 C -0.151 4.151 23 C -0.154 4.154 24 C -0.088 4.088 25 H 0.125 0.875 26 C -0.170 4.170 27 C -0.188 4.188 28 C -0.230 4.230 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.532 -12.130 -12.250 19.235 hybrid contribution -0.414 1.386 0.553 1.549 sum 8.118 -10.744 -11.696 17.836 Atomic orbital electron populations 1.70006 1.07969 1.27878 1.52276 1.25666 0.95074 1.02292 0.93892 0.86068 0.80068 0.79664 0.78898 1.19135 1.16763 1.22957 1.20335 0.88312 0.93002 1.49955 0.93406 1.19446 0.93090 1.04325 0.87210 1.20875 0.97032 0.86561 0.91466 1.45786 1.45869 1.24894 1.17995 1.20242 0.80422 0.85931 0.81378 1.90606 1.34677 1.49957 1.72731 1.22341 1.07480 0.98378 0.91092 0.83895 1.24168 0.96967 0.99513 0.95172 0.88539 1.23619 0.95093 0.99497 0.96271 0.88211 1.23265 0.98029 0.91965 0.95218 0.86583 1.22525 0.96262 1.01583 0.94765 1.22551 0.96683 1.01218 0.94987 1.23669 0.98325 0.91542 0.95268 0.87480 1.23765 0.94526 0.97853 1.00884 1.22862 1.01453 0.92499 1.02013 1.23007 1.01786 0.96145 1.02060 0.92632 0.94865 0.92659 0.75294 0.92263 0.89516 0.89715 0.92489 0.88570 0.90683 0.89371 0.88158 0.88515 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 2 C 0.03 1.63 5.47 84.66 0.46 2.10 16 3 Si 0.93 44.29 24.84 68.60 1.70 45.99 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.24 -11.06 5.74 99.48 0.57 -10.49 16 6 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 7 C -0.48 -25.30 9.10 25.60 0.23 -25.07 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 9 C -0.04 -1.71 0.86 -52.93 -0.05 -1.76 16 10 C 0.16 6.98 5.18 86.38 0.45 7.43 16 11 N -0.70 -26.61 5.46 -463.06 -2.53 -29.14 16 12 C 0.53 19.88 7.60 87.66 0.67 20.55 16 13 O -0.60 -26.48 16.36 -3.02 -0.05 -26.52 16 14 C -0.17 -4.86 5.39 -11.54 -0.06 -4.92 16 15 H 0.14 3.37 5.96 -2.39 -0.01 3.36 16 16 C -0.14 -3.64 6.40 -8.36 -0.05 -3.70 16 17 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 18 C -0.13 -3.14 5.87 -9.25 -0.05 -3.19 16 19 H 0.10 2.89 7.85 -2.39 -0.02 2.87 16 20 C -0.07 -1.13 5.18 -7.38 -0.04 -1.17 16 21 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 22 C -0.11 -1.70 6.21 32.14 0.20 -1.50 16 23 C -0.12 -1.86 6.20 32.14 0.20 -1.66 16 24 C -0.07 -1.32 5.22 -6.51 -0.03 -1.36 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 C -0.13 -2.12 6.23 33.36 0.21 -1.91 16 27 C -0.15 -5.47 9.95 30.60 0.30 -5.17 16 28 C -0.19 -7.49 7.51 30.59 0.23 -7.26 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.03 1.58 6.79 -2.39 -0.02 1.56 16 31 H 0.06 2.24 8.07 -2.38 -0.02 2.22 16 32 H 0.41 14.69 8.27 -92.71 -0.77 13.92 16 33 H 0.06 0.97 8.04 -2.38 -0.02 0.95 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.01 8.04 -2.39 -0.02 0.99 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.25 5.91 -2.39 -0.01 1.24 16 39 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 42 H 0.08 3.31 7.15 -2.39 -0.02 3.29 16 Total: -1.00 -66.33 328.65 2.20 -64.13 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.11 Total: 30.80 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 2.66 Total: -28.59 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.23 Total: -85.81 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.52 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.70 Total: 45.99 kcal Total: -66.33 2.20 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.409 kcal (2) G-P(sol) polarization free energy of solvation -66.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds