Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46514 * 223.67792 * 3 2 1 5 5 C 1.37095 * 119.99361 * 88.24621 * 4 3 2 6 6 H 1.08011 * 119.99497 * 164.70611 * 5 4 3 7 7 C 1.38949 * 120.00669 * 344.70564 * 5 4 3 8 8 N 1.31410 * 119.99604 * 1.36042 * 7 5 4 9 9 Si 1.86797 * 120.00290 * 181.35637 * 7 5 4 10 10 H 1.48491 * 109.47028 * 90.00255 * 9 7 5 11 11 H 1.48500 * 109.46938 * 210.00183 * 9 7 5 12 12 H 1.48501 * 109.46984 * 329.99959 * 9 7 5 13 13 C 1.34771 * 120.00390 * 268.24112 * 4 3 2 14 14 O 1.21295 * 120.00100 * 5.14424 * 13 4 3 15 15 C 1.50697 * 120.00299 * 185.14868 * 13 4 3 16 16 C 1.53004 * 109.63843 * 301.36116 * 15 13 4 17 17 C 1.53391 * 109.64503 * 61.77683 * 15 13 4 18 18 C 1.53025 * 108.43426 * 52.46812 * 17 15 13 19 19 C 1.50063 * 110.14964 * 49.43388 * 18 17 15 20 20 C 1.50702 * 117.96528 * 162.84408 * 19 18 17 21 21 C 1.29449 * 124.07594 * 342.86768 * 19 18 17 22 22 C 1.50700 * 117.96114 * 180.49095 * 21 19 18 23 23 C 1.50160 * 124.14476 * 0.24138 * 21 19 18 24 24 H 4.40637 * 5.51321 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47056 * 103.68755 * 3 2 1 26 26 H 1.08992 * 109.47125 * 343.67903 * 3 2 1 27 27 H 0.96995 * 120.00042 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47080 * 53.83493 * 16 15 13 29 29 H 1.09004 * 109.47366 * 293.83921 * 16 15 13 30 30 H 1.09001 * 109.47522 * 173.83757 * 16 15 13 31 31 H 1.08997 * 109.64086 * 172.14547 * 17 15 13 32 32 H 1.08994 * 109.64569 * 292.57281 * 17 15 13 33 33 H 1.09003 * 109.35599 * 169.64224 * 18 17 15 34 34 H 1.09000 * 109.35826 * 289.36327 * 18 17 15 35 35 H 1.09003 * 109.46505 * 95.31627 * 20 19 18 36 36 H 1.08998 * 109.47717 * 215.31377 * 20 19 18 37 37 H 1.09001 * 109.47063 * 335.32194 * 20 19 18 38 38 H 1.08993 * 109.47168 * 64.49302 * 22 21 19 39 39 H 1.09005 * 109.46916 * 184.48945 * 22 21 19 40 40 H 1.08997 * 109.47371 * 304.48540 * 22 21 19 41 41 H 1.08997 * 109.56291 * 222.97821 * 23 21 19 42 42 H 1.09003 * 109.20950 * 103.36231 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9999 0.9540 5 6 3.3281 0.6565 2.2669 6 1 3.9102 1.2977 2.9123 7 6 2.7762 -0.5164 2.7674 8 7 2.0905 -1.3099 1.9755 9 14 3.0090 -0.9652 4.5656 10 1 1.8969 -0.3935 5.3664 11 1 3.0143 -2.4432 4.7102 12 1 4.3010 -0.4160 5.0496 13 6 3.3916 2.2566 0.5408 14 8 3.1322 2.5861 -0.5973 15 6 4.0023 3.2524 1.4929 16 6 3.0956 3.4191 2.7140 17 6 5.3837 2.7581 1.9401 18 6 6.2077 2.4309 0.6928 19 6 6.1474 3.5716 -0.2804 20 6 7.1843 3.6242 -1.3727 21 6 5.2603 4.5134 -0.2399 22 6 5.3216 5.5878 -1.2949 23 6 4.1701 4.6007 0.7891 24 1 -1.0501 -0.0002 -0.0004 25 1 3.0093 0.2440 -0.9985 26 1 3.0098 -0.9854 0.2888 27 1 1.7055 -2.1289 2.3247 28 1 2.8951 2.4420 3.1538 29 1 2.1560 3.8798 2.4089 30 1 3.5896 4.0541 3.4494 31 1 5.8833 3.5377 2.5151 32 1 5.2721 1.8645 2.5541 33 1 7.2445 2.2558 0.9804 34 1 5.8074 1.5339 0.2204 35 1 6.7831 3.1662 -2.2768 36 1 7.4452 4.6627 -1.5765 37 1 8.0746 3.0815 -1.0550 38 1 5.1310 5.1473 -2.2735 39 1 4.5678 6.3466 -1.0850 40 1 6.3103 6.0466 -1.2893 41 1 3.2327 4.8749 0.3052 42 1 4.4310 5.3620 1.5243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935811271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 48.431420 kcal Electronic energy + Delta-G solvation = -22911.057221 eV Core-core repulsion = 19858.683596 eV Total energy + Delta-G solvation = -3052.373625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08276 -37.36271 -35.03388 -34.07162 -31.71609 -31.45412 -31.08604 -28.42959 -26.84772 -25.98146 -24.88202 -23.99385 -22.31069 -21.16920 -18.73582 -18.01904 -16.85651 -16.04942 -15.30993 -14.68811 -14.42295 -14.33776 -14.23869 -13.88198 -13.70959 -13.15567 -13.12302 -12.30381 -12.26177 -12.03927 -11.93640 -11.66918 -11.64958 -11.50840 -11.43788 -11.19496 -11.17548 -11.12031 -10.91331 -10.62235 -10.44314 -10.23828 -9.71745 -9.47131 -9.30723 -9.03995 -8.54996 -8.18318 -7.90906 -7.82677 -6.26677 -3.92210 2.80635 3.09102 3.17646 3.19441 3.83866 4.00551 4.14946 4.38354 4.98315 5.04167 5.17035 5.24825 5.46607 5.58750 5.71907 5.78331 5.80521 5.85881 5.88808 5.96420 6.06375 6.10443 6.17609 6.26172 6.29342 6.32724 6.40871 6.42136 6.49306 6.56874 6.67923 6.72189 6.87082 6.96043 7.04259 7.19723 7.26309 7.32264 7.45486 7.66300 7.75412 8.39052 9.04526 9.08644 9.53366 9.93133 10.65567 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.007250 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.382321 B = 3861.064931 C = 4389.678527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.081 4.081 3 C 0.235 3.765 4 N -0.445 5.445 5 C -0.336 4.336 6 H 0.121 0.879 7 C 0.032 3.968 8 N -0.868 5.868 9 Si 0.918 3.082 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.480 3.520 14 O -0.594 6.594 15 C -0.059 4.059 16 C -0.163 4.163 17 C -0.113 4.113 18 C -0.075 4.075 19 C -0.137 4.137 20 C -0.116 4.116 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.053 4.053 24 H 0.194 0.806 25 H 0.056 0.944 26 H 0.128 0.872 27 H 0.268 0.732 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.556 6.509 0.116 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.083 4.083 3 C 0.112 3.888 4 N -0.163 5.163 5 C -0.463 4.463 6 H 0.138 0.862 7 C -0.172 4.172 8 N -0.507 5.507 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.269 3.731 14 O -0.479 6.479 15 C -0.062 4.062 16 C -0.220 4.220 17 C -0.151 4.151 18 C -0.112 4.112 19 C -0.137 4.137 20 C -0.172 4.172 21 C -0.106 4.106 22 C -0.169 4.169 23 C -0.091 4.091 24 H 0.212 0.788 25 H 0.074 0.926 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.362 6.449 -0.424 9.069 hybrid contribution -0.418 -0.431 0.987 1.155 sum 5.944 6.018 0.562 8.477 Atomic orbital electron populations 1.24161 0.95341 1.05613 1.06599 1.23332 0.94454 0.95657 0.94848 1.18463 0.83942 0.95361 0.90984 1.43631 1.56727 1.07228 1.08717 1.20131 1.32579 1.07556 0.86055 0.86242 1.25316 0.95739 0.96522 0.99584 1.69991 1.33522 1.12808 1.34348 0.86051 0.78821 0.78038 0.82605 1.20352 1.20818 1.19359 1.19881 0.82556 0.82574 0.88136 1.90532 1.58151 1.78316 1.20930 1.20489 0.95787 0.94290 0.95638 1.22269 0.98246 1.04999 0.96447 1.21849 0.93671 1.02074 0.97464 1.20295 0.99319 0.96933 0.94663 1.20504 0.98064 0.96786 0.98364 1.20916 0.97347 1.01355 0.97609 1.20450 0.96002 0.96741 0.97423 1.20871 1.00707 0.97265 0.98049 1.20236 0.97426 0.95692 0.95705 0.78840 0.92639 0.85472 0.92098 0.87802 0.93481 0.93502 0.92443 0.89009 0.92065 0.90855 0.92143 0.92213 0.92913 0.92021 0.92875 0.92402 0.90911 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.01 19.25 29.55 0.57 -6.44 16 2 C -0.08 -2.05 11.50 -37.12 -0.43 -2.48 16 3 C 0.23 5.81 5.17 -6.82 -0.04 5.77 16 4 N -0.44 -10.81 2.59 -117.93 -0.30 -11.12 16 5 C -0.34 -7.92 6.82 -14.93 -0.10 -8.02 16 6 H 0.12 2.61 3.01 -52.48 -0.16 2.45 16 7 C 0.03 0.77 5.38 -17.47 -0.09 0.67 16 8 N -0.87 -21.86 8.25 55.50 0.46 -21.40 16 9 Si 0.92 18.81 29.55 -169.99 -5.02 13.79 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 13 C 0.48 11.29 4.75 -10.99 -0.05 11.24 16 14 O -0.59 -15.55 14.78 5.54 0.08 -15.47 16 15 C -0.06 -1.15 0.50 -155.45 -0.08 -1.23 16 16 C -0.16 -3.00 8.10 37.16 0.30 -2.70 16 17 C -0.11 -1.99 4.63 -26.52 -0.12 -2.12 16 18 C -0.08 -1.31 5.25 -28.18 -0.15 -1.46 16 19 C -0.14 -2.34 5.63 -100.94 -0.57 -2.91 16 20 C -0.12 -1.64 9.18 36.01 0.33 -1.31 16 21 C -0.11 -1.83 4.96 -100.90 -0.50 -2.33 16 22 C -0.11 -1.63 8.68 36.01 0.31 -1.32 16 23 C -0.05 -0.96 4.12 -28.13 -0.12 -1.07 16 24 H 0.19 3.77 7.80 -54.09 -0.42 3.34 16 25 H 0.06 1.36 7.44 -51.93 -0.39 0.97 16 26 H 0.13 3.20 6.03 -51.93 -0.31 2.89 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.10 2.10 4.47 -51.93 -0.23 1.87 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.09 1.69 5.18 -51.93 -0.27 1.42 16 33 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.07 1.47 7.41 -51.93 -0.38 1.08 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.74 6.06 -51.93 -0.31 0.43 16 37 H 0.05 0.67 7.98 -51.93 -0.41 0.26 16 38 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 39 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 40 H 0.06 0.72 6.77 -51.93 -0.35 0.37 16 41 H 0.07 1.41 7.78 -51.93 -0.40 1.01 16 42 H 0.06 1.00 8.10 -51.93 -0.42 0.57 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -28.11 323.38 -6.79 -34.90 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.15 Total: 10.14 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.73 Total: -15.71 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.15 Total: -32.52 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.11 -6.79 -34.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.331 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds