Wall clock time and date at job start Mon Mar 30 2020 02:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 119.99286 * 2 1 4 4 C 1.38237 * 119.99613 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00292 * 0.02562 * 4 3 2 6 6 C 1.50690 * 120.00209 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47343 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47465 * 240.00013 * 6 5 4 9 9 C 1.50706 * 109.47185 * 120.00204 * 6 5 4 10 10 O 1.21281 * 119.99699 * 359.97438 * 9 6 5 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 6 5 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 6 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 C 1.50709 * 109.47079 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99331 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00242 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00070 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00390 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47408 * 89.99806 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00334 * 19 17 15 22 22 H 1.48505 * 109.46796 * 330.00178 * 19 17 15 23 23 C 1.38232 * 119.99534 * 0.25358 * 5 4 3 24 24 C 1.38229 * 120.00226 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47224 * 90.00118 * 1 2 3 26 26 H 1.09001 * 109.46831 * 209.99511 * 1 2 3 27 27 H 1.09004 * 109.47797 * 329.99652 * 1 2 3 28 28 H 1.07998 * 120.00825 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00293 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46848 * 60.00055 * 8 6 5 31 31 H 1.09000 * 109.47019 * 179.97438 * 8 6 5 32 32 H 1.08995 * 109.46910 * 300.00541 * 8 6 5 33 33 H 0.97005 * 120.00161 * 359.72088 * 11 9 6 34 34 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 35 35 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 36 36 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 37 37 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 38 38 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 39 39 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 40 40 H 0.96994 * 120.00439 * 179.97438 * 18 17 15 41 41 H 1.08006 * 119.99994 * 179.72646 * 23 5 4 42 42 H 1.07995 * 120.00322 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0016 6 6 5.7786 0.0003 -0.0028 7 1 6.1419 1.0280 -0.0021 8 6 6.2878 -0.7203 -1.2527 9 6 6.2820 -0.7107 1.2270 10 8 5.4945 -1.1716 2.0259 11 7 7.6072 -0.8334 1.4395 12 6 8.0965 -1.5250 2.6347 13 6 9.6265 -1.5304 2.6304 14 6 10.1374 -2.2521 3.8789 15 6 11.6445 -2.2569 3.8750 16 1 12.1837 -1.7912 3.0634 17 6 12.3346 -2.8547 4.9080 18 7 11.6779 -3.4213 5.8966 19 14 14.2026 -2.8612 4.9029 20 1 14.7038 -1.6494 5.5997 21 1 14.6954 -4.0744 5.6034 22 1 14.6937 -2.8650 3.5014 23 6 3.5806 -1.1969 -0.0074 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3635 0.8899 0.5139 28 1 1.6580 2.1325 0.0004 29 1 4.1204 2.1326 -0.0010 30 1 5.9237 -0.2061 -2.1422 31 1 7.3778 -0.7198 -1.2537 32 1 5.9245 -1.7480 -1.2530 33 1 8.2370 -0.4676 0.7988 34 1 7.7374 -1.0094 3.5253 35 1 7.7295 -2.5514 2.6363 36 1 9.9855 -2.0460 1.7397 37 1 9.9933 -0.5040 2.6288 38 1 9.7784 -1.7362 4.7694 39 1 9.7705 -3.2785 3.8810 40 1 12.1634 -3.8422 6.6232 41 1 4.1206 -2.1323 -0.0127 42 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144455687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:50 Heat of formation + Delta-G solvation = -45.970600 kcal Electronic energy + Delta-G solvation = -20143.872087 eV Core-core repulsion = 17087.404883 eV Total energy + Delta-G solvation = -3056.467203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30153 -38.83910 -35.47852 -34.68453 -33.32078 -31.70799 -31.02989 -30.70443 -26.94232 -26.73906 -24.35732 -22.96223 -22.70815 -21.11629 -20.65043 -19.51862 -16.98558 -16.67743 -16.25277 -15.60005 -15.43002 -15.07440 -14.83276 -14.44569 -14.08463 -13.95848 -13.57979 -13.51580 -13.39911 -12.73100 -12.46735 -12.30356 -12.27342 -11.88153 -11.84251 -11.80179 -11.54751 -11.06628 -10.97672 -10.90338 -10.73173 -10.59996 -9.87279 -9.79567 -9.35406 -9.12291 -8.93775 -8.75264 -8.57213 -8.38010 -6.02499 -4.05750 1.23218 1.37610 2.80460 3.30141 3.34560 3.36849 3.39807 3.77573 4.41931 4.43551 4.61956 4.77708 4.85382 4.90411 4.99646 5.09937 5.22828 5.33187 5.36370 5.37304 5.48774 5.53693 5.61799 5.66098 5.75004 5.77784 5.89359 5.98736 6.02090 6.16137 6.33588 6.49652 6.51253 6.55487 6.59543 6.83509 6.94171 7.00026 7.62730 7.72955 7.75319 7.96198 8.36491 8.42813 9.00965 9.58475 11.08798 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045122 B = 0.002578 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.388878 B =10857.584744 C =11145.327706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.069 4.069 6 C -0.073 4.073 7 H 0.102 0.898 8 C -0.141 4.141 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.079 4.079 24 C -0.122 4.122 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.053 8.715 -16.367 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.070 4.070 6 C -0.094 4.094 7 H 0.120 0.880 8 C -0.198 4.198 9 C 0.296 3.704 10 O -0.411 6.411 11 N -0.377 5.377 12 C -0.006 4.006 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.097 4.097 24 C -0.140 4.140 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.590 8.266 -15.596 25.635 hybrid contribution 1.459 0.143 -0.075 1.468 sum -17.130 8.410 -15.672 24.693 Atomic orbital electron populations 1.20777 0.91432 1.02702 1.02062 1.19896 0.95918 0.93296 0.99931 1.20917 0.93986 0.97391 1.01987 1.20975 0.94262 0.97163 1.00343 1.19294 0.93346 0.93596 1.00718 1.20315 0.93063 1.01475 0.94589 0.87954 1.21797 1.01360 1.00906 0.95742 1.20434 0.82620 0.80154 0.87215 1.90721 1.55296 1.48331 1.46765 1.46207 1.06547 1.58747 1.26162 1.21637 0.96140 0.96640 0.86183 1.21883 0.90793 1.01208 1.01950 1.19031 0.95765 0.95470 0.91150 1.21202 0.91614 1.36316 1.06924 0.92646 1.25036 0.98523 0.95382 0.95577 1.69965 1.35476 1.37284 1.10555 0.86576 0.85696 0.77509 0.78097 1.20656 1.21201 1.19896 1.20906 0.93920 0.97649 0.97250 1.20984 0.94113 0.97455 1.01467 0.91372 0.91617 0.91688 0.86273 0.86200 0.91331 0.91524 0.91800 0.76867 0.91851 0.91841 0.92739 0.92753 0.96300 0.96287 0.92915 0.86281 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.93 5.88 -104.63 -0.62 -1.54 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.17 9.67 -39.58 -0.38 -1.55 16 5 C -0.07 -0.82 4.39 -104.63 -0.46 -1.28 16 6 C -0.07 -0.78 2.90 -92.92 -0.27 -1.05 16 7 H 0.10 0.90 7.88 -51.93 -0.41 0.49 16 8 C -0.14 -1.20 8.90 37.16 0.33 -0.87 16 9 C 0.51 7.51 7.03 -10.98 -0.08 7.44 16 10 O -0.53 -10.12 15.13 5.56 0.08 -10.03 16 11 N -0.73 -10.27 5.45 -60.29 -0.33 -10.60 16 12 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.08 -0.99 7.94 -39.58 -0.31 -1.30 16 24 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.12 1.03 7.95 -52.48 -0.42 0.61 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 32 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 33 H 0.40 4.45 7.89 -40.82 -0.32 4.13 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.12 1.50 7.52 -52.48 -0.39 1.10 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -33.05 350.97 -9.08 -42.12 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.93 Total: 0.34 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.91 Total: -17.43 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.41 Total: -36.76 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.05 -9.08 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144455687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.849 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds