Wall clock time and date at job start Mon Mar 30 2020 01:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99973 * 2 1 4 4 H 1.08005 * 120.00268 * 200.39004 * 3 2 1 5 5 C 1.38815 * 120.00106 * 20.38132 * 3 2 1 6 6 N 1.31623 * 119.99878 * 14.97309 * 5 3 2 7 7 Si 1.86804 * 119.99984 * 194.97715 * 5 3 2 8 8 H 1.48494 * 109.47193 * 85.00235 * 7 5 3 9 9 H 1.48501 * 109.47150 * 205.00159 * 7 5 3 10 10 H 1.48501 * 109.47282 * 325.00194 * 7 5 3 11 11 C 1.46501 * 120.00394 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47249 * 270.00779 * 11 2 1 13 13 C 1.38280 * 120.01187 * 89.99711 * 12 11 2 14 14 C 1.37968 * 119.96110 * 180.09883 * 13 12 11 15 15 C 1.39154 * 120.21231 * 359.97438 * 14 13 12 16 16 C 1.38308 * 119.70732 * 359.90613 * 15 14 13 17 17 C 1.38108 * 120.00204 * 270.01640 * 12 11 2 18 18 C 1.50773 * 121.44901 * 180.27320 * 16 15 14 19 19 C 1.53073 * 109.64510 * 342.23823 * 18 16 15 20 20 C 1.53419 * 108.29195 * 48.20721 * 19 18 16 21 21 C 1.53000 * 109.67907 * 54.97509 * 20 19 18 22 22 C 1.53000 * 109.68138 * 175.53316 * 20 19 18 23 23 O 1.35846 * 118.49537 * 179.82101 * 15 14 13 24 24 H 1.09003 * 109.46960 * 275.09627 * 1 2 3 25 25 H 1.08993 * 109.46877 * 35.10400 * 1 2 3 26 26 H 1.08994 * 109.46304 * 155.10145 * 1 2 3 27 27 H 0.96992 * 119.99663 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47249 * 150.00062 * 11 2 1 29 29 H 1.09003 * 109.46729 * 30.00001 * 11 2 1 30 30 H 1.08006 * 120.02138 * 0.07608 * 13 12 11 31 31 H 1.07997 * 119.89437 * 180.02562 * 14 13 12 32 32 H 1.07999 * 119.84230 * 359.96724 * 17 12 11 33 33 H 1.08996 * 109.43558 * 222.19387 * 18 16 15 34 34 H 1.08998 * 109.43203 * 102.27722 * 18 16 15 35 35 H 1.08998 * 109.70242 * 167.90998 * 19 18 16 36 36 H 1.09001 * 109.69900 * 288.47089 * 19 18 16 37 37 H 1.08993 * 109.47501 * 60.00044 * 21 20 19 38 38 H 1.09004 * 109.46898 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47388 * 299.99423 * 21 20 19 40 40 H 1.08999 * 109.47141 * 60.00618 * 22 20 19 41 41 H 1.09002 * 109.46335 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.47204 * 300.00094 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3259 5 6 1.5208 2.3504 0.4187 6 7 0.3877 2.2834 1.0850 7 14 2.2827 4.0127 0.0363 8 1 1.8683 4.4464 -1.3221 9 1 1.8227 5.0098 1.0361 10 1 3.7626 3.9033 0.0911 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 6 1.5270 -2.5013 2.0739 14 6 1.7569 -2.8968 3.3756 15 6 2.9146 -2.4956 4.0352 16 6 3.8360 -1.6993 3.3796 17 6 3.5993 -1.3040 2.0728 18 6 5.1061 -1.2469 4.0546 19 6 4.9685 -1.4075 5.5706 20 6 4.4226 -2.8121 5.8585 21 6 5.3225 -3.8596 5.1999 22 6 4.3770 -3.0475 7.3696 23 8 3.1038 -2.9021 5.3175 24 1 -0.3633 0.0913 1.0236 25 1 -0.3633 0.8407 -0.5909 26 1 -0.3632 -0.9321 -0.4327 27 1 -0.0515 3.0971 1.3778 28 1 3.1500 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5130 30 1 0.6274 -2.8147 1.5649 31 1 1.0365 -3.5205 3.8838 32 1 4.3178 -0.6808 1.5611 33 1 5.2903 -0.1995 3.8160 34 1 5.9405 -1.8520 3.7000 35 1 5.9436 -1.2884 6.0428 36 1 4.2786 -0.6580 5.9584 37 1 6.3324 -3.7751 5.6011 38 1 4.9314 -4.8559 5.4061 39 1 5.3445 -3.6942 4.1227 40 1 3.7275 -2.3053 7.8335 41 1 3.9884 -4.0459 7.5701 42 1 5.3823 -2.9589 7.7816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141183954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:49 Heat of formation + Delta-G solvation = -2.063075 kcal Electronic energy + Delta-G solvation = -21830.752740 eV Core-core repulsion = 18776.189510 eV Total energy + Delta-G solvation = -3054.563230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62210 -37.77996 -35.29595 -34.56797 -32.47581 -31.25460 -29.69516 -28.35620 -27.50630 -25.95389 -25.24537 -23.77511 -22.09251 -21.93529 -20.50014 -18.42037 -17.17214 -16.67952 -15.91891 -15.26406 -14.95391 -14.79283 -14.26707 -14.00060 -13.61403 -13.60169 -13.12815 -12.94189 -12.74596 -12.70949 -12.29208 -12.16400 -12.12745 -11.85743 -11.74692 -11.26983 -10.98155 -10.79491 -10.73342 -10.67862 -10.54923 -10.42444 -10.17310 -9.95448 -9.88290 -9.79853 -8.52239 -8.16009 -7.45265 -6.74784 -5.70000 -3.11974 1.94523 2.08145 3.39578 3.45366 3.46696 3.48993 4.29647 4.55160 4.63951 4.71522 4.82018 5.09332 5.19821 5.35097 5.42157 5.45478 5.52674 5.53245 5.63854 5.66522 5.76387 5.79947 5.85158 5.90570 5.93466 6.05713 6.09144 6.14891 6.26034 6.26651 6.43109 6.65576 6.71382 6.78313 6.89254 7.05750 7.40212 7.42926 7.44644 7.75998 7.83588 7.96224 8.40807 9.25297 9.89026 10.37615 11.34880 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.005110 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.299272 B = 5478.598093 C = 6064.438468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.591 5.591 3 C -0.251 4.251 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.904 5.904 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.184 3.816 12 C -0.106 4.106 13 C -0.082 4.082 14 C -0.153 4.153 15 C 0.113 3.887 16 C -0.162 4.162 17 C -0.067 4.067 18 C -0.075 4.075 19 C -0.146 4.146 20 C 0.113 3.887 21 C -0.173 4.173 22 C -0.137 4.137 23 O -0.315 6.315 24 H 0.029 0.971 25 H 0.044 0.956 26 H -0.002 1.002 27 H 0.252 0.748 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -11.564 8.119 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.313 5.313 3 C -0.380 4.380 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.057 3.943 12 C -0.110 4.110 13 C -0.101 4.101 14 C -0.172 4.172 15 C 0.068 3.932 16 C -0.162 4.162 17 C -0.087 4.087 18 C -0.111 4.111 19 C -0.183 4.183 20 C 0.075 3.925 21 C -0.231 4.231 22 C -0.194 4.194 23 O -0.230 6.230 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.354 -11.468 8.278 16.427 hybrid contribution 0.411 1.246 0.017 1.312 sum 8.765 -10.222 8.295 15.816 Atomic orbital electron populations 1.20812 0.82366 0.95479 0.99502 1.44146 1.01955 1.00365 1.84795 1.19204 0.97158 0.84750 1.36924 0.91294 1.24991 0.97910 0.98346 0.98420 1.70093 1.18748 1.26761 1.39218 0.86298 0.78634 0.84154 0.77617 1.21430 1.21802 1.20594 1.19902 0.96357 0.88461 0.89607 1.21005 0.93405 0.95648 1.00946 1.20716 0.98520 0.97404 0.93483 1.20422 0.97354 1.04471 0.94905 1.18433 0.95361 0.95871 0.83490 1.19653 0.97959 1.02521 0.96115 1.20713 0.97374 0.97699 0.92874 1.20446 0.95096 1.01912 0.93692 1.22239 1.02105 0.96900 0.97095 1.21743 0.81878 0.94869 0.94044 1.22400 0.99462 0.99093 1.02113 1.21760 1.02522 1.02927 0.92207 1.85971 1.29956 1.81576 1.25487 0.95250 0.93751 0.98331 0.93765 0.93043 0.93522 0.86404 0.86407 0.86458 0.90320 0.90969 0.90460 0.90625 0.91434 0.91894 0.91367 0.91615 0.91673 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 9.02 59.85 0.54 4.63 16 2 N -0.59 -15.04 2.91 -182.50 -0.53 -15.58 16 3 C -0.25 -6.91 9.68 -15.06 -0.15 -7.05 16 4 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 5 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16 6 N -0.90 -26.84 10.67 55.49 0.59 -26.25 16 7 Si 0.90 22.08 29.58 -169.99 -5.03 17.05 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.18 3.85 5.83 -5.19 -0.03 3.82 16 12 C -0.11 -2.16 5.46 -104.65 -0.57 -2.73 16 13 C -0.08 -1.56 9.70 -39.66 -0.38 -1.94 16 14 C -0.15 -2.77 9.94 -39.34 -0.39 -3.16 16 15 C 0.11 2.04 6.02 -39.22 -0.24 1.80 16 16 C -0.16 -2.88 5.17 -104.44 -0.54 -3.42 16 17 C -0.07 -1.32 9.32 -39.51 -0.37 -1.69 16 18 C -0.07 -1.07 5.21 -27.81 -0.14 -1.21 16 19 C -0.15 -1.83 5.10 -26.48 -0.13 -1.97 16 20 C 0.11 1.41 1.13 -90.40 -0.10 1.31 16 21 C -0.17 -1.91 8.15 37.16 0.30 -1.61 16 22 C -0.14 -1.35 8.88 37.16 0.33 -1.02 16 23 O -0.31 -5.15 9.67 -19.26 -0.19 -5.34 16 24 H 0.03 0.81 7.40 -51.93 -0.38 0.42 16 25 H 0.04 1.19 7.21 -51.93 -0.37 0.81 16 26 H 0.00 -0.04 7.83 -51.93 -0.41 -0.45 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 28 H 0.05 1.03 7.97 -51.93 -0.41 0.62 16 29 H 0.05 0.88 7.80 -51.93 -0.41 0.48 16 30 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.90 7.00 -51.93 -0.36 0.54 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.85 5.88 -51.93 -0.31 0.54 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -31.16 334.40 -8.93 -40.09 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.85 Total: -0.74 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -1.96 Total: -14.27 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.06 Total: -41.83 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.19 Total: -5.34 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.16 -8.93 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141183954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds