Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46514 * 223.67792 * 3 2 1 5 5 C 1.37095 * 119.99361 * 88.24621 * 4 3 2 6 6 H 1.08011 * 119.99497 * 164.70611 * 5 4 3 7 7 C 1.38949 * 120.00669 * 344.70564 * 5 4 3 8 8 N 1.31410 * 119.99604 * 1.36042 * 7 5 4 9 9 Si 1.86797 * 120.00290 * 181.35637 * 7 5 4 10 10 H 1.48491 * 109.47028 * 90.00255 * 9 7 5 11 11 H 1.48500 * 109.46938 * 210.00183 * 9 7 5 12 12 H 1.48501 * 109.46984 * 329.99959 * 9 7 5 13 13 C 1.34771 * 120.00390 * 268.24112 * 4 3 2 14 14 O 1.21295 * 120.00100 * 5.14424 * 13 4 3 15 15 C 1.50697 * 120.00299 * 185.14868 * 13 4 3 16 16 C 1.53004 * 109.63843 * 301.36116 * 15 13 4 17 17 C 1.53391 * 109.64503 * 61.77683 * 15 13 4 18 18 C 1.53025 * 108.43426 * 52.46812 * 17 15 13 19 19 C 1.50063 * 110.14964 * 49.43388 * 18 17 15 20 20 C 1.50702 * 117.96528 * 162.84408 * 19 18 17 21 21 C 1.29449 * 124.07594 * 342.86768 * 19 18 17 22 22 C 1.50700 * 117.96114 * 180.49095 * 21 19 18 23 23 C 1.50160 * 124.14476 * 0.24138 * 21 19 18 24 24 H 4.40637 * 5.51321 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.47056 * 103.68755 * 3 2 1 26 26 H 1.08992 * 109.47125 * 343.67903 * 3 2 1 27 27 H 0.96995 * 120.00042 * 179.97438 * 8 7 5 28 28 H 1.09007 * 109.47080 * 53.83493 * 16 15 13 29 29 H 1.09004 * 109.47366 * 293.83921 * 16 15 13 30 30 H 1.09001 * 109.47522 * 173.83757 * 16 15 13 31 31 H 1.08997 * 109.64086 * 172.14547 * 17 15 13 32 32 H 1.08994 * 109.64569 * 292.57281 * 17 15 13 33 33 H 1.09003 * 109.35599 * 169.64224 * 18 17 15 34 34 H 1.09000 * 109.35826 * 289.36327 * 18 17 15 35 35 H 1.09003 * 109.46505 * 95.31627 * 20 19 18 36 36 H 1.08998 * 109.47717 * 215.31377 * 20 19 18 37 37 H 1.09001 * 109.47063 * 335.32194 * 20 19 18 38 38 H 1.08993 * 109.47168 * 64.49302 * 22 21 19 39 39 H 1.09005 * 109.46916 * 184.48945 * 22 21 19 40 40 H 1.08997 * 109.47371 * 304.48540 * 22 21 19 41 41 H 1.08997 * 109.56291 * 222.97821 * 23 21 19 42 42 H 1.09003 * 109.20950 * 103.36231 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9999 0.9540 5 6 3.3281 0.6565 2.2669 6 1 3.9102 1.2977 2.9123 7 6 2.7762 -0.5164 2.7674 8 7 2.0905 -1.3099 1.9755 9 14 3.0090 -0.9652 4.5656 10 1 1.8969 -0.3935 5.3664 11 1 3.0143 -2.4432 4.7102 12 1 4.3010 -0.4160 5.0496 13 6 3.3916 2.2566 0.5408 14 8 3.1322 2.5861 -0.5973 15 6 4.0023 3.2524 1.4929 16 6 3.0956 3.4191 2.7140 17 6 5.3837 2.7581 1.9401 18 6 6.2077 2.4309 0.6928 19 6 6.1474 3.5716 -0.2804 20 6 7.1843 3.6242 -1.3727 21 6 5.2603 4.5134 -0.2399 22 6 5.3216 5.5878 -1.2949 23 6 4.1701 4.6007 0.7891 24 1 -1.0501 -0.0002 -0.0004 25 1 3.0093 0.2440 -0.9985 26 1 3.0098 -0.9854 0.2888 27 1 1.7055 -2.1289 2.3247 28 1 2.8951 2.4420 3.1538 29 1 2.1560 3.8798 2.4089 30 1 3.5896 4.0541 3.4494 31 1 5.8833 3.5377 2.5151 32 1 5.2721 1.8645 2.5541 33 1 7.2445 2.2558 0.9804 34 1 5.8074 1.5339 0.2204 35 1 6.7831 3.1662 -2.2768 36 1 7.4452 4.6627 -1.5765 37 1 8.0746 3.0815 -1.0550 38 1 5.1310 5.1473 -2.2735 39 1 4.5678 6.3466 -1.0850 40 1 6.3103 6.0466 -1.2893 41 1 3.2327 4.8749 0.3052 42 1 4.4310 5.3620 1.5243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935811271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 35.044936 kcal Electronic energy + Delta-G solvation = -22911.637702 eV Core-core repulsion = 19858.683596 eV Total energy + Delta-G solvation = -3052.954106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69102 -38.93626 -36.91592 -35.54132 -33.58555 -33.07688 -32.64523 -29.78655 -28.44565 -27.49399 -26.70317 -25.33141 -23.68309 -22.81454 -20.50300 -19.74012 -18.61719 -17.68978 -16.94799 -16.23186 -16.14419 -15.76184 -15.62439 -15.51887 -15.21632 -14.81498 -14.54358 -14.00998 -13.82478 -13.60533 -13.32961 -13.18130 -13.15060 -12.95032 -12.78702 -12.65876 -12.62825 -12.53941 -12.40410 -12.08688 -12.01170 -11.83011 -11.28602 -11.16522 -11.09443 -10.64387 -10.44930 -10.01008 -9.74011 -9.19329 -8.09629 -5.79987 1.46013 1.50404 1.51066 1.60098 2.00044 2.18896 2.36642 2.45805 3.22045 3.25046 3.81053 3.89449 3.95855 4.07347 4.25008 4.36196 4.51621 4.57731 4.63135 4.67912 4.75025 4.76968 4.83553 4.86853 4.97911 5.01470 5.03184 5.11748 5.13410 5.19086 5.20410 5.22886 5.31260 5.37429 5.44424 5.48412 5.54483 5.69585 5.89840 5.99413 6.37798 6.52141 7.13956 7.21530 7.69149 8.08688 8.82881 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.007250 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.382321 B = 3861.064931 C = 4389.678527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.127 4.127 3 C 0.238 3.762 4 N -0.453 5.453 5 C -0.342 4.342 6 H 0.139 0.861 7 C -0.014 4.014 8 N -0.895 5.895 9 Si 0.981 3.019 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.250 1.250 13 C 0.471 3.529 14 O -0.630 6.630 15 C -0.059 4.059 16 C -0.158 4.158 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.151 4.151 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.109 4.109 23 C -0.052 4.052 24 H 0.232 0.768 25 H 0.043 0.957 26 H 0.117 0.883 27 H 0.263 0.737 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 8.078 1.738 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.171 5.171 5 C -0.468 4.468 6 H 0.156 0.844 7 C -0.214 4.214 8 N -0.535 5.535 9 Si 0.805 3.195 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.173 1.173 13 C 0.262 3.738 14 O -0.517 6.517 15 C -0.062 4.062 16 C -0.215 4.215 17 C -0.145 4.145 18 C -0.113 4.113 19 C -0.151 4.151 20 C -0.168 4.168 21 C -0.122 4.122 22 C -0.165 4.165 23 C -0.090 4.090 24 H 0.248 0.752 25 H 0.061 0.939 26 H 0.135 0.865 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.069 0.931 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.586 8.027 1.205 11.110 hybrid contribution -0.852 -0.932 0.422 1.332 sum 6.734 7.094 1.627 9.916 Atomic orbital electron populations 1.25070 0.96373 1.03892 1.04881 1.23717 0.95292 0.97324 0.96509 1.18287 0.84308 0.95204 0.90647 1.43850 1.56643 1.07531 1.09043 1.20591 1.32522 1.07839 0.85841 0.84375 1.26129 0.95571 0.96474 1.03225 1.70142 1.34565 1.12993 1.35789 0.85082 0.79317 0.77138 0.77939 1.20688 1.21533 1.17314 1.20697 0.81902 0.82820 0.88418 1.90493 1.59566 1.78969 1.22709 1.20554 0.96668 0.93862 0.95107 1.22214 0.98094 1.04553 0.96661 1.21824 0.92676 1.02457 0.97572 1.20292 1.00478 0.95787 0.94694 1.20755 0.99067 0.96287 0.99020 1.20911 0.96972 1.02830 0.96133 1.20722 0.95589 0.97914 0.98024 1.20861 1.02485 0.96646 0.96512 1.20250 0.96856 0.95350 0.96512 0.75186 0.93882 0.86514 0.92619 0.89666 0.94480 0.89786 0.89373 0.90050 0.89640 0.94436 0.93235 0.90179 0.91530 0.93050 0.92247 0.89801 0.93102 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.31 19.25 74.32 1.43 -11.88 16 2 C -0.13 -6.59 11.50 31.13 0.36 -6.23 16 3 C 0.24 12.35 5.17 84.57 0.44 12.79 16 4 N -0.45 -22.59 2.59 -645.41 -1.67 -24.26 16 5 C -0.34 -16.14 6.82 84.04 0.57 -15.57 16 6 H 0.14 5.89 3.01 -2.90 -0.01 5.88 16 7 C -0.01 -0.66 5.38 84.93 0.46 -0.21 16 8 N -0.90 -46.02 8.25 21.66 0.18 -45.84 16 9 Si 0.98 38.12 29.55 68.60 2.03 40.15 16 10 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.29 -11.48 7.11 99.48 0.71 -10.78 16 12 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 13 C 0.47 22.57 4.75 87.66 0.42 22.99 16 14 O -0.63 -34.07 14.78 -3.08 -0.05 -34.11 16 15 C -0.06 -2.23 0.50 -52.79 -0.03 -2.25 16 16 C -0.16 -5.56 8.10 71.98 0.58 -4.98 16 17 C -0.11 -3.58 4.63 30.73 0.14 -3.44 16 18 C -0.08 -2.55 5.25 29.66 0.16 -2.40 16 19 C -0.15 -4.93 5.63 -15.10 -0.08 -5.01 16 20 C -0.11 -2.96 9.18 71.24 0.65 -2.31 16 21 C -0.12 -4.03 4.96 -15.07 -0.07 -4.11 16 22 C -0.11 -2.94 8.68 71.24 0.62 -2.32 16 23 C -0.05 -1.80 4.12 29.69 0.12 -1.68 16 24 H 0.23 8.56 7.80 -4.41 -0.03 8.52 16 25 H 0.04 2.26 7.44 -2.39 -0.02 2.24 16 26 H 0.12 6.21 6.03 -2.39 -0.01 6.20 16 27 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 28 H 0.08 3.34 4.47 -2.38 -0.01 3.33 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 32 H 0.08 2.86 5.18 -2.39 -0.01 2.84 16 33 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.04 1.53 7.41 -2.39 -0.02 1.51 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.76 6.06 -2.39 -0.01 1.75 16 37 H 0.07 1.54 7.98 -2.39 -0.02 1.52 16 38 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 39 H 0.06 1.50 7.93 -2.38 -0.02 1.48 16 40 H 0.08 1.81 6.77 -2.39 -0.02 1.79 16 41 H 0.05 1.95 7.78 -2.39 -0.02 1.93 16 42 H 0.09 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -61.94 323.38 7.27 -54.67 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 1.01 Total: 36.00 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 5.76 Total: -26.60 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -1.49 Total: -70.11 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.05 Total: -34.11 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -61.94 7.27 -54.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.719 kcal (2) G-P(sol) polarization free energy of solvation -61.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds