Wall clock time and date at job start Mon Mar 30 2020 02:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46853 * 246.30064 * 3 2 1 5 5 C 1.37106 * 119.99884 * 257.69523 * 4 3 2 6 6 H 1.07993 * 120.00185 * 338.05470 * 5 4 3 7 7 C 1.38953 * 119.99804 * 158.05283 * 5 4 3 8 8 N 1.31408 * 120.00070 * 340.86838 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 160.86818 * 7 5 4 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47001 * 120.00259 * 9 7 5 12 12 H 1.48501 * 109.46951 * 239.99823 * 9 7 5 13 13 C 1.34774 * 120.00155 * 77.69888 * 4 3 2 14 14 O 1.21300 * 120.00105 * 188.13409 * 13 4 3 15 15 C 1.50700 * 120.00092 * 8.13475 * 13 4 3 16 16 C 1.52999 * 109.64084 * 299.51380 * 15 13 4 17 17 C 1.53390 * 109.64310 * 178.87530 * 15 13 4 18 18 C 1.53023 * 108.43812 * 172.87924 * 17 15 13 19 19 C 1.50077 * 110.14595 * 49.43841 * 18 17 15 20 20 C 1.50697 * 117.96099 * 162.84828 * 19 18 17 21 21 C 1.29252 * 124.01343 * 342.74045 * 19 18 17 22 22 C 1.50705 * 117.81102 * 180.60382 * 21 19 18 23 23 C 1.50062 * 124.22282 * 0.72601 * 21 19 18 24 24 H 4.40637 * 5.51578 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46976 * 126.30082 * 3 2 1 26 26 H 1.08998 * 109.46925 * 6.30100 * 3 2 1 27 27 H 0.97003 * 120.00132 * 185.03463 * 8 7 5 28 28 H 1.08995 * 109.47111 * 198.40819 * 16 15 13 29 29 H 1.08999 * 109.46870 * 318.41268 * 16 15 13 30 30 H 1.09001 * 109.47001 * 78.40916 * 16 15 13 31 31 H 1.08995 * 109.64361 * 292.56502 * 17 15 13 32 32 H 1.08997 * 109.64195 * 52.98579 * 17 15 13 33 33 H 1.09006 * 109.36066 * 169.64180 * 18 17 15 34 34 H 1.09000 * 109.36232 * 289.23608 * 18 17 15 35 35 H 1.08999 * 109.47246 * 89.99908 * 20 19 18 36 36 H 1.09001 * 109.46992 * 210.00525 * 20 19 18 37 37 H 1.09002 * 109.47177 * 329.99897 * 20 19 18 38 38 H 1.09005 * 109.46686 * 270.11297 * 22 21 19 39 39 H 1.08990 * 109.47500 * 30.11896 * 22 21 19 40 40 H 1.09006 * 109.46809 * 150.12164 * 22 21 19 41 41 H 1.09004 * 109.35818 * 222.51361 * 23 21 19 42 42 H 1.09003 * 109.35751 * 102.79231 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5560 1.2647 5 6 3.6005 1.8444 1.3130 6 1 3.9430 2.3289 0.4107 7 6 3.6326 2.5267 2.5230 8 7 2.8948 2.1149 3.5294 9 14 4.7247 4.0296 2.7191 10 1 5.4487 4.2845 1.4479 11 1 3.8878 5.2089 3.0567 12 1 5.7051 3.7903 3.8085 13 6 3.1246 -0.1995 2.3808 14 8 3.3876 0.3007 3.4541 15 6 2.7872 -1.6657 2.2953 16 6 1.3734 -1.8363 1.7359 17 6 2.8741 -2.2970 3.6905 18 6 2.3564 -3.7345 3.6044 19 6 3.0136 -4.4531 2.4625 20 6 2.9480 -5.9585 2.4435 21 6 3.6305 -3.8598 1.4940 22 6 4.2290 -4.7193 0.4103 23 6 3.7908 -2.3720 1.3811 24 1 -1.0501 0.0002 -0.0001 25 1 3.0091 0.6092 -0.8282 26 1 3.0098 -1.0206 -0.1128 27 1 2.8608 2.6319 4.3494 28 1 1.0070 -2.8352 1.9727 29 1 0.7138 -1.0921 2.1821 30 1 1.3921 -1.7032 0.6542 31 1 3.9107 -2.3005 4.0272 32 1 2.2637 -1.7257 4.3898 33 1 2.5797 -4.2554 4.5356 34 1 1.2775 -3.7213 3.4499 35 1 2.0549 -6.2764 1.9056 36 1 3.8327 -6.3544 1.9449 37 1 2.9090 -6.3335 3.4662 38 1 5.2527 -4.9810 0.6782 39 1 3.6384 -5.6286 0.3000 40 1 4.2290 -4.1695 -0.5309 41 1 3.6164 -2.0670 0.3492 42 1 4.8035 -2.0945 1.6737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935811273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:41 Heat of formation + Delta-G solvation = 96.003633 kcal Electronic energy + Delta-G solvation = -22883.948631 eV Core-core repulsion = 19833.637892 eV Total energy + Delta-G solvation = -3050.310739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06035 -37.61736 -34.75761 -34.01925 -32.11339 -31.59243 -30.97133 -27.94366 -26.69212 -26.27201 -25.20497 -24.21746 -22.57448 -20.90438 -18.82253 -17.59368 -16.29624 -16.14081 -15.69777 -15.07197 -14.54268 -14.51096 -14.31022 -13.82048 -13.63733 -13.48259 -13.09710 -12.75215 -12.53262 -12.25658 -12.00673 -11.75439 -11.57064 -11.48307 -11.41802 -11.08816 -11.03539 -10.87617 -10.81086 -10.39614 -10.13482 -10.12285 -9.84008 -9.51973 -9.45924 -9.15847 -8.99386 -8.18911 -7.84056 -6.79929 -5.30366 -3.55749 2.49894 3.37330 3.39093 3.46218 3.48676 3.52301 4.41757 4.61315 4.94147 5.06296 5.12387 5.20389 5.35468 5.48215 5.54185 5.58419 5.63271 5.72282 5.72749 5.81630 5.87712 5.93676 6.02922 6.06373 6.08948 6.14710 6.19281 6.25871 6.32990 6.44577 6.50458 6.62412 6.63681 6.73274 6.80224 6.91022 7.09432 7.14337 7.41286 7.61134 8.30039 8.35349 9.11737 9.34834 9.84228 10.64728 11.10270 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.006485 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.343390 B = 4316.668235 C = 4693.654449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.188 3.812 4 N -0.448 5.448 5 C -0.332 4.332 6 H 0.085 0.915 7 C 0.010 3.990 8 N -0.737 5.737 9 Si 0.917 3.083 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.403 3.597 14 O -0.461 6.461 15 C -0.066 4.066 16 C -0.152 4.152 17 C -0.085 4.085 18 C -0.080 4.080 19 C -0.134 4.134 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.075 4.075 24 H 0.206 0.794 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.246 0.754 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -12.748 -5.355 13.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.155 4.155 3 C 0.065 3.935 4 N -0.169 5.169 5 C -0.460 4.460 6 H 0.103 0.897 7 C -0.201 4.201 8 N -0.381 5.381 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.191 3.809 14 O -0.331 6.331 15 C -0.070 4.070 16 C -0.209 4.209 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.134 4.134 20 C -0.176 4.176 21 C -0.120 4.120 22 C -0.179 4.179 23 C -0.111 4.111 24 H 0.223 0.777 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.923 -12.529 -4.549 13.361 hybrid contribution 0.020 0.764 0.126 0.774 sum -0.903 -11.765 -4.423 12.602 Atomic orbital electron populations 1.24630 0.95705 1.03919 1.02264 1.23838 0.95314 0.97489 0.98861 1.19130 0.83225 1.00384 0.90774 1.43417 1.56262 1.11593 1.05631 1.19367 1.40476 0.90489 0.95620 0.89700 1.25009 1.00658 0.99055 0.95354 1.70436 1.34932 1.28708 1.04045 0.86008 0.79936 0.81515 0.77970 1.19981 1.21679 1.21230 1.19563 0.90522 0.86245 0.84536 1.90653 1.48122 1.66252 1.28118 1.20713 0.95095 0.95714 0.95516 1.22659 0.95990 1.00694 1.01578 1.21286 1.01505 0.93177 0.96343 1.20471 0.99640 0.95852 0.95760 1.20578 1.00957 0.94889 0.97009 1.20989 1.01587 0.93429 1.01621 1.20668 0.99644 0.95577 0.96133 1.21025 1.00353 0.99055 0.97451 1.20709 0.99826 0.90661 0.99902 0.77675 0.89669 0.88645 0.94040 0.93360 0.92746 0.90921 0.92128 0.91242 0.91980 0.91160 0.92162 0.91891 0.92582 0.91987 0.91891 0.92247 0.90205 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.41 17.69 29.55 0.52 -3.89 16 2 C -0.15 -3.02 9.61 -37.12 -0.36 -3.38 16 3 C 0.19 3.74 5.47 -6.83 -0.04 3.70 16 4 N -0.45 -11.20 2.63 -117.93 -0.31 -11.51 16 5 C -0.33 -9.12 9.59 -14.93 -0.14 -9.26 16 6 H 0.09 2.20 7.83 -52.49 -0.41 1.79 16 7 C 0.01 0.27 4.73 -17.47 -0.08 0.19 16 8 N -0.74 -22.40 9.27 55.50 0.51 -21.89 16 9 Si 0.92 22.18 29.60 -169.99 -5.03 17.15 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.40 10.32 5.98 -10.99 -0.07 10.26 16 14 O -0.46 -13.79 11.02 5.54 0.06 -13.73 16 15 C -0.07 -1.33 0.50 -155.45 -0.08 -1.41 16 16 C -0.15 -2.85 6.06 37.16 0.23 -2.62 16 17 C -0.09 -1.64 4.34 -26.52 -0.12 -1.76 16 18 C -0.08 -1.23 5.15 -28.17 -0.15 -1.37 16 19 C -0.13 -1.90 5.37 -100.89 -0.54 -2.44 16 20 C -0.12 -1.34 8.80 36.00 0.32 -1.02 16 21 C -0.12 -1.75 5.56 -100.89 -0.56 -2.31 16 22 C -0.12 -1.42 8.80 36.01 0.32 -1.10 16 23 C -0.07 -1.28 4.20 -28.18 -0.12 -1.40 16 24 H 0.21 2.90 7.80 -54.08 -0.42 2.48 16 25 H 0.09 1.56 7.90 -51.93 -0.41 1.15 16 26 H 0.10 1.65 3.24 -51.93 -0.17 1.48 16 27 H 0.25 7.22 8.32 -40.82 -0.34 6.88 16 28 H 0.05 0.81 5.24 -51.93 -0.27 0.54 16 29 H 0.05 1.16 7.06 -51.93 -0.37 0.79 16 30 H 0.07 1.30 3.60 -51.93 -0.19 1.11 16 31 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 32 H 0.07 1.49 7.89 -51.93 -0.41 1.08 16 33 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.07 1.05 6.53 -51.93 -0.34 0.71 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 6.19 -51.93 -0.32 0.32 16 37 H 0.06 0.58 8.03 -51.93 -0.42 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.65 6.19 -51.93 -0.32 0.32 16 40 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 41 H 0.08 1.29 4.59 -51.93 -0.24 1.05 16 42 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -32.67 314.75 -6.83 -39.50 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.94 Total: 3.56 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -0.86 Total: -17.82 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.20 Total: -33.40 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.06 Total: -13.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.67 -6.83 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.505 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds