Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99973 * 2 1 4 4 H 1.08005 * 120.00268 * 200.39004 * 3 2 1 5 5 C 1.38815 * 120.00106 * 20.38132 * 3 2 1 6 6 N 1.31623 * 119.99878 * 14.97309 * 5 3 2 7 7 Si 1.86804 * 119.99984 * 194.97715 * 5 3 2 8 8 H 1.48494 * 109.47193 * 85.00235 * 7 5 3 9 9 H 1.48501 * 109.47150 * 205.00159 * 7 5 3 10 10 H 1.48501 * 109.47282 * 325.00194 * 7 5 3 11 11 C 1.46501 * 120.00394 * 179.97438 * 2 1 3 12 12 C 1.50706 * 109.47249 * 270.00779 * 11 2 1 13 13 C 1.38280 * 120.01187 * 89.99711 * 12 11 2 14 14 C 1.37968 * 119.96110 * 180.09883 * 13 12 11 15 15 C 1.39154 * 120.21231 * 359.97438 * 14 13 12 16 16 C 1.38308 * 119.70732 * 359.90613 * 15 14 13 17 17 C 1.38108 * 120.00204 * 270.01640 * 12 11 2 18 18 C 1.50773 * 121.44901 * 180.27320 * 16 15 14 19 19 C 1.53073 * 109.64510 * 342.23823 * 18 16 15 20 20 C 1.53419 * 108.29195 * 48.20721 * 19 18 16 21 21 C 1.53000 * 109.67907 * 54.97509 * 20 19 18 22 22 C 1.53000 * 109.68138 * 175.53316 * 20 19 18 23 23 O 1.35846 * 118.49537 * 179.82101 * 15 14 13 24 24 H 1.09003 * 109.46960 * 275.09627 * 1 2 3 25 25 H 1.08993 * 109.46877 * 35.10400 * 1 2 3 26 26 H 1.08994 * 109.46304 * 155.10145 * 1 2 3 27 27 H 0.96992 * 119.99663 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47249 * 150.00062 * 11 2 1 29 29 H 1.09003 * 109.46729 * 30.00001 * 11 2 1 30 30 H 1.08006 * 120.02138 * 0.07608 * 13 12 11 31 31 H 1.07997 * 119.89437 * 180.02562 * 14 13 12 32 32 H 1.07999 * 119.84230 * 359.96724 * 17 12 11 33 33 H 1.08996 * 109.43558 * 222.19387 * 18 16 15 34 34 H 1.08998 * 109.43203 * 102.27722 * 18 16 15 35 35 H 1.08998 * 109.70242 * 167.90998 * 19 18 16 36 36 H 1.09001 * 109.69900 * 288.47089 * 19 18 16 37 37 H 1.08993 * 109.47501 * 60.00044 * 21 20 19 38 38 H 1.09004 * 109.46898 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47388 * 299.99423 * 21 20 19 40 40 H 1.08999 * 109.47141 * 60.00618 * 22 20 19 41 41 H 1.09002 * 109.46335 * 179.97438 * 22 20 19 42 42 H 1.09000 * 109.47204 * 300.00094 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2152 -0.3259 5 6 1.5208 2.3504 0.4187 6 7 0.3877 2.2834 1.0850 7 14 2.2827 4.0127 0.0363 8 1 1.8683 4.4464 -1.3221 9 1 1.8227 5.0098 1.0361 10 1 3.7626 3.9033 0.0911 11 6 2.1976 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 6 1.5270 -2.5013 2.0739 14 6 1.7569 -2.8968 3.3756 15 6 2.9146 -2.4956 4.0352 16 6 3.8360 -1.6993 3.3796 17 6 3.5993 -1.3040 2.0728 18 6 5.1061 -1.2469 4.0546 19 6 4.9685 -1.4075 5.5706 20 6 4.4226 -2.8121 5.8585 21 6 5.3225 -3.8596 5.1999 22 6 4.3770 -3.0475 7.3696 23 8 3.1038 -2.9021 5.3175 24 1 -0.3633 0.0913 1.0236 25 1 -0.3633 0.8407 -0.5909 26 1 -0.3632 -0.9321 -0.4327 27 1 -0.0515 3.0971 1.3778 28 1 3.1500 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5130 30 1 0.6274 -2.8147 1.5649 31 1 1.0365 -3.5205 3.8838 32 1 4.3178 -0.6808 1.5611 33 1 5.2903 -0.1995 3.8160 34 1 5.9405 -1.8520 3.7000 35 1 5.9436 -1.2884 6.0428 36 1 4.2786 -0.6580 5.9584 37 1 6.3324 -3.7751 5.6011 38 1 4.9314 -4.8559 5.4061 39 1 5.3445 -3.6942 4.1227 40 1 3.7275 -2.3053 7.8335 41 1 3.9884 -4.0459 7.5701 42 1 5.3823 -2.9589 7.7816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141183954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -18.306182 kcal Electronic energy + Delta-G solvation = -21831.457094 eV Core-core repulsion = 18776.189510 eV Total energy + Delta-G solvation = -3055.267584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84773 -39.19544 -37.11719 -35.73345 -33.94666 -32.93329 -31.28926 -29.63094 -28.34798 -27.96064 -26.94910 -24.92769 -23.64594 -23.37461 -22.09378 -19.71292 -18.73521 -18.32788 -17.20255 -16.86219 -16.40260 -16.02112 -15.65345 -15.51273 -15.31660 -15.04346 -14.82094 -14.16146 -14.12713 -14.00908 -13.49172 -13.26601 -13.23363 -13.04561 -12.93442 -12.81105 -12.75424 -12.52887 -12.29123 -12.24312 -12.09402 -11.98091 -11.78886 -11.57740 -11.47283 -11.08786 -10.62714 -9.59188 -8.95579 -8.72925 -7.81581 -5.26274 0.50684 0.61160 1.45083 1.47118 1.54537 2.35192 2.51234 2.87622 3.33493 3.64247 3.72960 3.81362 3.89991 3.96001 4.04403 4.22638 4.26202 4.40216 4.49979 4.58352 4.63673 4.65643 4.74273 4.84363 4.84961 4.86181 4.86914 4.94021 5.00231 5.07017 5.20226 5.21703 5.26486 5.31686 5.35213 5.46462 5.60954 5.63886 5.73249 5.92511 6.01663 6.32592 6.66522 7.15551 7.87810 8.31400 9.22180 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022194 B = 0.005110 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.299272 B = 5478.598093 C = 6064.438468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.608 5.608 3 C -0.253 4.253 4 H 0.073 0.927 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.284 1.284 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.184 3.816 12 C -0.128 4.128 13 C -0.090 4.090 14 C -0.164 4.164 15 C 0.112 3.888 16 C -0.168 4.168 17 C -0.084 4.084 18 C -0.076 4.076 19 C -0.143 4.143 20 C 0.100 3.900 21 C -0.169 4.169 22 C -0.134 4.134 23 O -0.328 6.328 24 H -0.002 1.002 25 H 0.018 0.982 26 H 0.033 0.967 27 H 0.245 0.755 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -12.598 9.164 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.330 5.330 3 C -0.384 4.384 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.586 5.586 7 Si 0.793 3.207 8 H -0.211 1.211 9 H -0.226 1.226 10 H -0.193 1.193 11 C 0.058 3.942 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.182 4.182 15 C 0.067 3.933 16 C -0.168 4.168 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.180 4.180 20 C 0.063 3.937 21 C -0.226 4.226 22 C -0.191 4.191 23 O -0.243 6.243 24 H 0.017 0.983 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.402 -12.541 9.321 18.772 hybrid contribution -0.145 1.418 -0.241 1.445 sum 10.258 -11.124 9.081 17.647 Atomic orbital electron populations 1.20534 0.82666 0.96063 0.97397 1.44327 1.02121 1.01391 1.85129 1.19525 0.97273 0.85868 1.35707 0.90921 1.25727 0.98641 1.01607 0.98949 1.70272 1.20348 1.26942 1.41036 0.85313 0.78389 0.79938 0.77040 1.21052 1.22553 1.19294 1.20003 0.96486 0.87152 0.90516 1.20936 0.94479 0.97200 1.00460 1.20879 0.98634 0.97322 0.94011 1.20695 0.97999 1.04667 0.94880 1.18598 0.95135 0.95324 0.84223 1.20001 0.99340 1.01901 0.95600 1.20847 0.97444 0.98082 0.93890 1.20536 0.94031 1.01796 0.94900 1.22264 1.03596 0.96405 0.95748 1.22203 0.80462 0.95376 0.95666 1.22378 1.00740 0.98565 1.00942 1.21809 1.04324 1.02925 0.90003 1.85967 1.32721 1.81225 1.24409 0.98332 0.96365 0.94822 0.94531 0.92484 0.91362 0.85270 0.84781 0.86822 0.90888 0.88762 0.86876 0.92464 0.88454 0.91648 0.93084 0.92348 0.91253 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 9.02 127.77 1.15 10.23 16 2 N -0.61 -31.07 2.91 -731.29 -2.13 -33.20 16 3 C -0.25 -14.07 9.68 84.03 0.81 -13.25 16 4 H 0.07 3.89 7.86 -2.91 -0.02 3.86 16 5 C -0.05 -3.12 5.07 84.86 0.43 -2.69 16 6 N -0.94 -57.33 10.67 21.65 0.23 -57.10 16 7 Si 0.96 45.93 29.58 68.60 2.03 47.96 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 9 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.18 7.64 5.83 85.63 0.50 8.14 16 12 C -0.13 -5.18 5.46 -19.88 -0.11 -5.28 16 13 C -0.09 -3.38 9.70 22.22 0.22 -3.16 16 14 C -0.16 -5.87 9.94 22.43 0.22 -5.65 16 15 C 0.11 3.97 6.02 22.51 0.14 4.11 16 16 C -0.17 -5.87 5.17 -19.75 -0.10 -5.97 16 17 C -0.08 -3.28 9.32 22.32 0.21 -3.07 16 18 C -0.08 -2.04 5.21 29.90 0.16 -1.89 16 19 C -0.14 -3.23 5.10 30.76 0.16 -3.07 16 20 C 0.10 2.25 1.13 -10.65 -0.01 2.24 16 21 C -0.17 -3.21 8.15 71.98 0.59 -2.62 16 22 C -0.13 -2.21 8.88 71.98 0.64 -1.57 16 23 O -0.33 -10.30 9.67 -91.82 -0.89 -11.19 16 24 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 16 25 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 26 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 27 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.06 2.26 7.97 -2.39 -0.02 2.25 16 29 H 0.07 2.49 7.80 -2.39 -0.02 2.47 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 32 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.12 7.00 -2.39 -0.02 2.10 16 35 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.15 5.88 -2.39 -0.01 1.14 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.07 334.40 5.22 -62.85 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.98 Total: 14.19 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 4.99 Total: -23.51 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -1.90 Total: -90.30 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.89 Total: -11.19 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -68.07 5.22 -62.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141183954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.543 kcal (2) G-P(sol) polarization free energy of solvation -68.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds