Wall clock time and date at job start Mon Mar 30 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53783 * 113.61325 * 2 1 4 4 C 1.53774 * 87.08381 * 220.02065 * 3 2 1 5 5 N 1.46893 * 113.61755 * 139.98106 * 4 3 2 6 6 C 1.46905 * 111.00028 * 77.22508 * 5 4 3 7 7 C 1.46901 * 111.00320 * 201.18194 * 5 4 3 8 8 C 1.50706 * 109.46973 * 169.99959 * 7 5 4 9 9 C 1.38304 * 119.92825 * 269.72504 * 8 7 5 10 10 C 1.38102 * 120.06170 * 179.72670 * 9 8 7 11 11 C 1.38875 * 119.93587 * 0.57168 * 10 9 8 12 12 O 1.35743 * 120.07278 * 179.68125 * 11 10 9 13 13 C 1.34831 * 117.00221 * 185.63509 * 12 11 10 14 14 H 1.08005 * 120.00265 * 354.93564 * 13 12 11 15 15 C 1.38659 * 120.00173 * 174.93443 * 13 12 11 16 16 N 1.31556 * 119.99905 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99800 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47339 * 90.00099 * 17 15 13 19 19 H 1.48498 * 109.47039 * 209.99938 * 17 15 13 20 20 H 1.48499 * 109.47359 * 329.99719 * 17 15 13 21 21 C 1.38879 * 119.86023 * 359.70580 * 11 10 9 22 22 C 1.38100 * 119.92898 * 359.97438 * 21 11 10 23 23 C 1.53782 * 113.61249 * 262.50752 * 2 1 3 24 24 H 1.08995 * 109.47485 * 157.49359 * 1 2 3 25 25 H 1.09000 * 109.47465 * 37.49088 * 1 2 3 26 26 H 1.08997 * 109.47178 * 277.49285 * 1 2 3 27 27 H 1.08999 * 112.85033 * 131.30873 * 2 1 3 28 28 H 1.09007 * 113.61403 * 334.57261 * 3 2 1 29 29 H 1.09007 * 113.61353 * 105.46987 * 3 2 1 30 30 H 1.08999 * 113.69383 * 270.88071 * 4 3 2 31 31 H 1.09004 * 109.46348 * 65.22723 * 6 5 4 32 32 H 1.08997 * 109.47205 * 185.22123 * 6 5 4 33 33 H 1.08998 * 109.47155 * 305.22937 * 6 5 4 34 34 H 1.08999 * 109.47155 * 290.00104 * 7 5 4 35 35 H 1.08997 * 109.47045 * 50.00586 * 7 5 4 36 36 H 1.07992 * 119.97085 * 359.97438 * 9 8 7 37 37 H 1.08007 * 120.03094 * 180.27478 * 10 9 8 38 38 H 0.97003 * 119.99759 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.03772 * 179.97438 * 21 11 10 40 40 H 1.08005 * 119.96694 * 180.02562 * 22 21 11 41 41 H 1.08999 * 113.61532 * 254.52722 * 23 2 1 42 42 H 1.09004 * 113.61812 * 25.43256 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4091 0.0000 4 6 3.1923 0.8663 -0.9876 5 7 3.5319 1.8086 -2.0620 6 6 4.4374 2.8580 -1.5753 7 6 4.1115 1.1062 -3.2147 8 6 4.2188 2.0561 -4.3798 9 6 3.1715 2.1700 -5.2759 10 6 3.2645 3.0438 -6.3413 11 6 4.4159 3.7996 -6.5192 12 8 4.5129 4.6545 -7.5691 13 6 5.6989 5.2698 -7.7499 14 1 6.4920 5.1366 -7.0289 15 6 5.9006 6.0737 -8.8616 16 7 7.0576 6.6745 -9.0377 17 14 4.5288 6.3048 -10.1082 18 1 3.7001 7.4748 -9.7212 19 1 5.1156 6.5368 -11.4525 20 1 3.6803 5.0866 -10.1421 21 6 5.4681 3.6787 -5.6208 22 6 5.3663 2.8081 -4.5537 23 6 2.1460 -0.1837 -1.3970 24 1 -0.3634 -0.9493 -0.3933 25 1 -0.3634 0.8154 -0.6255 26 1 -0.3633 0.1340 1.0189 27 1 1.9533 -0.6631 0.7545 28 1 1.4944 2.1705 -0.4288 29 1 2.5650 1.7024 0.9626 30 1 4.0717 0.4408 -0.5041 31 1 5.3912 2.4124 -1.2929 32 1 4.5990 3.5930 -2.3638 33 1 3.9938 3.3470 -0.7080 34 1 5.1035 0.7373 -2.9541 35 1 3.4719 0.2670 -3.4879 36 1 2.2784 1.5782 -5.1401 37 1 2.4446 3.1356 -7.0383 38 1 7.1988 7.2366 -9.8156 39 1 6.3650 4.2648 -5.7566 40 1 6.1841 2.7138 -3.8544 41 1 2.5650 -1.1763 -1.5624 42 1 1.4945 0.1422 -2.2079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137115551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:35 Heat of formation + Delta-G solvation = 17.324102 kcal Electronic energy + Delta-G solvation = -20771.894956 eV Core-core repulsion = 17718.172417 eV Total energy + Delta-G solvation = -3053.722539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.80906 -39.05967 -37.08829 -35.13338 -32.38359 -30.38705 -30.21774 -29.18959 -26.98853 -25.52849 -25.16465 -23.71044 -22.02197 -21.14290 -20.15175 -19.46474 -17.85685 -17.22289 -16.01375 -15.65155 -15.13931 -15.02125 -14.56836 -13.99368 -13.92254 -13.72482 -13.46917 -13.35873 -12.97132 -12.71280 -12.53964 -12.50256 -12.30527 -12.12729 -11.69049 -11.48291 -11.41178 -11.11287 -10.96110 -10.80057 -10.70956 -10.60898 -10.28785 -10.22409 -10.11250 -9.36821 -8.85830 -8.28811 -8.18441 -7.28069 -6.40700 -4.07257 2.15832 2.21468 3.23493 3.26250 3.41181 4.02312 4.24705 4.36385 4.52909 4.58287 4.67170 4.79487 4.88172 5.12473 5.15127 5.23172 5.33661 5.37507 5.51898 5.54434 5.58692 5.62810 5.63741 5.75074 5.76029 5.78654 5.85405 5.88187 5.93301 6.11941 6.15532 6.20302 6.35001 6.36977 6.60368 6.81728 7.03738 7.11367 7.25944 7.29052 7.36616 7.63927 7.81533 8.05401 8.94796 9.57888 10.67063 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038155 B = 0.003286 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.676894 B = 8517.825304 C = 8881.128280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.121 4.121 4 C 0.051 3.949 5 N -0.524 5.524 6 C 0.024 3.976 7 C 0.111 3.889 8 C -0.168 4.168 9 C -0.055 4.055 10 C -0.194 4.194 11 C 0.161 3.839 12 O -0.219 6.219 13 C -0.389 4.389 14 H 0.106 0.894 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.221 4.221 22 C -0.067 4.067 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.132 0.868 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -12.337 15.991 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C -0.159 4.159 4 C -0.057 4.057 5 N -0.248 5.248 6 C -0.124 4.124 7 C -0.016 4.016 8 C -0.170 4.170 9 C -0.074 4.074 10 C -0.213 4.213 11 C 0.109 3.891 12 O -0.124 6.124 13 C -0.464 4.464 14 H 0.123 0.877 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.241 4.241 22 C -0.086 4.086 23 C -0.163 4.163 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.081 0.919 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.348 -11.890 15.516 21.668 hybrid contribution 0.590 -0.074 -0.244 0.643 sum -8.758 -11.964 15.271 21.285 Atomic orbital electron populations 1.21691 0.94687 1.01822 1.01493 1.22358 0.95747 0.97754 0.97703 1.23065 0.97850 0.96722 0.98239 1.23111 0.95830 0.93811 0.92982 1.62297 1.43959 1.12574 1.05960 1.22383 0.93675 0.95520 1.00838 1.20793 0.97174 0.94785 0.88828 1.19152 0.95912 1.03478 0.98415 1.20441 0.96995 0.96844 0.93145 1.20209 0.98050 1.01313 1.01729 1.19130 0.93505 0.88791 0.87694 1.83570 1.35970 1.50545 1.42281 1.20767 0.89034 1.26530 1.10113 0.87682 1.24467 0.97133 0.95312 0.97113 1.69649 1.22484 1.30141 1.29634 0.86175 0.81478 0.79715 0.79514 1.19886 1.20849 1.18336 1.21236 1.01003 1.04312 0.97510 1.20647 0.96394 0.95141 0.96415 1.23078 0.97892 0.97997 0.97374 0.92721 0.92326 0.92921 0.89712 0.89077 0.92146 0.92330 0.96208 0.90374 0.92013 0.95117 0.90740 0.86985 0.86625 0.91080 0.85082 0.87732 0.91948 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.71 37.16 0.36 -0.68 16 2 C -0.12 -0.95 4.36 -89.81 -0.39 -1.34 16 3 C -0.12 -1.12 7.00 -25.92 -0.18 -1.31 16 4 C 0.05 0.53 3.19 -66.91 -0.21 0.32 16 5 N -0.52 -6.67 4.70 -235.35 -1.11 -7.78 16 6 C 0.02 0.30 9.06 60.07 0.54 0.85 16 7 C 0.11 1.50 5.02 -4.97 -0.02 1.47 16 8 C -0.17 -2.79 4.89 -104.57 -0.51 -3.30 16 9 C -0.06 -0.95 9.69 -39.61 -0.38 -1.34 16 10 C -0.19 -3.88 9.99 -39.40 -0.39 -4.27 16 11 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 12 O -0.22 -5.81 8.59 0.07 0.00 -5.81 16 13 C -0.39 -11.02 9.95 30.89 0.31 -10.71 16 14 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 15 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 16 N -0.88 -25.59 13.96 55.48 0.77 -24.81 16 17 Si 0.91 21.81 28.62 -169.99 -4.86 16.94 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 21 C -0.22 -4.78 9.17 -39.39 -0.36 -5.15 16 22 C -0.07 -1.21 7.98 -39.61 -0.32 -1.53 16 23 C -0.13 -1.17 6.14 -25.92 -0.16 -1.33 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 32 H 0.08 1.14 6.25 -51.93 -0.32 0.81 16 33 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 34 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 35 H 0.07 0.93 6.99 -51.93 -0.36 0.57 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 40 H 0.10 1.67 8.03 -52.48 -0.42 1.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -28.87 339.07 -8.86 -37.74 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.70 Total: 1.78 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.08 Total: -23.17 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: -0.33 Total: -32.59 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: 0.00 Total: -5.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.87 -8.86 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137115551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.059 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds