Wall clock time and date at job start Mon Mar 30 2020 02:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38240 * 119.99883 * 2 1 4 4 C 1.38231 * 120.00211 * 179.97438 * 3 2 1 5 5 C 1.38243 * 119.99634 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99580 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47374 * 359.97438 * 6 5 4 8 8 C 1.53006 * 109.47239 * 120.00123 * 6 5 4 9 9 C 1.50699 * 109.46956 * 239.99780 * 6 5 4 10 10 O 1.21278 * 120.00240 * 0.02562 * 9 6 5 11 11 N 1.34780 * 120.00249 * 180.02562 * 9 6 5 12 12 C 1.46500 * 120.00188 * 180.02562 * 11 9 6 13 13 C 1.53008 * 109.46913 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.46733 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47029 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00001 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99833 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00199 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46881 * 90.00212 * 19 17 15 21 21 H 1.48500 * 109.47519 * 210.00051 * 19 17 15 22 22 H 1.48501 * 109.47362 * 330.00383 * 19 17 15 23 23 C 1.38229 * 120.00138 * 0.27337 * 5 4 3 24 24 C 1.38232 * 120.00094 * 359.52350 * 23 5 4 25 25 H 1.09002 * 109.46996 * 90.00378 * 1 2 3 26 26 H 1.09000 * 109.46656 * 209.99711 * 1 2 3 27 27 H 1.08994 * 109.46830 * 329.99928 * 1 2 3 28 28 H 1.07997 * 119.99862 * 359.97438 * 3 2 1 29 29 H 1.08002 * 120.00211 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47050 * 59.99664 * 8 6 5 31 31 H 1.09001 * 109.46801 * 179.97438 * 8 6 5 32 32 H 1.09001 * 109.46998 * 299.99373 * 8 6 5 33 33 H 0.96998 * 119.99818 * 359.97438 * 11 9 6 34 34 H 1.09000 * 109.47175 * 299.99877 * 12 11 9 35 35 H 1.09002 * 109.47092 * 59.99835 * 12 11 9 36 36 H 1.09004 * 109.46943 * 299.99518 * 13 12 11 37 37 H 1.08992 * 109.47022 * 59.99591 * 13 12 11 38 38 H 1.09000 * 109.47250 * 299.99921 * 14 13 12 39 39 H 1.09002 * 109.47722 * 59.99994 * 14 13 12 40 40 H 0.96995 * 119.99622 * 179.97438 * 18 17 15 41 41 H 1.07998 * 119.99907 * 179.72237 * 23 5 4 42 42 H 1.08002 * 120.00193 * 180.26903 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 1 6.1420 1.0278 0.0021 8 6 6.2878 -0.7205 1.2528 9 6 6.2820 -0.7108 -1.2270 10 8 5.4945 -1.1718 -2.0259 11 7 7.6073 -0.8345 -1.4390 12 6 8.0965 -1.5251 -2.6347 13 6 9.6266 -1.5251 -2.6335 14 6 10.1375 -2.2459 -3.8826 15 6 11.6445 -2.2454 -3.8817 16 1 12.1838 -1.7774 -3.0715 17 6 12.3347 -2.8415 -4.9159 18 7 13.6499 -2.8414 -4.9148 19 14 11.4018 -3.6503 -6.3176 20 1 11.1541 -2.6517 -7.3885 21 1 12.2053 -4.7732 -6.8641 22 1 10.1043 -4.1688 -5.8146 23 6 3.5806 -1.1970 -0.0036 24 6 2.1983 -1.1971 0.0001 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1205 2.1326 0.0010 30 1 5.9245 -1.7482 1.2529 31 1 7.3778 -0.7208 1.2533 32 1 5.9239 -0.2063 2.1422 33 1 8.2371 -0.4655 -0.8002 34 1 7.7328 -2.5527 -2.6352 35 1 7.7342 -1.0111 -3.5250 36 1 9.9899 -0.4974 -2.6333 37 1 9.9891 -2.0388 -1.7432 38 1 9.7741 -3.2735 -3.8833 39 1 9.7749 -1.7317 -4.7727 40 1 14.1353 -3.2611 -5.6421 41 1 4.1207 -2.1323 -0.0073 42 1 1.6583 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144455685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:46 Heat of formation + Delta-G solvation = -42.462231 kcal Electronic energy + Delta-G solvation = -20200.612944 eV Core-core repulsion = 17144.297875 eV Total energy + Delta-G solvation = -3056.315069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35931 -38.89684 -35.60299 -34.73213 -33.32793 -31.79731 -31.11615 -30.87433 -27.29130 -26.86154 -24.39222 -22.92652 -22.63620 -21.16086 -20.60133 -19.54287 -17.16280 -16.75485 -16.50724 -15.69151 -15.50269 -15.17995 -14.91627 -14.20069 -14.17692 -13.97135 -13.62262 -13.54185 -13.44181 -12.81324 -12.70146 -12.50644 -12.31337 -12.04211 -11.94361 -11.87869 -11.64823 -11.13179 -11.06759 -11.01611 -10.89302 -10.17781 -9.96095 -9.77730 -9.51031 -9.23843 -8.97860 -8.84582 -8.61119 -8.56466 -6.07351 -4.06072 1.19334 1.33990 2.73236 3.28437 3.30686 3.38245 3.42561 3.72814 4.37955 4.43577 4.57709 4.74081 4.80964 4.86708 4.95599 5.05243 5.19087 5.26730 5.32740 5.35630 5.44609 5.50143 5.56877 5.58393 5.64638 5.65874 5.86307 5.94937 5.98395 6.00866 6.29864 6.35404 6.43595 6.47464 6.51619 6.69588 6.78684 6.90411 7.21657 7.35087 7.63702 7.75822 8.34116 8.49322 8.96396 9.54943 11.05854 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036594 B = 0.002784 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.967283 B =10055.572927 C =10488.183958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.070 4.070 6 C -0.073 4.073 7 H 0.103 0.897 8 C -0.141 4.141 9 C 0.512 3.488 10 O -0.535 6.535 11 N -0.725 5.725 12 C 0.114 3.886 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.079 4.079 24 C -0.123 4.123 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.838 7.459 14.222 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.071 4.071 6 C -0.094 4.094 7 H 0.121 0.879 8 C -0.198 4.198 9 C 0.297 3.703 10 O -0.412 6.412 11 N -0.377 5.377 12 C -0.008 4.008 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.097 4.097 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.137 0.863 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.241 7.048 13.522 27.797 hybrid contribution 0.117 -0.234 -0.628 0.680 sum -23.124 6.814 12.894 27.339 Atomic orbital electron populations 1.20780 0.91418 1.02524 1.02272 1.19906 0.95928 0.93295 0.99856 1.20920 0.93992 0.97404 1.01986 1.20979 0.94267 0.97171 1.00271 1.19295 0.93330 0.93604 1.00828 1.20311 0.93072 1.01504 0.94524 0.87887 1.21801 1.01404 1.00883 0.95741 1.20448 0.82547 0.80078 0.87235 1.90716 1.55313 1.48374 1.46790 1.46163 1.06630 1.58684 1.26175 1.21646 0.96085 0.96704 0.86414 1.21701 0.90653 1.01532 1.01199 1.19504 0.97271 0.95484 0.92670 1.21094 0.89299 1.36943 1.08650 0.91009 1.25034 0.94761 0.95654 0.98072 1.69914 1.06281 1.45016 1.32961 0.86773 0.80388 0.79457 0.82658 1.20247 1.21359 1.18909 1.20896 0.93914 0.97648 0.97214 1.20985 0.94116 0.97456 1.01538 0.91253 0.91667 0.91711 0.86252 0.86169 0.91817 0.91471 0.91269 0.76685 0.91846 0.91875 0.92137 0.92096 0.96329 0.96769 0.92696 0.86290 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.13 9.67 -39.58 -0.38 -1.51 16 5 C -0.07 -0.81 4.40 -104.62 -0.46 -1.27 16 6 C -0.07 -0.75 2.90 -92.92 -0.27 -1.02 16 7 H 0.10 0.86 7.88 -51.93 -0.41 0.45 16 8 C -0.14 -1.16 8.91 37.16 0.33 -0.83 16 9 C 0.51 7.19 7.02 -10.98 -0.08 7.11 16 10 O -0.54 -9.71 15.09 5.56 0.08 -9.63 16 11 N -0.73 -9.73 5.45 -60.29 -0.33 -10.06 16 12 C 0.11 1.89 5.67 -4.04 -0.02 1.87 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 15 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 19 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 23 C -0.08 -0.95 7.92 -39.59 -0.31 -1.26 16 24 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.12 0.99 7.95 -52.49 -0.42 0.58 16 30 H 0.06 0.57 7.40 -51.93 -0.38 0.18 16 31 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.40 4.24 7.89 -40.82 -0.32 3.92 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.12 1.45 7.52 -52.49 -0.39 1.06 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -33.38 347.35 -8.70 -42.08 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.89 Total: 0.19 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.90 Total: -18.00 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.45 Total: -37.01 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.38 -8.70 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144455685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.378 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds