Wall clock time and date at job start Mon Mar 30 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46853 * 246.30064 * 3 2 1 5 5 C 1.37106 * 119.99884 * 257.69523 * 4 3 2 6 6 H 1.07993 * 120.00185 * 338.05470 * 5 4 3 7 7 C 1.38953 * 119.99804 * 158.05283 * 5 4 3 8 8 N 1.31408 * 120.00070 * 340.86838 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 160.86818 * 7 5 4 10 10 H 1.48498 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47001 * 120.00259 * 9 7 5 12 12 H 1.48501 * 109.46951 * 239.99823 * 9 7 5 13 13 C 1.34774 * 120.00155 * 77.69888 * 4 3 2 14 14 O 1.21300 * 120.00105 * 188.13409 * 13 4 3 15 15 C 1.50700 * 120.00092 * 8.13475 * 13 4 3 16 16 C 1.52999 * 109.64084 * 299.51380 * 15 13 4 17 17 C 1.53390 * 109.64310 * 178.87530 * 15 13 4 18 18 C 1.53023 * 108.43812 * 172.87924 * 17 15 13 19 19 C 1.50077 * 110.14595 * 49.43841 * 18 17 15 20 20 C 1.50697 * 117.96099 * 162.84828 * 19 18 17 21 21 C 1.29252 * 124.01343 * 342.74045 * 19 18 17 22 22 C 1.50705 * 117.81102 * 180.60382 * 21 19 18 23 23 C 1.50062 * 124.22282 * 0.72601 * 21 19 18 24 24 H 4.40637 * 5.51578 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.46976 * 126.30082 * 3 2 1 26 26 H 1.08998 * 109.46925 * 6.30100 * 3 2 1 27 27 H 0.97003 * 120.00132 * 185.03463 * 8 7 5 28 28 H 1.08995 * 109.47111 * 198.40819 * 16 15 13 29 29 H 1.08999 * 109.46870 * 318.41268 * 16 15 13 30 30 H 1.09001 * 109.47001 * 78.40916 * 16 15 13 31 31 H 1.08995 * 109.64361 * 292.56502 * 17 15 13 32 32 H 1.08997 * 109.64195 * 52.98579 * 17 15 13 33 33 H 1.09006 * 109.36066 * 169.64180 * 18 17 15 34 34 H 1.09000 * 109.36232 * 289.23608 * 18 17 15 35 35 H 1.08999 * 109.47246 * 89.99908 * 20 19 18 36 36 H 1.09001 * 109.46992 * 210.00525 * 20 19 18 37 37 H 1.09002 * 109.47177 * 329.99897 * 20 19 18 38 38 H 1.09005 * 109.46686 * 270.11297 * 22 21 19 39 39 H 1.08990 * 109.47500 * 30.11896 * 22 21 19 40 40 H 1.09006 * 109.46809 * 150.12164 * 22 21 19 41 41 H 1.09004 * 109.35818 * 222.51361 * 23 21 19 42 42 H 1.09003 * 109.35751 * 102.79231 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.5560 1.2647 5 6 3.6005 1.8444 1.3130 6 1 3.9430 2.3289 0.4107 7 6 3.6326 2.5267 2.5230 8 7 2.8948 2.1149 3.5294 9 14 4.7247 4.0296 2.7191 10 1 5.4487 4.2845 1.4479 11 1 3.8878 5.2089 3.0567 12 1 5.7051 3.7903 3.8085 13 6 3.1246 -0.1995 2.3808 14 8 3.3876 0.3007 3.4541 15 6 2.7872 -1.6657 2.2953 16 6 1.3734 -1.8363 1.7359 17 6 2.8741 -2.2970 3.6905 18 6 2.3564 -3.7345 3.6044 19 6 3.0136 -4.4531 2.4625 20 6 2.9480 -5.9585 2.4435 21 6 3.6305 -3.8598 1.4940 22 6 4.2290 -4.7193 0.4103 23 6 3.7908 -2.3720 1.3811 24 1 -1.0501 0.0002 -0.0001 25 1 3.0091 0.6092 -0.8282 26 1 3.0098 -1.0206 -0.1128 27 1 2.8608 2.6319 4.3494 28 1 1.0070 -2.8352 1.9727 29 1 0.7138 -1.0921 2.1821 30 1 1.3921 -1.7032 0.6542 31 1 3.9107 -2.3005 4.0272 32 1 2.2637 -1.7257 4.3898 33 1 2.5797 -4.2554 4.5356 34 1 1.2775 -3.7213 3.4499 35 1 2.0549 -6.2764 1.9056 36 1 3.8327 -6.3544 1.9449 37 1 2.9090 -6.3335 3.4662 38 1 5.2527 -4.9810 0.6782 39 1 3.6384 -5.6286 0.3000 40 1 4.2290 -4.1695 -0.5309 41 1 3.6164 -2.0670 0.3492 42 1 4.8035 -2.0945 1.6737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935811273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:40 Heat of formation + Delta-G solvation = 77.391389 kcal Electronic energy + Delta-G solvation = -22884.755718 eV Core-core repulsion = 19833.637892 eV Total energy + Delta-G solvation = -3051.117826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62895 -39.19605 -36.59244 -35.53162 -33.84908 -33.15976 -32.54307 -29.23386 -28.24206 -27.61427 -26.72779 -25.97457 -23.83558 -22.67043 -20.49154 -19.15742 -18.10669 -17.55523 -17.41204 -16.62181 -16.32240 -15.91597 -15.60363 -15.29137 -15.25092 -15.02393 -14.55389 -14.12554 -14.01457 -13.62572 -13.38856 -13.21792 -13.10914 -12.93903 -12.77568 -12.65954 -12.51134 -12.33840 -12.28837 -12.25056 -11.99053 -11.63833 -11.38873 -11.10561 -11.07704 -10.90666 -10.50207 -9.85415 -9.27490 -8.88676 -7.42750 -5.70941 1.39268 1.41624 1.46452 1.55294 1.87986 2.03127 2.44233 2.79437 3.28641 3.37049 3.65766 3.76859 3.85958 4.09131 4.21582 4.28521 4.36992 4.43530 4.54723 4.57047 4.63836 4.67576 4.76886 4.86125 4.91389 4.97990 5.01161 5.05212 5.06503 5.14233 5.18149 5.25274 5.27540 5.29093 5.31081 5.40747 5.49856 5.57028 5.90943 6.22132 6.30080 6.83271 7.03919 7.35136 7.83614 8.66601 8.97521 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.006485 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.343390 B = 4316.668235 C = 4693.654449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.199 4.199 3 C 0.185 3.815 4 N -0.461 5.461 5 C -0.349 4.349 6 H 0.096 0.904 7 C -0.046 4.046 8 N -0.776 5.776 9 Si 0.981 3.019 10 H -0.254 1.254 11 H -0.285 1.285 12 H -0.298 1.298 13 C 0.390 3.610 14 O -0.516 6.516 15 C -0.062 4.062 16 C -0.137 4.137 17 C -0.083 4.083 18 C -0.074 4.074 19 C -0.135 4.135 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.118 4.118 23 C -0.068 4.068 24 H 0.241 0.759 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.236 0.764 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -15.111 -7.443 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.201 4.201 3 C 0.063 3.937 4 N -0.181 5.181 5 C -0.478 4.478 6 H 0.114 0.886 7 C -0.253 4.253 8 N -0.421 5.421 9 Si 0.808 3.192 10 H -0.178 1.178 11 H -0.212 1.212 12 H -0.226 1.226 13 C 0.179 3.821 14 O -0.390 6.390 15 C -0.065 4.065 16 C -0.194 4.194 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.172 4.172 21 C -0.132 4.132 22 C -0.174 4.174 23 C -0.104 4.104 24 H 0.257 0.743 25 H 0.116 0.884 26 H 0.138 0.862 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.373 -14.901 -6.696 16.393 hybrid contribution 0.107 1.495 0.759 1.680 sum -1.266 -13.406 -5.937 14.716 Atomic orbital electron populations 1.25495 0.96608 1.01827 0.99898 1.23905 0.95780 0.99466 1.00908 1.19317 0.83895 1.01752 0.88687 1.43637 1.56079 1.11043 1.07364 1.19788 1.40506 0.91631 0.95838 0.88631 1.25931 1.02008 1.02077 0.95272 1.70716 1.37013 1.30116 1.04282 0.85018 0.77994 0.78133 0.78092 1.17799 1.21175 1.22550 1.20561 0.89193 0.88278 0.84026 1.90624 1.50211 1.68162 1.30001 1.20610 0.96969 0.92114 0.96834 1.22509 0.94081 1.00880 1.01888 1.21217 0.99801 0.95808 0.95271 1.20429 1.00049 0.92978 0.97648 1.20777 1.00150 0.96867 0.95739 1.20999 1.02977 0.90503 1.02711 1.20696 1.00783 0.93928 0.97825 1.21028 1.00816 0.99214 0.96354 1.20599 0.97572 0.92870 0.99404 0.74252 0.88447 0.86218 0.95158 0.90967 0.95979 0.89676 0.94174 0.94646 0.90311 0.90359 0.90625 0.90489 0.91764 0.91245 0.89863 0.91631 0.89106 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.41 17.69 74.32 1.31 -6.10 16 2 C -0.20 -7.62 9.61 31.12 0.30 -7.32 16 3 C 0.19 7.26 5.47 84.57 0.46 7.72 16 4 N -0.46 -23.58 2.63 -645.42 -1.70 -25.28 16 5 C -0.35 -19.63 9.59 84.04 0.81 -18.82 16 6 H 0.10 4.98 7.83 -2.91 -0.02 4.96 16 7 C -0.05 -2.73 4.73 84.93 0.40 -2.33 16 8 N -0.78 -49.72 9.27 21.66 0.20 -49.52 16 9 Si 0.98 47.01 29.60 68.60 2.03 49.04 16 10 H -0.25 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 13 C 0.39 20.81 5.98 87.66 0.52 21.33 16 14 O -0.52 -32.81 11.02 -3.09 -0.03 -32.84 16 15 C -0.06 -2.50 0.50 -52.79 -0.03 -2.53 16 16 C -0.14 -5.01 6.06 71.98 0.44 -4.57 16 17 C -0.08 -3.31 4.34 30.73 0.13 -3.18 16 18 C -0.07 -2.17 5.15 29.66 0.15 -2.01 16 19 C -0.14 -3.43 5.37 -14.91 -0.08 -3.51 16 20 C -0.12 -2.07 8.80 71.24 0.63 -1.44 16 21 C -0.13 -3.51 5.56 -14.91 -0.08 -3.60 16 22 C -0.12 -2.27 8.80 71.24 0.63 -1.65 16 23 C -0.07 -2.28 4.20 29.66 0.12 -2.16 16 24 H 0.24 5.97 7.80 -4.41 -0.03 5.93 16 25 H 0.10 3.49 7.90 -2.39 -0.02 3.47 16 26 H 0.12 3.99 3.24 -2.39 -0.01 3.98 16 27 H 0.24 14.71 8.32 -92.71 -0.77 13.94 16 28 H 0.07 2.26 5.24 -2.39 -0.01 2.25 16 29 H 0.02 0.92 7.06 -2.39 -0.02 0.90 16 30 H 0.08 2.89 3.60 -2.39 -0.01 2.89 16 31 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.03 1.61 7.89 -2.39 -0.02 1.59 16 33 H 0.08 2.04 8.09 -2.38 -0.02 2.02 16 34 H 0.08 2.17 6.53 -2.39 -0.02 2.16 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.19 6.19 -2.39 -0.01 1.18 16 37 H 0.06 1.07 8.03 -2.39 -0.02 1.05 16 38 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.08 1.29 6.19 -2.39 -0.01 1.28 16 40 H 0.06 1.19 8.03 -2.38 -0.02 1.17 16 41 H 0.09 2.78 4.59 -2.38 -0.01 2.77 16 42 H 0.05 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -75.53 314.75 7.24 -68.29 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.02 Total: 20.46 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 5.72 Total: -30.15 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.50 Total: -74.80 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.03 Total: -32.84 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -75.53 7.24 -68.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935811273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.680 kcal (2) G-P(sol) polarization free energy of solvation -75.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds